Cmc08g0207671.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc08g0207671.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	F-box domain-containing protein
Location	CMiso1.1chr08: 784684 .. 785444 (-)
Sequence length	761
RNA-Seq Expression	Cmc08g0207671.1
Synteny	Cmc08g0207671.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTATGGGAGACTATGACTTCACAAAGGAGGGATTGAGTGTAGCAGTTTCGAAACTTCCATTGTTGGAGCATCTTGAAATTGAATCATTTATTATTGTACTTGATCCGGAAACTTTGAGAACTATTGGACGATGTGGCCCTTTATTAAAATCGCTGAAACTGAAAGATTTATGTCATATGTTAGGATTATTTATTTCTTCTGATGAAGACGCACTTGCTATTGCTCAAACTATGCCCAAGTTACATCACCTTGAAATTGTGGGCAATCGCATTACTAACTTTGGTTTGCATGCCCTTCTTGATAGTTGTTCTGATTTACAATCTCTTGACTTACGCAAGTGTAGATATTTAGATTTTGAGGAACGCTTGAAGAAGAAATGTTCTGAAAGGATCAAAACTTTGCGTCTGCCGGCTGACGAACCTGTTAACGGAAGTACCTTCCAATGGTTAACCTCCGGTTTCCCCTACAATTTGCCATTCCCATGATTTCTCTTATCTCAGATTTTTATCTCGATGATGATCTTGGTATGTTTTATTTTTAGAATTGGGGCATTTTTTGTGGTTGATGCGATGAAGTTATTTTGTTAGAAAGGTCGAAACTGGGATAGTTTTGTTAGCTTTGAGTGCTATGTAGTCGAGAATTATTAATATTGATGTGTGCACATCAGGATCAGCAAAAACTCTAAACTCTAATGGTAAAAAGTGGTTATGACGTCCTTTCGTATATTTTAGGTTATGGTATTTTGAGATTTTTTATTT

mRNA sequence

GGCTTATGGGAGACTATGACTTCACAAAGGAGGGATTGAGTGTAGCAGTTTCGAAACTTCCATTGTTGGAGCATCTTGAAATTGAATCATTTATTATTGTACTTGATCCGGAAACTTTGAGAACTATTGGACGATGTGGCCCTTTATTAAAATCGCTGAAACTGAAAGATTTATGTCATATGTTAGGATTATTTATTTCTTCTGATGAAGACGCACTTGCTATTGCTCAAACTATGCCCAAGTTACATCACCTTGAAATTGTGGGCAATCGCATTACTAACTTTGGTTTGCATGCCCTTCTTGATAGTTGTTCTGATTTACAATCTCTTGACTTACGCAAGTGTAGATATTTAGATTTTGAGGAACGCTTGAAGAAGAAATGTTCTGAAAGGATCAAAACTTTGCGTCTGCCGGCTGACGAACCTGTTAACGGAAGTACCTTCCAATGGTTAACCTCCGGTTTCCCCTACAATTTGCCATTCCCATGATTTCTCTTATCTCAGATTTTTATCTCGATGATGATCTTGGTATGTTTTATTTTTAGAATTGGGGCATTTTTTGTGGTTGATGCGATGAAGTTATTTTGTTAGAAAGGTCGAAACTGGGATAGTTTTGTTAGCTTTGAGTGCTATGTAGTCGAGAATTATTAATATTGATGTGTGCACATCAGGATCAGCAAAAACTCTAAACTCTAATGGTAAAAAGTGGTTATGACGTCCTTTCGTATATTTTAGGTTATGGTATTTTGAGATTTTTTATTT

Coding sequence (CDS)

ATGGGAGACTATGACTTCACAAAGGAGGGATTGAGTGTAGCAGTTTCGAAACTTCCATTGTTGGAGCATCTTGAAATTGAATCATTTATTATTGTACTTGATCCGGAAACTTTGAGAACTATTGGACGATGTGGCCCTTTATTAAAATCGCTGAAACTGAAAGATTTATGTCATATGTTAGGATTATTTATTTCTTCTGATGAAGACGCACTTGCTATTGCTCAAACTATGCCCAAGTTACATCACCTTGAAATTGTGGGCAATCGCATTACTAACTTTGGTTTGCATGCCCTTCTTGATAGTTGTTCTGATTTACAATCTCTTGACTTACGCAAGTGTAGATATTTAGATTTTGAGGAACGCTTGAAGAAGAAATGTTCTGAAAGGATCAAAACTTTGCGTCTGCCGGCTGACGAACCTGTTAACGGAAGTACCTTCCAATGGTTAACCTCCGGTTTCCCCTACAATTTGCCATTCCCATGA

Protein sequence

MGDYDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP

Homology

[Close]

BLAST of Cmc08g0207671.1 vs. NCBI nr
Match: XP_011658525.1 (putative F-box/LRR-repeat protein 23 [Cucumis sativus] >KGN49440.1 hypothetical protein Csa_003071 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 9.7e-64
Identity = 129/155 (83.23%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 6   FTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFIS 65
           FTKE L VAVS+LPLLEHLEI+SFII LDPETLRTIGRC  LLKSLKLK+LC+ +G   S
Sbjct: 121 FTKEVLGVAVSELPLLEHLEIQSFIIGLDPETLRTIGRCCHLLKSLKLKELCY-IGFISS 180

Query: 66  SDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKK 125
           SDEDALAIA+TMP LHHLEIVGN ITNFGLHALLDSCS LQSLDLRKC YLDF+E LKKK
Sbjct: 181 SDEDALAIAETMPNLHHLEIVGNSITNFGLHALLDSCSGLQSLDLRKCMYLDFDEHLKKK 240

Query: 126 CSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
           C +RIKTLRLP  EPV+GSTFQWLTSGFPYNLPFP
Sbjct: 241 CYQRIKTLRLPY-EPVDGSTFQWLTSGFPYNLPFP 273

[Close]

BLAST of Cmc08g0207671.1 vs. NCBI nr
Match: KAA0052509.1 (F-box protein SKIP19-like [Cucumis melo var. makuwa] >TYK13315.1 F-box protein SKIP19-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-49
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 61  GLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEE 120
           GLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEE
Sbjct: 88  GLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEE 147

Query: 121 RLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
            LKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP
Sbjct: 148 LLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 187

[Close]

BLAST of Cmc08g0207671.1 vs. NCBI nr
Match: XP_038883506.1 (F-box protein SKIP19-like [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-32
Identity = 78/140 (55.71%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 4   YDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF 63
           YD + EGL+ A+S+LPLLEHLEI  FI   D ETL+T+GRC PLLK LKL +  +     
Sbjct: 123 YDISDEGLTEAISRLPLLEHLEI--FIYSFDVETLKTVGRCCPLLKWLKLIEEQYWREDM 182

Query: 64  ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLK 123
           +++ E ALAIA+TMPKL HL+I+GN +TN GL A+LD C DL+SLDLR+C +L+   +L 
Sbjct: 183 VTNKE-ALAIAETMPKLRHLQIIGNGLTNMGLQAILDGCPDLESLDLRQCFHLNLNGQLG 242

Query: 124 KKCSERIKTLRLPADEPVNG 144
           K+C+ER K L LP D   NG
Sbjct: 243 KECAERFKVLHLPHDRLTNG 259

[Close]

BLAST of Cmc08g0207671.1 vs. NCBI nr
Match: XP_008439579.1 (PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-27
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 10  GLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKL-KDLCHMLGLFISSDE 69
           GL  AVSKLPLLE LEI  F+   D +TL T+G C PLLKSLKL +  C   G+    D 
Sbjct: 119 GLIKAVSKLPLLEQLEI--FLCCFDAKTLGTVGMCCPLLKSLKLNQQFCTGKGMV--CDR 178

Query: 70  DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSE 129
           +A+AIA+TMPKL HL+I+GN +++ GL A+LD C+DL+SLDLR+C  L FE +L K C E
Sbjct: 179 EAIAIAKTMPKLRHLQILGNALSDKGLQAILDGCTDLESLDLRQCFNLKFEGQLGKVCVE 238

Query: 130 RIKTLRLPAD 139
           +IKTL +P D
Sbjct: 239 KIKTLHMPHD 244

[Close]

BLAST of Cmc08g0207671.1 vs. NCBI nr
Match: KAG6581459.1 (F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 9   EGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 68
           EGL  AVSKLPLLE LEI   SF    D ETL T+G+C PLLKSLKL    +     +  
Sbjct: 131 EGLIKAVSKLPLLEDLEISFGSF----DVETLETLGQCRPLLKSLKLNRQFYRR---VEC 190

Query: 69  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 128
           D+ ALAIA+ MP L HL+I GN +TN GL A+LD C DL+SLDLR+C  L+   +L  KC
Sbjct: 191 DKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNLNLAGQLGAKC 250

Query: 129 SERIKTLRLPAD 139
           SE+IK LRLP D
Sbjct: 251 SEKIKNLRLPHD 255

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 63/135 (46.67%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 4   YDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF 63
           +  T EG++ AVSK+PLLE+LE+     +   E+LR IGR  P LK+LKL     ++   
Sbjct: 288 FPITDEGVAKAVSKVPLLEYLEVS--YCLFSGESLRDIGRSCPNLKTLKLNRAPEIMFSN 347

Query: 64  ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLK 123
              D++A AIA++MP+L HL+++GN +TN GL+A+LD C  L+ LDLR+C  ++    LK
Sbjct: 348 SGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLK 407

Query: 124 KKCSERIKTLRLPAD 139
           K+C ERIK LR P D
Sbjct: 408 KRCFERIKDLRCPND 420

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy Swiss-Prot
Match: Q9M0U8 (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-25
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF--- 66
           TK G+  A++K+PLLE LE+    I LD   L+ IG   P LK+LKL  L  +       
Sbjct: 153 TKLGVVNAIAKIPLLETLEVTHSCIKLD---LKAIGHACPQLKTLKLNSLGRLWPASDKY 212

Query: 67  ----------ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKC 126
                     +  D+DALAIA++MPKLHHL+++ NR+TN GL+A+LD C  L+ LD+RKC
Sbjct: 213 DSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKC 272

Query: 127 RYLDFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYN 157
             +     L+K+C E IK LR P D           T+ +PYN
Sbjct: 273 FRISLVGNLEKRCLEMIKELRRPGDS----------TADYPYN 302

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-22
Identity = 68/161 (42.24%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T +G+   + KLPLLE L I    I LD   L+ IG   P LK+LKL  L   L   IS 
Sbjct: 147 TNKGVMNGIEKLPLLETLVIFHSSIKLD---LKAIGHACPQLKTLKLNSLGSELAHDISQ 206

Query: 67  ---------DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQS-LDLRKCRYL 126
                    D+DALAIA++MPKL HL+++GN +TN GL+A+LD C  L+  LD+RKC  +
Sbjct: 207 VGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNI 266

Query: 127 DFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNL 158
           +    L+K+C +RIK LR P D           T+ +PY++
Sbjct: 267 NLVGNLEKRCMKRIKELRRPHDS----------TADYPYSI 294

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy Swiss-Prot
Match: Q9M0U6 (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-22
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T  G+  A+ KLPLLE LE+      ++ E  +TIG+  P LK+LKL      L     S
Sbjct: 137 TSVGIFEAIVKLPLLEELEL--LYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLN---ES 196

Query: 67  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 126
           D DALAIA TMP L HL+++ N +TN GL+A+LD C  L+ LDLR+C  ++    L+++C
Sbjct: 197 DNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQC 256

Query: 127 SERIKTLRLPAD 139
            ERIK  R P D
Sbjct: 257 LERIKDFRCPND 263

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFI 66
           T +G   AV KLP LE LE+   SF +    E+LR +G+C   +K+LKL           
Sbjct: 129 TDDGFVEAVVKLP-LEELELSYCSFSV----ESLRVVGQCCLNMKTLKLNKHPQK----- 188

Query: 67  SSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKK 126
            +D+DALAIA+TMPKL HL++ GN +++ GL+A+LD+CS+L+ LDLR+C  ++    L+K
Sbjct: 189 ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQK 248

Query: 127 KCSERIKTLRLPAD 139
           +C E +K +R P D
Sbjct: 249 RCFESVKVVRHPND 252

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy TrEMBL
Match: A0A0A0KI84 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G525270 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.7e-64
Identity = 129/155 (83.23%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 6   FTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFIS 65
           FTKE L VAVS+LPLLEHLEI+SFII LDPETLRTIGRC  LLKSLKLK+LC+ +G   S
Sbjct: 121 FTKEVLGVAVSELPLLEHLEIQSFIIGLDPETLRTIGRCCHLLKSLKLKELCY-IGFISS 180

Query: 66  SDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKK 125
           SDEDALAIA+TMP LHHLEIVGN ITNFGLHALLDSCS LQSLDLRKC YLDF+E LKKK
Sbjct: 181 SDEDALAIAETMPNLHHLEIVGNSITNFGLHALLDSCSGLQSLDLRKCMYLDFDEHLKKK 240

Query: 126 CSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
           C +RIKTLRLP  EPV+GSTFQWLTSGFPYNLPFP
Sbjct: 241 CYQRIKTLRLPY-EPVDGSTFQWLTSGFPYNLPFP 273

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy TrEMBL
Match: A0A5D3CNY7 (F-box protein SKIP19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009390 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.6e-50
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 61  GLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEE 120
           GLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEE
Sbjct: 88  GLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEE 147

Query: 121 RLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
            LKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP
Sbjct: 148 LLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 187

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy TrEMBL
Match: A0A1S3AZR6 (putative F-box/LRR-repeat protein 9 OS=Cucumis melo OX=3656 GN=LOC103484332 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 10  GLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKL-KDLCHMLGLFISSDE 69
           GL  AVSKLPLLE LEI  F+   D +TL T+G C PLLKSLKL +  C   G+    D 
Sbjct: 119 GLIKAVSKLPLLEQLEI--FLCCFDAKTLGTVGMCCPLLKSLKLNQQFCTGKGMV--CDR 178

Query: 70  DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSE 129
           +A+AIA+TMPKL HL+I+GN +++ GL A+LD C+DL+SLDLR+C  L FE +L K C E
Sbjct: 179 EAIAIAKTMPKLRHLQILGNALSDKGLQAILDGCTDLESLDLRQCFNLKFEGQLGKVCVE 238

Query: 130 RIKTLRLPAD 139
           +IKTL +P D
Sbjct: 239 KIKTLHMPHD 244

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy TrEMBL
Match: A0A2P2JMC0 (Uncharacterized protein MANES_14G135100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.6e-27
Identity = 74/157 (47.13%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 4   YDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF 63
           Y  T +GLS   +K PLLE LEI      L  E+L  +GRC PLL++LKL    + L   
Sbjct: 142 YSITDDGLSGLAAKAPLLEELEIS--YCSLSKESLEVVGRCCPLLRTLKLNCQGYKLP-H 201

Query: 64  ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLK 123
           I  DE+ALAIA+TMP LHHL+I GN++TN G+ A+LD C  L+SLDLR+C  ++ E    
Sbjct: 202 IECDEEALAIARTMPGLHHLQIFGNKLTNDGVQAILDGCPHLESLDLRQCFNVNLEGNFG 261

Query: 124 KKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
           K+CSERIK LR P D           T+ +P++L  P
Sbjct: 262 KRCSERIKDLRRPDDS----------TNDYPFDLEIP 285

[Close]

BLAST of Cmc08g0207671.1 vs. ExPASy TrEMBL
Match: A0A6J1EGI8 (F-box protein SKIP19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433172 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 9   EGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 68
           EGL  AVSKLPLLE LEI   SF    D ETL T+G+C PLLKSLKL    +     +  
Sbjct: 131 EGLIKAVSKLPLLEDLEISFGSF----DVETLETLGQCRPLLKSLKLNRQFYRR---VEC 190

Query: 69  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 128
           D+ ALAIA+ MP L HL+I GN +TN GL A+LD C DL+SLDLR+C  L+   +L  KC
Sbjct: 191 DKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNLNLAGQLGAKC 250

Query: 129 SERIKTLRLPAD 139
           SE+IK LRLP D
Sbjct: 251 SEKIKNLRLPHD 255

[Close]

BLAST of Cmc08g0207671.1 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-26
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF--- 66
           TK G+  A++K+PLLE LE+    I LD   L+ IG   P LK+LKL  L  +       
Sbjct: 153 TKLGVVNAIAKIPLLETLEVTHSCIKLD---LKAIGHACPQLKTLKLNSLGRLWPASDKY 212

Query: 67  ----------ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKC 126
                     +  D+DALAIA++MPKLHHL+++ NR+TN GL+A+LD C  L+ LD+RKC
Sbjct: 213 DSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKC 272

Query: 127 RYLDFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYN 157
             +     L+K+C E IK LR P D           T+ +PYN
Sbjct: 273 FRISLVGNLEKRCLEMIKELRRPGDS----------TADYPYN 302

[Close]

BLAST of Cmc08g0207671.1 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 68/161 (42.24%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T +G+   + KLPLLE L I    I LD   L+ IG   P LK+LKL  L   L   IS 
Sbjct: 147 TNKGVMNGIEKLPLLETLVIFHSSIKLD---LKAIGHACPQLKTLKLNSLGSELAHDISQ 206

Query: 67  ---------DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQS-LDLRKCRYL 126
                    D+DALAIA++MPKL HL+++GN +TN GL+A+LD C  L+  LD+RKC  +
Sbjct: 207 VGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNI 266

Query: 127 DFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNL 158
           +    L+K+C +RIK LR P D           T+ +PY++
Sbjct: 267 NLVGNLEKRCMKRIKELRRPHDS----------TADYPYSI 294

[Close]

BLAST of Cmc08g0207671.1 vs. TAIR 10
Match: AT4G05490.1 (RNI-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-23
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T  G+  A+ KLPLLE LE+      ++ E  +TIG+  P LK+LKL      L     S
Sbjct: 137 TSVGIFEAIVKLPLLEELEL--LYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLN---ES 196

Query: 67  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 126
           D DALAIA TMP L HL+++ N +TN GL+A+LD C  L+ LDLR+C  ++    L+++C
Sbjct: 197 DNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQC 256

Query: 127 SERIKTLRLPAD 139
            ERIK  R P D
Sbjct: 257 LERIKDFRCPND 263

[Close]

BLAST of Cmc08g0207671.1 vs. TAIR 10
Match: AT5G52480.1 (RNI-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 5   DFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFI 64
           + T +G   AV KLP+LE LE+    I L  E+++  G   P LK+L L  L      ++
Sbjct: 63  EITDDGFVQAVVKLPMLEELEVSG--ISLSGESMKLAGLSCPNLKTLMLNRL-----FYL 122

Query: 65  SSDE---DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEER 124
           SSD+   DA+AIA++MPKL HL++ GN++T  GL+A+LD C  L+ LDLR+C  ++    
Sbjct: 123 SSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGN 182

Query: 125 LKKKCSERIKTLR-----LPADEPVNGST--FQW 149
           L+K+C E+IK LR       AD P +  T  F W
Sbjct: 183 LEKRCFEKIKDLRRHNDSTSADYPFSFETYYFHW 207

[Close]

BLAST of Cmc08g0207671.1 vs. TAIR 10
Match: AT5G52480.2 (RNI-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 5   DFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFI 64
           + T +G   AV KLP+LE LE+    I L  E+++  G   P LK+L L  L      ++
Sbjct: 25  EITDDGFVQAVVKLPMLEELEVSG--ISLSGESMKLAGLSCPNLKTLMLNRL-----FYL 84

Query: 65  SSDE---DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEER 124
           SSD+   DA+AIA++MPKL HL++ GN++T  GL+A+LD C  L+ LDLR+C  ++    
Sbjct: 85  SSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGN 144

Query: 125 LKKKCSERIKTLR-----LPADEPVNGST--FQW 149
           L+K+C E+IK LR       AD P +  T  F W
Sbjct: 145 LEKRCFEKIKDLRRHNDSTSADYPFSFETYYFHW 169

The following BLAST results are available for this feature:

BLAST of Cmc08g0207671.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658525.1	9.7e-64	83.23	putative F-box/LRR-repeat protein 23 [Cucumis sativus] >KGN49440.1 hypothetical ...	[more]
KAA0052509.1	1.4e-49	99.00	F-box protein SKIP19-like [Cucumis melo var. makuwa] >TYK13315.1 F-box protein S...	[more]
XP_038883506.1	4.4e-32	55.71	F-box protein SKIP19-like [Benincasa hispida]	[more]
XP_008439579.1	5.5e-27	56.15	PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo]	[more]
KAG6581459.1	2.1e-26	56.82	F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cmc08g0207671.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9V9	1.8e-25	46.67	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9M0U8	5.4e-25	41.72	Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE...	[more]
Q9M0U7	1.9e-22	42.24	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]
Q9M0U6	5.6e-22	45.45	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]
Q9M0U9	1.4e-20	44.03	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]

BLAST of Cmc08g0207671.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI84	4.7e-64	83.23	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G525270 PE=4 ...	[more]
A0A5D3CNY7	6.6e-50	99.00	F-box protein SKIP19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AZR6	2.7e-27	56.15	putative F-box/LRR-repeat protein 9 OS=Cucumis melo OX=3656 GN=LOC103484332 PE=4...	[more]
A0A2P2JMC0	4.6e-27	47.13	Uncharacterized protein MANES_14G135100 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]
A0A6J1EGI8	1.0e-26	56.82	F-box protein SKIP19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114331...	[more]

BLAST of Cmc08g0207671.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05470.1	3.8e-26	41.72	RNI-like superfamily protein	[more]
AT4G05475.1	1.4e-23	42.24	RNI-like superfamily protein	[more]
AT4G05490.1	4.0e-23	45.45	RNI-like superfamily protein	[more]
AT5G52480.1	2.6e-22	41.56	RNI-like superfamily protein	[more]
AT5G52480.2	2.6e-22	41.56	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 2..143 e-value: 2.0E-18 score: 68.0
None	No IPR available	PANTHER	PTHR38926	F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 4..139
None	No IPR available	PANTHER	PTHR38926:SF2	F-BOX/LRR-REPEAT PROTEIN 21-RELATED	coord: 4..139
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 14..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc08g0207671	Cmc08g0207671	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0207671.1-exon	Cmc08g0207671.1-exon-CMiso1.1chr08:784684..785444	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0207671.1-three_prime_utr	Cmc08g0207671.1-three_prime_utr-CMiso1.1chr08:784684..784956	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0207671.1-cds	Cmc08g0207671.1-cds-CMiso1.1chr08:784957..785439	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0207671.1-five_prime_utr	Cmc08g0207671.1-five_prime_utr-CMiso1.1chr08:785440..785444	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc08g0207671.1	Cmc08g0207671.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0003676	nucleic acid binding