CmoCh02G001720 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G001720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 823941 .. 824965 (-)
RNA-Seq ExpressionCmoCh02G001720
SyntenyCmoCh02G001720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTGGGATCATCGGCGGAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCTTGCATTAATGGGCAACAGTAAGCTTCTTTTATCAATCCTTAGAGCTTTTTGGTTATGGAAGTCAATTTTTCTTCTCTTTTACGTTCTTTGATTTTGCGTTTGCTTAGGATGATATGTTTTTCTGGAAAGTAAACCAATGGCTTCGTTTTGTTTTGTCATTAATAATATAGGATTTGAATGAGTTCCTCGACAAGATGTGTCAATCCCCCTTGACTTGTTTTCCTTGTCCTCCTCTGTACTTATTATTGTCCTGTATACTATCGATGATTTATGTCGCTGAAATAGTTAGTTTATGTTAGGAATCACGACCCTCTATAGTGGTATGATATTGTTCACTTTGACCATAAGCTTTCGTGGCTTTACTTTTTGTTTTCTTAAAAGGCCTCATATCAATGGAGACGTATTCCTTACTTATAAACCTAGGATCAACTCCTTTGTTAGTCGACGTGGGACACTCCTTCCAACAATCCTCAACAGTTCTCCCCTCGAACAAAGTACACCATAGCGCCTCCCCTAAGGCTTATGGAGCCCTCGATCAGCCTCCCCTTAAACGAGGTTCAACTCCTTTTCTTTGGAGCCCTTGAACAAAGTACACCATTTGTTCGACATTTGAGGATTCTATTTGACACAATTAAATTAAGGACATGACTCTGATACCATGTTAGAAATCACGACTCTCCATAAATGGTATGATATTGTCCTCTTTGAGCATAAGCTTTCATAGCTTTACTTTTGGTTTCCCCAAAAAGCCCCATATCAATAAAGATGTATTCCTTACTTATAAACTCATAAACTCAATAAACTCATGAAACTTGTAGGTGTAATGCATGTTCTTATGTGGGCTGCGTTCTTGATCTCCTTCTCTTCAATTAAAGTTTTCCTGGTTATCACCAAAAGCTCTTTGCCTGTTCAGCACTCTCCGGCTCTGTGAAAGGTTGCATTAGTCAGCTTTGA

mRNA sequence

ATGATTGGTGGGATCATCGGCGGAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCTTGCATTAATGGGCAACAGTAAGCTTCTTTTATCAATCCTTAGAGCTTTTTGGTTATGGAAGTCAATTTTTCTTCTCTTTTACGATTTGAATGAGTTCCTCGACAAGATGTGTCAATCCCCCTTGACTTGTTTTCCTTGTCCTCCTCTTTTTCCTGGTTATCACCAAAAGCTCTTTGCCTGTTCAGCACTCTCCGGCTCTGTGAAAGGTTGCATTAGTCAGCTTTGA

Coding sequence (CDS)

ATGATTGGTGGGATCATCGGCGGAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCTTGCATTAATGGGCAACAGTAAGCTTCTTTTATCAATCCTTAGAGCTTTTTGGTTATGGAAGTCAATTTTTCTTCTCTTTTACGATTTGAATGAGTTCCTCGACAAGATGTGTCAATCCCCCTTGACTTGTTTTCCTTGTCCTCCTCTTTTTCCTGGTTATCACCAAAAGCTCTTTGCCTGTTCAGCACTCTCCGGCTCTGTGAAAGGTTGCATTAGTCAGCTTTGA

Protein sequence

MIGGIIGGTSTTLLNSFWASNRMLALMGNSKLLLSILRAFWLWKSIFLLFYDLNEFLDKMCQSPLTCFPCPPLFPGYHQKLFACSALSGSVKGCISQL
Homology
[Close]
BLAST of CmoCh02G001720 vs. NCBI nr
Match: KAG7034969.1 (Glutamate receptor 3.7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 1  MIGGIIGGTSTTLLNSFWASNRMLALMGNSKLLLSILRAFWLWKSIFLLFY 52
          MIGGIIGGTSTTL NSFWASNRMLALMGN+   LS+     L +S+ +L +
Sbjct: 1  MIGGIIGGTSTTLSNSFWASNRMLALMGNT---LSLPGQGSLMESLLILTF 48

The following BLAST results are available for this feature:
BLAST of CmoCh02G001720 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G001720 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G001720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034969.13.1e-0464.71Glutamate receptor 3.7, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh02G001720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G001720.1CmoCh02G001720.1mRNA