Cmc08g0208471.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc08g0208471.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr08: 1250316 .. 1252150 (+)
Sequence length	1835
RNA-Seq Expression	Cmc08g0208471.1
Synteny	Cmc08g0208471.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGATAAAGTGATTTTTAATTAAGGAAAAAAAAGAGCCTAAATTACTATTTAGTTAAGCAAGGGAAGCAGAATCGCAATCCTTGAACCTCAAGAACTCTGAAAATTGGTAGCATTAGAGTGATGAGAGACACGAATTAGAAGGTTGATATATTGACGAAGAACTCAAGATCAACATCTCCCCAATGGAGTTATCAAATCAAGAATTGACCGATGAACACAAGAAAGATGAACTGATTGAGAAACTACTCACGTCATTGAGAAAAGAAAGAATGGAAACATTCCAGGTTGAGAGAAGATTGACGTCGGAGTTGTTCACTCTATGGAATCGGAACGAGGAAAAGCAAAAGAAAATGAGAGACAGACGCCTAGTGATCAAGGATGAAGGGACTACGTCTTCAAGAAAAAAAGGAAAAGAAAAACTAATTTCGGATTACCCTTTGGCAATATTAAATGATCTCATAGCGAGGTTCGTGGATTATGTAGATAATATGAAAGATATGACGACAATTACAAATACTCAGAAAACGGAAAATGGTTGGCTCGACTATTTTAAAGCTGGAATCGAAGTGTTTCGGTTAATAAATACAAATCTGAAGAAGTTATTGATAAAGGACGTGTCATGGATGAAGGAGGAAGACTCGGAAAACTACACACAAGTGTATGAAAAAATGTCTAGATTGGAGAAGATTAATGAAATCTTGGATGACTGTCAAGTTACAGAAAGTGACCTTACGACATCTGACTTCGAGGTTTGCAAACATGGCTTCCAAGAATGTGCAAAGGATTTGAATAAGTTGCTTGATGATATGGTACGATGGGAAGGCAAATTACAACATGAAATCAAAGATTACAACGCGGAATTGTTCGTCCAGTCAGACGTCATTGAAAGCCATTGCGGACCCGGCCACCGTAATATCGAAGAAGAAAATCACGAAAATCTCCTTCAAGATGATAACCAGCCAAATGATCGGAAATTGATTAATAATCAGAAAGTCGAACAATATCTGCATCCATCGCATCCGCCTCTATCTTCGAAAAGGGCGAACCTGGAAGGAAGGAAAAGGAAGGATCGTGAAGCAGCTTTAGATTAAATAATATTTGATTCAAATTAAAGTTTGTAAGCAGTTTTAGATTTTTCTTTTTCAGTTTTGTAGAGCTATAAAAGAGGAATTAGAATAATCAAAATCTCCACGAATGTATGTGTATACATGTATAGTGACTTCTCCAAAGGCAACATCACTCCATCCACAAAATTTGAGATTATATTAATAGTTCAAAAGAATCAAACATGTTTAAACTTCATCACGATCACGAAGACGAGGATCGTATATTTCGGAATGCTTTGAATTTATTACGGCAAACAACCCAGTACAAAATGAGCAACAAAAACAAAGGAAAAAGGGATTGGATGAGTTCGATTTGATCTCCCTTCAAACTGTGGTGTGGAAATTCAATAATTTCATCGATGATATGATCGGCCCGATATTTAATTACCATAATAATACAAAACGGTGGCGAGATTCGAAAAAGTGGAGGATAAGTTGAAATTTCTTCGGAAGGTAAATGATTTGCTGCTAAATTCCTCTAAAATTGTGGGCAAGTTACTGGAACTCATCCACAAGAATAATGGTGGAAAATTCGGTGACCAAAATCAAAACACATTCCTGAAATTGAAATTTGTGTTCAATTGATGGAGTTTGGTGCAGAATTTGTAGAACGATCAGGCATTGGGTGTCTGTTTAAAGAACAAAGCACTGAGTTATCATTATCAAGGCTTAATGGATCGAGGGAAAACTTGATGGTTATCCATTGGAGAATCATGAGACTTATTC

mRNA sequence

CTTTGATAAAGTGATTTTTAATTAAGGAAAAAAAAGAGCCTAAATTACTATTTAGTTAAGCAAGGGAAGCAGAATCGCAATCCTTGAACCTCAAGAACTCTGAAAATTGGTAGCATTAGAGTGATGAGAGACACGAATTAGAAGGTTGATATATTGACGAAGAACTCAAGATCAACATCTCCCCAATGGAGTTATCAAATCAAGAATTGACCGATGAACACAAGAAAGATGAACTGATTGAGAAACTACTCACGTCATTGAGAAAAGAAAGAATGGAAACATTCCAGGTTGAGAGAAGATTGACGTCGGAGTTGTTCACTCTATGGAATCGGAACGAGGAAAAGCAAAAGAAAATGAGAGACAGACGCCTAGTGATCAAGGATGAAGGGACTACGTCTTCAAGAAAAAAAGGAAAAGAAAAACTAATTTCGGATTACCCTTTGGCAATATTAAATGATCTCATAGCGAGGTTCGTGGATTATGTAGATAATATGAAAGATATGACGACAATTACAAATACTCAGAAAACGGAAAATGGTTGGCTCGACTATTTTAAAGCTGGAATCGAAGTGTTTCGGTTAATAAATACAAATCTGAAGAAGTTATTGATAAAGGACGTGTCATGGATGAAGGAGGAAGACTCGGAAAACTACACACAAGTGTATGAAAAAATGTCTAGATTGGAGAAGATTAATGAAATCTTGGATGACTGTCAAGTTACAGAAAGTGACCTTACGACATCTGACTTCGAGGTTTGCAAACATGGCTTCCAAGAATGTGCAAAGGATTTGAATAAGTTGCTTGATGATATGGTACGATGGGAAGGCAAATTACAACATGAAATCAAAGATTACAACGCGGAATTGTTCGTCCAGTCAGACGTCATTGAAAGCCATTGCGGACCCGGCCACCGTAATATCGAAGAAGAAAATCACGAAAATCTCCTTCAAGATGATAACCAGCCAAATGATCGGAAATTGATTAATAATCAGAAAGTCGAACAATATCTGCATCCATCGCATCCGCCTCTATCTTCGAAAAGGGCGAACCTGGAAGGAAGGAAAAGGAAGGATCGTGAAGCAGCTTTAGATTAAATAATATTTGATTCAAATTAAAGTTTGTAAGCAGTTTTAGATTTTTCTTTTTCAGTTTTGTAGAGCTATAAAAGAGGAATTAGAATAATCAAAATCTCCACGAATGTATGTGTATACATGTATAGTGACTTCTCCAAAGGCAACATCACTCCATCCACAAAATTTGAGATTATATTAATAGTTCAAAAGAATCAAACATGTTTAAACTTCATCACGATCACGAAGACGAGGATCGTATATTTCGGAATGCTTTGAATTTATTACGGCAAACAACCCAGTACAAAATGAGCAACAAAAACAAAGGAAAAAGGGATTGGATGAGTTCGATTTGATCTCCCTTCAAACTGTGGTGTGGAAATTCAATAATTTCATCGATGATATGATCGGCCCGATATTTAATTACCATAATAATACAAAACGGTGGCGAGATTCGAAAAAGTGGAGGATAAGTTGAAATTTCTTCGGAAGGTAAATGATTTGCTGCTAAATTCCTCTAAAATTGTGGGCAAGTTACTGGAACTCATCCACAAGAATAATGGTGGAAAATTCGGTGACCAAAATCAAAACACATTCCTGAAATTGAAATTTGTGTTCAATTGATGGAGTTTGGTGCAGAATTTGTAGAACGATCAGGCATTGGGTGTCTGTTTAAAGAACAAAGCACTGAGTTATCATTATCAAGGCTTAATGGATCGAGGGAAAACTTGATGGTTATCCATTGGAGAATCATGAGACTTATTC

Coding sequence (CDS)

ATGGAGTTATCAAATCAAGAATTGACCGATGAACACAAGAAAGATGAACTGATTGAGAAACTACTCACGTCATTGAGAAAAGAAAGAATGGAAACATTCCAGGTTGAGAGAAGATTGACGTCGGAGTTGTTCACTCTATGGAATCGGAACGAGGAAAAGCAAAAGAAAATGAGAGACAGACGCCTAGTGATCAAGGATGAAGGGACTACGTCTTCAAGAAAAAAAGGAAAAGAAAAACTAATTTCGGATTACCCTTTGGCAATATTAAATGATCTCATAGCGAGGTTCGTGGATTATGTAGATAATATGAAAGATATGACGACAATTACAAATACTCAGAAAACGGAAAATGGTTGGCTCGACTATTTTAAAGCTGGAATCGAAGTGTTTCGGTTAATAAATACAAATCTGAAGAAGTTATTGATAAAGGACGTGTCATGGATGAAGGAGGAAGACTCGGAAAACTACACACAAGTGTATGAAAAAATGTCTAGATTGGAGAAGATTAATGAAATCTTGGATGACTGTCAAGTTACAGAAAGTGACCTTACGACATCTGACTTCGAGGTTTGCAAACATGGCTTCCAAGAATGTGCAAAGGATTTGAATAAGTTGCTTGATGATATGGTACGATGGGAAGGCAAATTACAACATGAAATCAAAGATTACAACGCGGAATTGTTCGTCCAGTCAGACGTCATTGAAAGCCATTGCGGACCCGGCCACCGTAATATCGAAGAAGAAAATCACGAAAATCTCCTTCAAGATGATAACCAGCCAAATGATCGGAAATTGATTAATAATCAGAAAGTCGAACAATATCTGCATCCATCGCATCCGCCTCTATCTTCGAAAAGGGCGAACCTGGAAGGAAGGAAAAGGAAGGATCGTGAAGCAGCTTTAGATTAA

Protein sequence

MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDRRLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWLDYFKAGIEVFRLINTNLKKLLIKDVSWMKEEDSENYTQVYEKMSRLEKINEILDDCQVTESDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGPGHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAALD

Homology

[Close]

BLAST of Cmc08g0208471.1 vs. NCBI nr
Match: KAA0052573.1 (hypothetical protein E6C27_scaffold120G001780 [Cucumis melo var. makuwa] >TYK13252.1 hypothetical protein E5676_scaffold255G008700 [Cucumis melo var. makuwa])

HSP 1 Score: 593.6 bits (1529), Expect = 9.7e-166
Identity = 301/302 (99.67%), Postives = 301/302 (99.67%), Query Frame = 0


Query: 1   MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDR 60
           MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDR
Sbjct: 1   MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDR 60

Query: 61  RLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWL 120
           RLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWL
Sbjct: 61  RLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWL 120

Query: 121 DYFKAGIEVFRLINTNLKKLLIKDVSWMKEEDSENYTQVYEKMSRLEKINEILDDCQVTE 180
           DYFKAGIEVFRLINTNLKKLLIKDVSWMKEED ENYTQVYEKMSRLEKINEILDDCQVTE
Sbjct: 121 DYFKAGIEVFRLINTNLKKLLIKDVSWMKEEDPENYTQVYEKMSRLEKINEILDDCQVTE 180

Query: 181 SDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGP 240
           SDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGP
Sbjct: 181 SDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGP 240

Query: 241 GHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAA 300
           GHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAA
Sbjct: 241 GHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAA 300

Query: 301 LD 303
           LD
Sbjct: 301 LD 302

[Close]

BLAST of Cmc08g0208471.1 vs. ExPASy TrEMBL
Match: A0A5A7U9J9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008700 PE=4 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 4.7e-166
Identity = 301/302 (99.67%), Postives = 301/302 (99.67%), Query Frame = 0


Query: 1   MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDR 60
           MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDR
Sbjct: 1   MELSNQELTDEHKKDELIEKLLTSLRKERMETFQVERRLTSELFTLWNRNEEKQKKMRDR 60

Query: 61  RLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWL 120
           RLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWL
Sbjct: 61  RLVIKDEGTTSSRKKGKEKLISDYPLAILNDLIARFVDYVDNMKDMTTITNTQKTENGWL 120

Query: 121 DYFKAGIEVFRLINTNLKKLLIKDVSWMKEEDSENYTQVYEKMSRLEKINEILDDCQVTE 180
           DYFKAGIEVFRLINTNLKKLLIKDVSWMKEED ENYTQVYEKMSRLEKINEILDDCQVTE
Sbjct: 121 DYFKAGIEVFRLINTNLKKLLIKDVSWMKEEDPENYTQVYEKMSRLEKINEILDDCQVTE 180

Query: 181 SDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGP 240
           SDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGP
Sbjct: 181 SDLTTSDFEVCKHGFQECAKDLNKLLDDMVRWEGKLQHEIKDYNAELFVQSDVIESHCGP 240

Query: 241 GHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAA 300
           GHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAA
Sbjct: 241 GHRNIEEENHENLLQDDNQPNDRKLINNQKVEQYLHPSHPPLSSKRANLEGRKRKDREAA 300

Query: 301 LD 303
           LD
Sbjct: 301 LD 302

The following BLAST results are available for this feature:

BLAST of Cmc08g0208471.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052573.1	9.7e-166	99.67	hypothetical protein E6C27_scaffold120G001780 [Cucumis melo var. makuwa] >TYK132...	[more]

BLAST of Cmc08g0208471.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0208471.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9J9	4.7e-166	99.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc08g0208471.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..302

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc08g0208471	Cmc08g0208471	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0208471.1-exon	Cmc08g0208471.1-exon-CMiso1.1chr08:1250316..1252150	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0208471.1-five_prime_utr	Cmc08g0208471.1-five_prime_utr-CMiso1.1chr08:1250316..1250500	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0208471.1-cds	Cmc08g0208471.1-cds-CMiso1.1chr08:1250501..1251409	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0208471.1-three_prime_utr	Cmc08g0208471.1-three_prime_utr-CMiso1.1chr08:1251410..1252150	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc08g0208471.1	Cmc08g0208471.1-protein	polypeptide