CmoCh02G001720.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G001720.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 823941 .. 824965 (-)
Sequence length297
RNA-Seq ExpressionCmoCh02G001720.1
SyntenyCmoCh02G001720.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTGGGATCATCGGCGGAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCTTGCATTAATGGGCAACAGTAAGCTTCTTTTATCAATCCTTAGAGCTTTTTGGTTATGGAAGTCAATTTTTCTTCTCTTTTACGTTCTTTGATTTTGCGTTTGCTTAGGATGATATGTTTTTCTGGAAAGTAAACCAATGGCTTCGTTTTGTTTTGTCATTAATAATATAGGATTTGAATGAGTTCCTCGACAAGATGTGTCAATCCCCCTTGACTTGTTTTCCTTGTCCTCCTCTGTACTTATTATTGTCCTGTATACTATCGATGATTTATGTCGCTGAAATAGTTAGTTTATGTTAGGAATCACGACCCTCTATAGTGGTATGATATTGTTCACTTTGACCATAAGCTTTCGTGGCTTTACTTTTTGTTTTCTTAAAAGGCCTCATATCAATGGAGACGTATTCCTTACTTATAAACCTAGGATCAACTCCTTTGTTAGTCGACGTGGGACACTCCTTCCAACAATCCTCAACAGTTCTCCCCTCGAACAAAGTACACCATAGCGCCTCCCCTAAGGCTTATGGAGCCCTCGATCAGCCTCCCCTTAAACGAGGTTCAACTCCTTTTCTTTGGAGCCCTTGAACAAAGTACACCATTTGTTCGACATTTGAGGATTCTATTTGACACAATTAAATTAAGGACATGACTCTGATACCATGTTAGAAATCACGACTCTCCATAAATGGTATGATATTGTCCTCTTTGAGCATAAGCTTTCATAGCTTTACTTTTGGTTTCCCCAAAAAGCCCCATATCAATAAAGATGTATTCCTTACTTATAAACTCATAAACTCAATAAACTCATGAAACTTGTAGGTGTAATGCATGTTCTTATGTGGGCTGCGTTCTTGATCTCCTTCTCTTCAATTAAAGTTTTCCTGGTTATCACCAAAAGCTCTTTGCCTGTTCAGCACTCTCCGGCTCTGTGAAAGGTTGCATTAGTCAGCTTTGA

mRNA sequence

ATGATTGGTGGGATCATCGGCGGAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCTTGCATTAATGGGCAACAGTAAGCTTCTTTTATCAATCCTTAGAGCTTTTTGGTTATGGAAGTCAATTTTTCTTCTCTTTTACGATTTGAATGAGTTCCTCGACAAGATGTGTCAATCCCCCTTGACTTGTTTTCCTTGTCCTCCTCTTTTTCCTGGTTATCACCAAAAGCTCTTTGCCTGTTCAGCACTCTCCGGCTCTGTGAAAGGTTGCATTAGTCAGCTTTGA

Coding sequence (CDS)

ATGATTGGTGGGATCATCGGCGGAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCTTGCATTAATGGGCAACAGTAAGCTTCTTTTATCAATCCTTAGAGCTTTTTGGTTATGGAAGTCAATTTTTCTTCTCTTTTACGATTTGAATGAGTTCCTCGACAAGATGTGTCAATCCCCCTTGACTTGTTTTCCTTGTCCTCCTCTTTTTCCTGGTTATCACCAAAAGCTCTTTGCCTGTTCAGCACTCTCCGGCTCTGTGAAAGGTTGCATTAGTCAGCTTTGA

Protein sequence

MIGGIIGGTSTTLLNSFWASNRMLALMGNSKLLLSILRAFWLWKSIFLLFYDLNEFLDKMCQSPLTCFPCPPLFPGYHQKLFACSALSGSVKGCISQL
Homology
[Close]
BLAST of CmoCh02G001720.1 vs. NCBI nr
Match: KAG7034969.1 (Glutamate receptor 3.7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 1  MIGGIIGGTSTTLLNSFWASNRMLALMGNSKLLLSILRAFWLWKSIFLLFY 52
          MIGGIIGGTSTTL NSFWASNRMLALMGN+   LS+     L +S+ +L +
Sbjct: 1  MIGGIIGGTSTTLSNSFWASNRMLALMGNT---LSLPGQGSLMESLLILTF 48

The following BLAST results are available for this feature:
BLAST of CmoCh02G001720.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G001720.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G001720.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034969.13.1e-0464.71Glutamate receptor 3.7, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh02G001720.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G001720CmoCh02G001720gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G001720.1:exon:5003CmoCh02G001720.1:exon:5003exon
CmoCh02G001720.1:exon:5002CmoCh02G001720.1:exon:5002exon
CmoCh02G001720.1:exon:5001CmoCh02G001720.1:exon:5001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G001720.1:cdsCmoCh02G001720.1:cds_3CDS
CmoCh02G001720.1:cdsCmoCh02G001720.1:cds_2CDS
CmoCh02G001720.1:cdsCmoCh02G001720.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G001720.1CmoCh02G001720.1-proteinpolypeptide