CmoCh04G008020.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G008020.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 4012197 .. 4013663 (+)
Sequence length291
RNA-Seq ExpressionCmoCh04G008020.1
SyntenyCmoCh04G008020.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAATAATGTACTGACTCACACAGACACACGTGCCATTAAAGTGCGGCTTTTGGAGAAGTCTGAGCCTTAATTAATAACAACTTTCTCATTTTACAAATATGATAAATAATTTAGACATAGTTTTATTATTATTATTATTATTTTACTTAAAACATTTATTTATAAATATGTAAAAAGAAACTAGTTTTTGGTTGTTGTATAGATTTTTGAAGAAGCATGTTGAAGCCTTAAAAATCAATTAAGCAATTAATCAAAGCACACTCCAACCACCCAACTAAGGTTTCAAGTAACAAATAAAAATACAAAAAAAGAAAAAAATCCTACCATTTTAAAATTTTGAAATAGTAAAAATACTTTAATTTTTTTTTTTAAAAAAAAAGCAATAGAAAATAAAATTTTATGGATAATGAAAAATACGTAATAAAAAGTTATAATTGAAATTTATTATTTAAAAAAAAAAAAAAAAAAAAAAAGAGGAAGAATTGATCGAGAAATTGGCTGGATCCATTTAAGGTCGAGAAGGCTGGGCCATGTTTTCTGATTGAAGCTCTTAGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTGTTCACTTCCCGATGGCGATGGTTGAGGTTTCTGTTATGACGTCGAGCACGGGATCTGAGATTTTGATGTAGCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTTTCTCCTTCGAAATTTTTAGCAGCATTTTCGTATCGTTAGGTTTTTTATGGAGTCAATGATAGCCGGCGTGTGAGATTTCCGAATCTGTATTCTTTGGGGATTGAAAGATTCCCGGATCCCTACTTAGGTTTTGTGACCTAGCCTGGAATTCTTAGTCGACGTCTACGAGACGTCCTGTTTTTGTCTGGAAATGGAGGAAAAAGTTCATTTGAAGGAGATAAGGATTTGTAAATTTTTCTTTTTGCGGTTGCCAAGAGGGGATTGTGATCTGCCCTTGTCCATATCACATGCTTGACCAAATTAATGTTGAAATAGCCGTATCAATTTGTATCTATGGACCCTTTTAATTGGAGTAAGCGTCGATGTTGCAAGTTAAGTTCGTTGAATAAGCAGTATGAATGGCTGCACTAGTTAAATAAATAGTTGGAACGTTAGGCTATGAAAACACACATTTTGGGCTTTTTCCACTTTTTGAGACTGCCATCTATCCTTTTATTGTTTGCTTCGTCATTCAACTTTCTCCACTATGTGTTTGAATCAGGTTGGTCGGTAG

mRNA sequence

ATGGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTCGGTAG

Coding sequence (CDS)

ATGGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTCGGTAG

Protein sequence

MASGGGGQALVCFAVRVSPTSSASSLLQFRICDACLTIFHAWTCFSESIYVLLLIWRFLLSQRVSASFFRGHCGRAALSLSYFVFSICLISEQVGR
Homology
[Close]
BLAST of CmoCh04G008020.1 vs. NCBI nr
Match: KAG6577215.1 (Tubby-like F-box protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 45 FSESIYVLLLIWRFLLSQRVSASFFRGHCGRAALSLSYFVFSICLISEQ 94
          F +SI+ LLLI +FLLSQR   SF RGHCGR  LSLS FV SICLI EQ
Sbjct: 23 FLDSIHALLLIRKFLLSQRAPGSFLRGHCGRGVLSLSCFVLSICLIFEQ 71

The following BLAST results are available for this feature:
BLAST of CmoCh04G008020.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G008020.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G008020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577215.11.7e-0769.39Tubby-like F-box protein 5, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh04G008020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G008020CmoCh04G008020gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G008020.1:exon:4540CmoCh04G008020.1:exon:4540exon
CmoCh04G008020.1:exon:4541CmoCh04G008020.1:exon:4541exon
CmoCh04G008020.1:exon:4542CmoCh04G008020.1:exon:4542exon
CmoCh04G008020.1:exon:4543CmoCh04G008020.1:exon:4543exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G008020.1:cdsCmoCh04G008020.1:cdsCDS
CmoCh04G008020.1:cdsCmoCh04G008020.1:cds_2CDS
CmoCh04G008020.1:cdsCmoCh04G008020.1:cds_3CDS
CmoCh04G008020.1:cdsCmoCh04G008020.1:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G008020.1CmoCh04G008020.1-proteinpolypeptide