Cmc11g0303121.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303121.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 24493374 .. 24493730 (-)
Sequence length	357
RNA-Seq Expression	Cmc11g0303121.1
Synteny	Cmc11g0303121.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTCCGATGCAGATTGGGTTGAGGATCCCACTGATCGACGTTCTACAACCGGTTACTGCTTCTACTTAAGCGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTACCGCCGAACTTTTATGGCTTCATTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAAGGGTCCCACTCTCCTTCATTGTGA

mRNA sequence

ATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTCCGATGCAGATTGGGTTGAGGATCCCACTGATCGACGTTCTACAACCGGTTACTGCTTCTACTTAAGCGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTACCGCCGAACTTTTATGGCTTCATTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAAGGGTCCCACTCTCCTTCATTGTGA

Coding sequence (CDS)

ATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTCCGATGCAGATTGGGTTGAGGATCCCACTGATCGACGTTCTACAACCGGTTACTGCTTCTACTTAAGCGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTACCGCCGAACTTTTATGGCTTCATTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAAGGGTCCCACTCTCCTTCATTGTGA

Protein sequence

MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCFYLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQGSHSPSL

Homology

[Close]

BLAST of Cmc11g0303121.1 vs. NCBI nr
Match: TYK30390.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-54
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
           MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 208 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 267

Query: 61  YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
           YL DSLISWRSKKQSVVSRSSTESEYRALAD TAELLWLHWLLADMGVPQQG
Sbjct: 268 YLGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVPQQG 319

[Close]

BLAST of Cmc11g0303121.1 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1252

[Close]

BLAST of Cmc11g0303121.1 vs. NCBI nr
Match: KAA0041601.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0065379.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12000.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1252

[Close]

BLAST of Cmc11g0303121.1 vs. NCBI nr
Match: KAA0054647.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 981  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1040

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1041 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1092

[Close]

BLAST of Cmc11g0303121.1 vs. NCBI nr
Match: KAA0060225.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 995  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1054

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1055 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1106

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-22
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            M  P   H+ A+ R+LRY+ GT  HG+     ++L L  YSDADW  D  D  ST GY  
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQGSHSP 117
            YL    ISW SKKQ  V RSSTE+EYR++A+ ++EL W+  LL ++G+  Q SH P
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPP 1369

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-21
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 4   PRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCFYLS 63
           P   H+ A+ R+LRY++ T  +GL+F+   +  L GYSDADW  D   RRST+GY F L+
Sbjct: 38  PCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLN 97

Query: 64  DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL 100
              +SWRSKKQ  V+ SSTE EY AL++AT E +WL
Sbjct: 98  GGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            M  P   H  A+ RILRY+ GT  HG+     ++L L  YSDADW  D  D  ST GY  
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGV 109
            YL    ISW SKKQ  V RSSTE+EYR++A+ ++E+ W+  LL ++G+
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI 1380

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1   MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
           M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DW    + RRSTTG+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLW 99
           +L  ++ISW +K+Q  VSRSSTE+EYRALA   AEL W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-16
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 4    PRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCFYLS 63
            P   H+ AV  ILRY++GT G  L F   S  +L GY+DAD   D  +R+S+TGY F  S
Sbjct: 1143 PGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFS 1202

Query: 64   DSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQ 112
               ISW+SK Q  V+ S+TE+EY A  +   E++WL   L ++G+ Q+
Sbjct: 1203 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK 1249

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy TrEMBL
Match: A0A5D3E4B0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2254G00020 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
           MAAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 208 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 267

Query: 61  YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
           YL DSLISWRSKKQSVVSRSSTESEYRALAD TAELLWLHWLLADMGVPQQG
Sbjct: 268 YLGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVPQQG 319

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.4e-54
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1252

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy TrEMBL
Match: A0A5A7T8F2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00410 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.4e-54
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 1141 MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1200

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1201 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1252

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy TrEMBL
Match: A0A5A7UJ79 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004570 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.4e-54
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 981  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1040

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1041 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1092

[Close]

BLAST of Cmc11g0303121.1 vs. ExPASy TrEMBL
Match: A0A5A7V2X4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00530 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.4e-54
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1    MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
            MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADW  DPTDRRSTTGYCF
Sbjct: 995  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1054

Query: 61   YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVPQQG 113
            YL DSLISWRSKKQSVVSRSSTESEYRALADATAELLWL WLLADMGVPQQG
Sbjct: 1055 YLGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQG 1106

[Close]

BLAST of Cmc11g0303121.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-26
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 3   APRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCFYL 62
           APR  H  AV++IL Y+KGT+G GL +SSQ+ + L  +SDA +      RRST GYC +L
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

Query: 63  SDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLHWLLADMGVP 110
             SLISW+SKKQ VVS+SS E+EYRAL+ AT E++WL     ++ +P
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

[Close]

BLAST of Cmc11g0303121.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1   MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYCF 60
           M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DW    + RRSTTG+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  YLSDSLISWRSKKQSVVSRSSTESEYRALADATAELLW 99
           +L  ++ISW +K+Q  VSRSSTE+EYRALA   AEL W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0303121.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 2  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWVEDPTDRRSTTGYC 60
          +A RT    AV ++L YVKGT+G GL +S+ S L L  ++D+DW   P  RRS TG+C
Sbjct: 22 SASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc11g0303121.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30390.1	8.7e-54	95.54	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0037745.1	1.9e-53	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041601.1	1.9e-53	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054647.1	1.9e-53	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060225.1	1.9e-53	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc11g0303121.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	9.1e-22	47.41	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	4.5e-21	51.04	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q94HW2	1.3e-20	47.22	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	1.7e-20	50.00	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	2.0e-16	43.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cmc11g0303121.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4B0	4.2e-54	95.54	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VIT8	9.4e-54	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T8F2	9.4e-54	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UJ79	9.4e-54	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V2X4	9.4e-54	96.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc11g0303121.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.7e-26	52.34	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.2e-21	50.00	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.3e-10	48.28	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF268	ATP-DEPENDENT DNA HELICASE	coord: 4..105
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..105
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 39..112 e-value: 1.2609E-42 score: 134.903

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0303121	Cmc11g0303121	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303121.1-exon	Cmc11g0303121.1-exon-CMiso1.1chr11:24493374..24493730	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303121.1-cds	Cmc11g0303121.1-cds-CMiso1.1chr11:24493374..24493730	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303121.1	Cmc11g0303121.1-protein	polypeptide