Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAGCCCCCGAAGACGAGAATCGGAATTCCGGTTTCCAAATGCGTTAATATATCAATGGAGGAAGACATCGTCCTTCTTCTTTTGTTACCAGCGACGGAGCTCAGCCATGAAAGACGACTACGAGGTATGCGATTTTCTCTCTTTTAAGCCTCGAATTTCAACAACGCATATGTATCAACTCCCTCCCTCGCAGTTGTAGCTATCAATTATGCGATCTTGCGCTAAAATCTAGTTGCTCAAGTCATCCCCTCCCTTTCCTGTTCGATTACATAGTTGCAATCATGTTAAGGATATTTTCATGGTTGGATTAGATATATCAACTTTGTTCTACAACATTCACTGACTGTTGGAGTTTATGCTATCGAGAATTTGGTGGATTTGATATTTGGATTAAAACTTAAAGCCTGAGCTGGTAGATTAGTTATATATGTTGAACCTTTTTCAGTTTTCCTGAGGAGTTGATACAAGTCGATATTCTTTATTTCCTTTTTCAAAACTCGGAATGAAATGGTCATGTCCTTGCTAAAGAAATCGTGAATTACTGTTTTTCTATAGAAGTTTTCGTGTCTTTGGATTGGTGATCATGAGAAACCATATCTAGTTCATGTAATGGTGACTAATTGGGTTAGGAAATAGCATATGATGTTTTCCTTTTGAATTTATTTCACTTCAAAAAGTTCTTTTCTGATTCCTCATACATGTAAATTGCATTTACTAGTTTGATTCCACGTCGATGTCTACTTTGTGTATTGTATTTCCTTATTTTGCTAACTTGATTCCCCATGGATACTTTGTGTACTTGTAGTTTCTTGTTTTGCTACTTTGATTTTGCCTGTATTTGTCATGCGTGCTAGTTTCTATTTTTGCATCAAGATTCGCCATTCCTTTTTCTGCCTCCAAATTCTTGAAATCCTGTTCGTGCACAGAGGGCATAGTAAGATTTAAGTTTTTTAGGATGCAGTACGTCATGAATCAAAAGGCGAGATAAATCTATATCTTGTTTTGGACCCATCAGCATCAACCTTTCAGCCATAAGAACAGGATTCACCTTACGGGCAGTAGGTCCCTGGTGTTATGTCTAAGATTGTTTCCAGTCCTAACTGAAGTGTTCATGTGCCATCATGAGTTTTAGATAGGTTTCCTTGCCATCCATGTTTTCTACTTTTTGTGATGTCATTCTGATTATCAAGATGATAATGTGCAGACCGAAGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCCTGTATTGGTAATCAAGTAAGACCATGTGACTTGAGATTTCACTTGATGAAGGTAATAGTTTTTTCCTTGGATTTCTCATCTATAATTGTAGAAATCGTTTTCTTTTGATTGAGTTTATCTAAAATAGTATATGATGGAATAACTTTAATATTTCCAATTGCTTCTGTTAAATCACCGATTTGTGATTCAACATGGTATTAGAGTAGGAGATCATGGATTCAAACTGTCCTTCCTCTTCAATTATTATTGACTTCCACTTGTGTGATATTTTGTTAGAGCGATGATATGAGATTAAATTTATGTTCACCTATTAGCTTAAGTTTTGGAATCAATCGGTGATTTAACATGGTATAGAGTAGAAGGTTTTGTATTCAAACTCTCATAATGTAATGTCTTCCTTCCTGATTAATATTGATTTCTACTTGTTCCGTCTTCTATAAATCTTCAAACCTAAAAGTGAGGGGGAGTATTGTTATAGTATTGATATAACTAAATCCTATATAACCAATCAACTTAAACACCTCGGTTACTTGATGATTCAACAGTGTTTATATGTAATTGTGAATAACAGTCATTTTTATCAAAAGCTGCGCACTCGCTCACTTTGTTATCCCCTAATTCCTTTGCACTTAAACATATATATTTTTATCTCATAAGAACTATAGGACTTAAACATTCCAATCAATCACCACCTGCGTAGATTCATGGGAATCTTCTCTTTTACGCCTGTTAACAAATCAAAATATAAAAGATCATGGTTGTTATTTCTTCTTTCTACGTGTTCAGGAGATTTCTGGAATTCCAACTTCTTTAAAGAGGGAGTCATCCCAACAAGCAGCTTCTCCGGATGCCATGGGCGAATCGTCGAGCTCAGGTACAGCTAGACTTGATAAAGTAGATAGCTTTAGAGTGCTGTAGAGTTCGACGACTCCAAATTGAAGGCCTTCACTACATATGGGATTTACCTGCCTTGTCCTTGTCTAACCTTTTCTCTTATTTTAACTCTCATTGTTTGAAATTATGTTTGCTCTTTACCAAAAGATGGAAACTTTCACTATTTACATGTATTATTTCCTTGTAAGTTTTTGTATGACGAATATGAGTGCATTGGTAAAATTATGATGGTTATTGACTTATGAGTTGTAGGAAATGGGCTTGGGCTCGGGCCCAACCATTATTTGAAATGGGCTTCTGTCTATATATCCTATCTAATCTGTTCCCAAGTTGGTCCAAACAAAAGTAA
mRNA sequence
TACAGCCCCCGAAGACGAGAATCGGAATTCCGGTTTCCAAATGCGTTAATATATCAATGGAGGAAGACATCGTCCTTCTTCTTTTGTTACCAGCGACGGAGCTCAGCCATGAAAGACGACTACGAGACCGAAGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCCTGTATTGGTAATCAAGTAAGACCATGTGACTTGAGATTTCACTTGATGAAGGAGATTTCTGGAATTCCAACTTCTTTAAAGAGGGAGTCATCCCAACAAGCAGCTTCTCCGGATGCCATGGGCGAATCGTCGAGCTCAGGTACAGCTAGACTTGATAAAGTAGATAGCTTTAGAGTGCTGTAGAGTTCGACGACTCCAAATTGAAGGCCTTCACTACATATGGGATTTACCTGCCTTGTCCTTGTCTAACCTTTTCTCTTATTTTAACTCTCATTGTTTGAAATTATGTTTGCTCTTTACCAAAAGATGGAAACTTTCACTATTTACATGTATTATTTCCTTGTAAGTTTTTGTATGACGAATATGAGTGCATTGGTAAAATTATGATGGTTATTGACTTATGAGTTGTAGGAAATGGGCTTGGGCTCGGGCCCAACCATTATTTGAAATGGGCTTCTGTCTATATATCCTATCTAATCTGTTCCCAAGTTGGTCCAAACAAAAGTAA
Coding sequence (CDS)
ATGAAAGACGACTACGAGACCGAAGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCCTGTATTGGTAATCAAGTAAGACCATGTGACTTGAGATTTCACTTGATGAAGGAGATTTCTGGAATTCCAACTTCTTTAAAGAGGGAGTCATCCCAACAAGCAGCTTCTCCGGATGCCATGGGCGAATCGTCGAGCTCAGGTACAGCTAGACTTGATAAAGTAGATAGCTTTAGAGTGCTGTAG
Protein sequence
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQAASPDAMGESSSSGTARLDKVDSFRVL
Homology
BLAST of Cmc08g0217451.1 vs. NCBI nr
Match:
XP_008440839.1 (PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 uncharacterized protein E6C27_scaffold253G001540 [Cucumis melo var. makuwa] >TYK12534.1 uncharacterized protein E5676_scaffold255G001150 [Cucumis melo var. makuwa])
HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFRVL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87
BLAST of Cmc08g0217451.1 vs. NCBI nr
Match:
XP_004134854.1 (uncharacterized protein LOC101220806 [Cucumis sativus])
HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFRVL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87
BLAST of Cmc08g0217451.1 vs. NCBI nr
Match:
XP_038882825.1 (uncharacterized protein LOC120073967 [Benincasa hispida])
HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87
BLAST of Cmc08g0217451.1 vs. NCBI nr
Match:
XP_022926304.1 (uncharacterized protein LOC111433498 isoform X2 [Cucurbita moschata] >XP_023003947.1 uncharacterized protein LOC111497388 isoform X3 [Cucurbita maxima] >XP_023517285.1 uncharacterized protein LOC111781091 isoform X3 [Cucurbita pepo subsp. pepo] >KAG7026730.1 hypothetical protein SDJN02_10735 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87
BLAST of Cmc08g0217451.1 vs. NCBI nr
Match:
XP_022132812.1 (uncharacterized protein LOC111005574 [Momordica charantia])
HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADV+FQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVLFQYSKFVMACIGNQVRPCDLRFHLMKEISGLPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87
BLAST of Cmc08g0217451.1 vs. ExPASy TrEMBL
Match:
A0A5A7SN38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001150 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 6.3e-39
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFRVL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87
BLAST of Cmc08g0217451.1 vs. ExPASy TrEMBL
Match:
A0A1S3B238 (uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 6.3e-39
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFRVL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87
BLAST of Cmc08g0217451.1 vs. ExPASy TrEMBL
Match:
A0A0A0KHB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507080 PE=4 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQ+
Sbjct: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFRVL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87
BLAST of Cmc08g0217451.1 vs. ExPASy TrEMBL
Match:
A0A6J1KP11 (uncharacterized protein LOC111497388 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497388 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87
BLAST of Cmc08g0217451.1 vs. ExPASy TrEMBL
Match:
A0A6J1EEQ3 (uncharacterized protein LOC111433498 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433498 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQ+
Sbjct: 1 MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87
BLAST of Cmc08g0217451.1 vs. TAIR 10
Match:
AT4G35980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 129.0 bits (323), Expect = 1.8e-30
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0
Query: 1 MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQQ 60
M ++YE +E+KQAAADV+F YSKF MACIGN RP D+R HLMKEISG+PTSLK S +
Sbjct: 1 MTEEYEVDEQKQAAADVLFSYSKFAMACIGNHTRPTDMRLHLMKEISGMPTSLKGRDSSR 60
Query: 61 AASPDAMGESSSSGTARLDKVDSFRVL 88
AASPD +GESSSSGTARLDK DSFR L
Sbjct: 61 AASPDPLGESSSSGTARLDKTDSFRAL 87
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008440839.1 | 1.3e-38 | 98.85 | PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 unc... | [more] |
XP_004134854.1 | 2.9e-38 | 97.70 | uncharacterized protein LOC101220806 [Cucumis sativus] | [more] |
XP_038882825.1 | 3.8e-38 | 97.70 | uncharacterized protein LOC120073967 [Benincasa hispida] | [more] |
XP_022926304.1 | 8.4e-38 | 96.55 | uncharacterized protein LOC111433498 isoform X2 [Cucurbita moschata] >XP_0230039... | [more] |
XP_022132812.1 | 1.4e-37 | 95.40 | uncharacterized protein LOC111005574 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SN38 | 6.3e-39 | 98.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B238 | 6.3e-39 | 98.85 | uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=... | [more] |
A0A0A0KHB0 | 1.4e-38 | 97.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507080 PE=4 SV=1 | [more] |
A0A6J1KP11 | 4.1e-38 | 96.55 | uncharacterized protein LOC111497388 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1EEQ3 | 4.1e-38 | 96.55 | uncharacterized protein LOC111433498 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
Match Name | E-value | Identity | Description | |
AT4G35980.1 | 1.8e-30 | 72.41 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0217451.1-exon | Cmc08g0217451.1-exon-CMiso1.1chr08:6179598..6179723 | exon |
Cmc08g0217451.1-exon | Cmc08g0217451.1-exon-CMiso1.1chr08:6180804..6180917 | exon |
Cmc08g0217451.1-exon | Cmc08g0217451.1-exon-CMiso1.1chr08:6181653..6182109 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0217451.1-five_prime_utr | Cmc08g0217451.1-five_prime_utr-CMiso1.1chr08:6179598..6179705 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0217451.1-cds | Cmc08g0217451.1-cds-CMiso1.1chr08:6179706..6179723 | CDS |
Cmc08g0217451.1-cds | Cmc08g0217451.1-cds-CMiso1.1chr08:6180804..6180917 | CDS |
Cmc08g0217451.1-cds | Cmc08g0217451.1-cds-CMiso1.1chr08:6181653..6181784 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0217451.1-three_prime_utr | Cmc08g0217451.1-three_prime_utr-CMiso1.1chr08:6181785..6182109 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0217451.1 | Cmc08g0217451.1-protein | polypeptide |