CmoCh04G008020.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G008020.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 4012197 .. 4013663 (+)
Sequence length	291
RNA-Seq Expression	CmoCh04G008020.1
Synteny	CmoCh04G008020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAATAATGTACTGACTCACACAGACACACGTGCCATTAAAGTGCGGCTTTTGGAGAAGTCTGAGCCTTAATTAATAACAACTTTCTCATTTTACAAATATGATAAATAATTTAGACATAGTTTTATTATTATTATTATTATTTTACTTAAAACATTTATTTATAAATATGTAAAAAGAAACTAGTTTTTGGTTGTTGTATAGATTTTTGAAGAAGCATGTTGAAGCCTTAAAAATCAATTAAGCAATTAATCAAAGCACACTCCAACCACCCAACTAAGGTTTCAAGTAACAAATAAAAATACAAAAAAAGAAAAAAATCCTACCATTTTAAAATTTTGAAATAGTAAAAATACTTTAATTTTTTTTTTTAAAAAAAAAGCAATAGAAAATAAAATTTTATGGATAATGAAAAATACGTAATAAAAAGTTATAATTGAAATTTATTATTTAAAAAAAAAAAAAAAAAAAAAAAGAGGAAGAATTGATCGAGAAATTGGCTGGATCCATTTAAGGTCGAGAAGGCTGGGCCATGTTTTCTGATTGAAGCTCTTAGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTGTTCACTTCCCGATGGCGATGGTTGAGGTTTCTGTTATGACGTCGAGCACGGGATCTGAGATTTTGATGTAGCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTTTCTCCTTCGAAATTTTTAGCAGCATTTTCGTATCGTTAGGTTTTTTATGGAGTCAATGATAGCCGGCGTGTGAGATTTCCGAATCTGTATTCTTTGGGGATTGAAAGATTCCCGGATCCCTACTTAGGTTTTGTGACCTAGCCTGGAATTCTTAGTCGACGTCTACGAGACGTCCTGTTTTTGTCTGGAAATGGAGGAAAAAGTTCATTTGAAGGAGATAAGGATTTGTAAATTTTTCTTTTTGCGGTTGCCAAGAGGGGATTGTGATCTGCCCTTGTCCATATCACATGCTTGACCAAATTAATGTTGAAATAGCCGTATCAATTTGTATCTATGGACCCTTTTAATTGGAGTAAGCGTCGATGTTGCAAGTTAAGTTCGTTGAATAAGCAGTATGAATGGCTGCACTAGTTAAATAAATAGTTGGAACGTTAGGCTATGAAAACACACATTTTGGGCTTTTTCCACTTTTTGAGACTGCCATCTATCCTTTTATTGTTTGCTTCGTCATTCAACTTTCTCCACTATGTGTTTGAATCAGGTTGGTCGGTAG

mRNA sequence

ATGGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTCGGTAG

Coding sequence (CDS)

ATGGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTCGGTAG

Protein sequence

MASGGGGQALVCFAVRVSPTSSASSLLQFRICDACLTIFHAWTCFSESIYVLLLIWRFLLSQRVSASFFRGHCGRAALSLSYFVFSICLISEQVGR

Homology

[Close]

BLAST of CmoCh04G008020.1 vs. NCBI nr
Match: KAG6577215.1 (Tubby-like F-box protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 45 FSESIYVLLLIWRFLLSQRVSASFFRGHCGRAALSLSYFVFSICLISEQ 94
          F +SI+ LLLI +FLLSQR   SF RGHCGR  LSLS FV SICLI EQ
Sbjct: 23 FLDSIHALLLIRKFLLSQRAPGSFLRGHCGRGVLSLSCFVLSICLIFEQ 71

The following BLAST results are available for this feature:

BLAST of CmoCh04G008020.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G008020.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G008020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577215.1	1.7e-07	69.39	Tubby-like F-box protein 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh04G008020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G008020	CmoCh04G008020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G008020.1:exon:4540	CmoCh04G008020.1:exon:4540	exon
CmoCh04G008020.1:exon:4541	CmoCh04G008020.1:exon:4541	exon
CmoCh04G008020.1:exon:4542	CmoCh04G008020.1:exon:4542	exon
CmoCh04G008020.1:exon:4543	CmoCh04G008020.1:exon:4543	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G008020.1:cds	CmoCh04G008020.1:cds	CDS
CmoCh04G008020.1:cds	CmoCh04G008020.1:cds_2	CDS
CmoCh04G008020.1:cds	CmoCh04G008020.1:cds_3	CDS
CmoCh04G008020.1:cds	CmoCh04G008020.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G008020.1	CmoCh04G008020.1-protein	polypeptide