Cmc08g0229791.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc08g0229791.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 25219605 .. 25220288 (-)
Sequence length	684
RNA-Seq Expression	Cmc08g0229791.1
Synteny	Cmc08g0229791.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACGTTGATCAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGCTCTTTTGCACAAGAGTGGATAAACTTCTTAGGCCATGTGATAGAGTGTGGACGAATTGGAATGGAAGAAGGGAAGATTGTTGCGATACGCGACTGGACAATGCCGAAATCAGTCTCAGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTAACTGAACTACTGAAAAAAGATGTTCACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGGAGGGGCCACTTCTAGGGATTGCGGATGTGACCAAACCTTTCGAAGTCGAGACAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGGCACCCGATCGCATACGAAATTCGAAAATTGAATGCAGCCGAAAGAAGGTATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGA

mRNA sequence

ATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACGTTGATCAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGCTCTTTTGCACAAGAGTGGATAAACTTCTTAGGCCATGTGATAGAGTGTGGACGAATTGGAATGGAAGAAGGGAAGATTGTTGCGATACGCGACTGGACAATGCCGAAATCAGTCTCAGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTAACTGAACTACTGAAAAAAGATGTTCACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGGAGGGGCCACTTCTAGGGATTGCGGATGTGACCAAACCTTTCGAAGTCGAGACAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGGCACCCGATCGCATACGAAATTCGAAAATTGAATGCAGCCGAAAGAAGGTATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGA

Coding sequence (CDS)

ATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACGTTGATCAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGCTCTTTTGCACAAGAGTGGATAAACTTCTTAGGCCATGTGATAGAGTGTGGACGAATTGGAATGGAAGAAGGGAAGATTGTTGCGATACGCGACTGGACAATGCCGAAATCAGTCTCAGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTAACTGAACTACTGAAAAAAGATGTTCACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGGAGGGGCCACTTCTAGGGATTGCGGATGTGACCAAACCTTTCGAAGTCGAGACAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGGCACCCGATCGCATACGAAATTCGAAAATTGAATGCAGCCGAAAGAAGGTATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGA

Protein sequence

MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA

Homology

[Close]

BLAST of Cmc08g0229791.1 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 454.1 bits (1167), Expect = 6.9e-124
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 758 MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 817

Query: 61  LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
           LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 818 LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 877

Query: 121 RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
           RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 878 RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDGLKQALMEGPLLGIADVTKPFEVETD 937

Query: 181 ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
           ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 938 ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 984

[Close]

BLAST of Cmc08g0229791.1 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 452.6 bits (1163), Expect = 2.0e-123
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 784  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 843

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 844  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 903

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 904  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 963

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 964  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1010

[Close]

BLAST of Cmc08g0229791.1 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 452.6 bits (1163), Expect = 2.0e-123
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 452.6 bits (1163), Expect = 2.0e-123
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 452.6 bits (1163), Expect = 2.0e-123
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-49
Identity = 100/223 (44.84%), Postives = 143/223 (64.13%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MPFGL NAPATF   +N +    L+K  +VYLDDI+V+ST+++EH   L  VF+KL +  
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
           L ++ +KC F ++   FLGHV+    I     KI AI+ + +P    E+++FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEGFSKRASPLTELLKKDVHWN-WDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVET 180
           +F+  F+  A P+T+ LKK++  +  +PE  +AF  LK  + E P+L + D TK F + T
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVV 223
           DASD ALG VL Q+GHP++Y  R LN  E  Y+  EKE+LA+V
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIV 556

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 95/223 (42.60%), Postives = 137/223 (61.43%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MPFGL NAPATF   +N +    L+K  +VYLDDI+++ST++ EH + +Q VF KL +  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
           L ++ +KC F ++  NFLGH++    I     K+ AI  + +P    E+R+FLGL  YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEGFSKRASPLTELLKKDVHWNWDP-ECQAAFDDLKQAMMEGPLLGIADVTKPFEVET 180
           +F+  ++  A P+T  LKK    +    E   AF+ LK  ++  P+L + D  K F + T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVV 223
           DAS+ ALG VL QNGHPI++  R LN  E  Y+  EKE+LA+V
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIV 555

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.3e-44
Identity = 93/232 (40.09%), Postives = 135/232 (58.19%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MP+G++ APA F   IN +  E  +  VV Y+DDI+++S +  EH  H++ V QKLK   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKREKCSFAQEWINFLG-HVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYY 120
           L + + KC F Q  + F+G H+ E G    +E  I  +  W  PK+  ELR FLG  NY 
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQE-NIDKVLQWKQPKNRKELRQFLGSVNYL 653

Query: 121 RRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVET 180
           R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +ET
Sbjct: 654 RKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLET 713

Query: 181 DASDYALGGVLLQNG-----HPIAYEIRKLNAAERRYTVSEKEMLAVVHCLR 227
           DASD A+G VL Q       +P+ Y   K++ A+  Y+VS+KEMLA++  L+
Sbjct: 714 DASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.3e-44
Identity = 93/232 (40.09%), Postives = 135/232 (58.19%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MP+G++ APA F   IN +  E  +  VV Y+DDI+++S +  EH  H++ V QKLK   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKREKCSFAQEWINFLG-HVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYY 120
           L + + KC F Q  + F+G H+ E G    +E  I  +  W  PK+  ELR FLG  NY 
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQE-NIDKVLQWKQPKNRKELRQFLGSVNYL 653

Query: 121 RRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVET 180
           R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +ET
Sbjct: 654 RKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLET 713

Query: 181 DASDYALGGVLLQNG-----HPIAYEIRKLNAAERRYTVSEKEMLAVVHCLR 227
           DASD A+G VL Q       +P+ Y   K++ A+  Y+VS+KEMLA++  L+
Sbjct: 714 DASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.3e-44
Identity = 93/232 (40.09%), Postives = 135/232 (58.19%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MP+G++ APA F   IN +  E  +  VV Y+DDI+++S +  EH  H++ V QKLK   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKREKCSFAQEWINFLG-HVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYY 120
           L + + KC F Q  + F+G H+ E G    +E  I  +  W  PK+  ELR FLG  NY 
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQE-NIDKVLQWKQPKNRKELRQFLGSVNYL 653

Query: 121 RRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVET 180
           R+F+   S+   PL  LLKKDV W W P    A +++KQ ++  P+L   D +K   +ET
Sbjct: 654 RKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLET 713

Query: 181 DASDYALGGVLLQNG-----HPIAYEIRKLNAAERRYTVSEKEMLAVVHCLR 227
           DASD A+G VL Q       +P+ Y   K++ A+  Y+VS+KEMLA++  L+
Sbjct: 714 DASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.3e-124
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 758 MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 817

Query: 61  LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
           LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 818 LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 877

Query: 121 RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
           RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 878 RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDGLKQALMEGPLLGIADVTKPFEVETD 937

Query: 181 ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
           ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 938 ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 984

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 9.7e-124
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 9.7e-124
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 9.7e-124
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 9.7e-124
Identity = 219/227 (96.48%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1    MPFGLTNAPATFCTLINQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATFCTL+NQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQEWINFLGHVIECGRIGMEEGKIVAIRDWTMPKSVSELRSFLGLANYYR 120
            LYVKREKCSFAQE INFLGHVIECGRIGMEEGKI AIRDW MPKSVSELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGPLLGIADVTKPFEVETD 180
            RFVEGFSKRASPLTELLKKDVHWNWDPECQ AFD LKQA+MEGPLLGIADVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHPIAYEIRKLNAAERRYTVSEKEMLAVVHCLRA 228
            ASDYALGGVLLQNGHPIAYE RKLNAAERRYTVSEKEMLAVVHCLRA
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

[Close]

BLAST of Cmc08g0229791.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.6e-22
Identity = 54/131 (41.22%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 47  DHLQKVFQKLKENQLYVKREKCSFAQEWINFLG--HVIECGRIGMEEGKIVAIRDWTMPK 106
           +HL  V Q  +++Q Y  R+KC+F Q  I +LG  H+I    +  +  K+ A+  W  PK
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 107 SVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDDLKQAMMEGP 166
           + +ELR FLGL  YYRRFV+ + K   PLTELLKK+    W      AF  LK A+   P
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLP 121

Query: 167 LLGIADVTKPF 176
           +L + D+  PF
Sbjct: 122 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc08g0229791.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07954.1	6.9e-124	96.92	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	2.0e-123	96.48	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	2.0e-123	96.48	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	2.0e-123	96.48	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	2.0e-123	96.48	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0229791.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	4.4e-49	44.84	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.7e-45	42.60	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	7.3e-44	40.09	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.3e-44	40.09	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	7.3e-44	40.09	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0229791.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	3.3e-124	96.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	9.7e-124	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	9.7e-124	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	9.7e-124	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	9.7e-124	96.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of Cmc08g0229791.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.6e-22	41.22	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..184 e-value: 2.2E-29 score: 103.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 6.3E-34 score: 118.7
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..226 e-value: 5.4E-27 score: 93.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 2.2E-18 score: 66.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 12.893421
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..224
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..224
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 5.34291E-41 score: 136.186
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..226

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc08g0229791	Cmc08g0229791	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0229791.1-exon	Cmc08g0229791.1-exon-CMiso1.1chr08:25219605..25220288	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0229791.1-cds	Cmc08g0229791.1-cds-CMiso1.1chr08:25219605..25220288	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc08g0229791.1	Cmc08g0229791.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding