Cmc08g0225341.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc08g0225341.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonucleoside-diphosphate reductase
LocationCMiso1.1chr08: 16296656 .. 16297323 (-)
Sequence length338
RNA-Seq ExpressionCmc08g0225341.1
SyntenyCmc08g0225341.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGAATGCAAGAATGGTTGTGGGGAATTTAGAATGGAGGCTGTGGGTTATAAGGAATCTGAGGCCATGAGTTTCAAGTAATTTCTTCCCTCTTTATTCTTAGAAGAAATGTATATATGTTGTGAAGGAATTTCTTACTCTGGGTTTTGCTTATTCTCAATATTTTCTTTCTCTTTAGGCCCTTACAACGTAAAGATGCTTGATTTTGAGGGTTTTGTTTATTCTCAATAGTTTATTGTTATTTACATTGTATTTTCACGTCATATATGTCTAATATGATGGAATACACTCAAATGGATATGCATATGATGTGAGTTTGATAGAAATTTCTGTATTTTGGGATTTTACTCGTTTCGTTTGTCTTATCTACTTTGTTAATTTGTGTTTTAGTTCATTTAATATTCTAGTTTATTGCTGCACACAACATGTTCGATAGAACTCCTCAGTTAGATTATTCTTCCAACGATGTATATGGTGAAACGAGATGGTCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGAAAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

mRNA sequence

AAGAAGAATGCAAGAATGGTTGTGGGGAATTTAGAATGGAGGCTGTGGGTTATAAGGAATCTGAGGCCATGAGTTTCAATTTATTGCTGCACACAACATGTTCGATAGAACTCCTCAGTTAGATTATTCTTCCAACGATGTATATGGTGAAACGAGATGGTCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGAAAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

Coding sequence (CDS)

ATGTATATGGTGAAACGAGATGGTCGTCAAGAAGCAGTGCATTTCGACAAGATCACTGCCCGTCTGAAGAAACTAAGTTATGGCCTCAACATCGATCAATGTGATCCAGTTTTGGTCTCCCAGAAAGTCTGTGTTGGAGTTTACAAGGGCATACCACTAGCCAGCTTGATGAATTGGCCGTTGAAATGGTTGCTACTATGA

Protein sequence

MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWPLKWLLL
Homology
[Close]
BLAST of Cmc08g0225341.1 vs. NCBI nr
Match: TYK14136.1 (ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 7.1e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRD RQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 67
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]
BLAST of Cmc08g0225341.1 vs. NCBI nr
Match: KAA0056131.1 (ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 9.3e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQ VCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 67
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]
BLAST of Cmc08g0225341.1 vs. NCBI nr
Match: GFZ14655.1 (ribonucleotide reductase 1 [Actinidia rufa])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. NCBI nr
Match: GFY91178.1 (ribonucleotide reductase 1 [Actinidia rufa])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. NCBI nr
Match: XP_008440987.1 (PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis melo] >KAA0025571.1 ribonucleoside-diphosphate reductase large subunit [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy Swiss-Prot
Match: Q9SJ20 (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=3702 GN=RNR1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.2e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQE VHFDKITARLKKLSYGL+ D CDPVLV+QKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy Swiss-Prot
Match: Q03604 (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans OX=6239 GN=rnr-1 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 2  YMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMN 59
          Y+VKRDGR+E VHFDKIT+R++KLSYGLN+D  DPV V+ KV  G+YKG+    L N
Sbjct: 8  YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDN 64

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy Swiss-Prot
Match: Q9UW15 (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+ KRDGRQE V FDKITAR+ +L YGL+++  DPV ++QKV  GVY G+  A L
Sbjct: 1  MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy Swiss-Prot
Match: P48591 (Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster OX=7227 GN=RnrL PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMN 59
          +Y++KRDGRQE VHFDKIT+R++KL Y LN+D  DPV ++ +V  G+Y G+    L N
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDN 69

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy Swiss-Prot
Match: P36602 (Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdc22 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMN 59
          M++ KRDGRQE V FDKITAR+ +L YGL+ D  DPV ++QKV  GVY G+    L N
Sbjct: 1  MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDN 58

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy TrEMBL
Match: A0A5D3CUQ2 (Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00040 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRD RQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDDRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 67
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy TrEMBL
Match: A0A5A7URH2 (Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00100 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASLMNWP 60
          MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQ VCVGVYKGIPLASLMNWP
Sbjct: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQIVCVGVYKGIPLASLMNWP 60

Query: 61 LKWLLL 67
          LKWLLL
Sbjct: 61 LKWLLL 66

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy TrEMBL
Match: A0A5D3CLK7 (Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00200 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-19
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy TrEMBL
Match: A0A5A7SMV6 (Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00600 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-19
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. ExPASy TrEMBL
Match: A0A7J0GUY0 (Ribonucleoside-diphosphate reductase OS=Actinidia rufa OX=165716 GN=Acr_24g0008450 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-19
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQEAVHFDKITARLKKLSYGL+ID CDPVLVSQKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQEAVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQL 56

[Close]
BLAST of Cmc08g0225341.1 vs. TAIR 10
Match: AT2G21790.1 (ribonucleotide reductase 1 )

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-21
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 1  MYMVKRDGRQEAVHFDKITARLKKLSYGLNIDQCDPVLVSQKVCVGVYKGIPLASL 57
          MY+VKRDGRQE VHFDKITARLKKLSYGL+ D CDPVLV+QKVC GVYKG+  + L
Sbjct: 1  MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQL 56

The following BLAST results are available for this feature:
BLAST of Cmc08g0225341.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14136.17.1e-2998.48ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuw... [more]
KAA0056131.19.3e-2998.48ribonucleoside-diphosphate reductase large subunit-like [Cucumis melo var. makuw... [more]
GFZ14655.11.9e-1883.93ribonucleotide reductase 1 [Actinidia rufa][more]
GFY91178.11.9e-1883.93ribonucleotide reductase 1 [Actinidia rufa][more]
XP_008440987.11.9e-1883.93PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis melo] >KA... [more]
BLAST of Cmc08g0225341.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJ208.2e-2078.57Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=37... [more]
Q036046.7e-1463.16Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans OX=... [more]
Q9UW152.8e-1258.93Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain AT... [more]
P485911.1e-1153.45Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster OX... [more]
P366021.4e-1156.90Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (s... [more]
BLAST of Cmc08g0225341.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CUQ23.4e-2998.48Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. mak... [more]
A0A5A7URH24.5e-2998.48Ribonucleoside-diphosphate reductase large subunit-like OS=Cucumis melo var. mak... [more]
A0A5D3CLK79.4e-1983.93Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SMV69.4e-1983.93Ribonucleoside-diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A7J0GUY09.4e-1983.93Ribonucleoside-diphosphate reductase OS=Actinidia rufa OX=165716 GN=Acr_24g00084... [more]
BLAST of Cmc08g0225341.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21790.15.8e-2178.57ribonucleotide reductase 1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039718Ribonucleoside-diphosphate reductase large subunitPANTHERPTHR11573RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAINcoord: 1..55
NoneNo IPR availablePANTHERPTHR11573:SF25RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASEcoord: 1..55
IPR005144ATP-cone domainPROSITEPS51161ATP_CONEcoord: 1..66
score: 10.203409
IPR008926Ribonucleotide reductase R1 subunit, N-terminalSUPERFAMILY48168R1 subunit of ribonucleotide reductase, N-terminal domaincoord: 6..62

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc08g0225341Cmc08g0225341gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0225341.1-exonCmc08g0225341.1-exon-CMiso1.1chr08:16296656..16296914exon
Cmc08g0225341.1-exonCmc08g0225341.1-exon-CMiso1.1chr08:16297245..16297323exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0225341.1-cdsCmc08g0225341.1-cds-CMiso1.1chr08:16296656..16296856CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0225341.1-five_prime_utrCmc08g0225341.1-five_prime_utr-CMiso1.1chr08:16296857..16296914five_prime_UTR
Cmc08g0225341.1-five_prime_utrCmc08g0225341.1-five_prime_utr-CMiso1.1chr08:16297245..16297323five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc08g0225341.1Cmc08g0225341.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009263 deoxyribonucleotide biosynthetic process
biological_process GO:0006260 DNA replication
cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor