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Cmc05g0129181.1 (mRNA) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAGTAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCATACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCATTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGACAATGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATTCTGATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTATTGGGAGGATATTGA ATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAGTAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCATACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCATTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGACAATGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATTCTGATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTATTGGGAGGATATTGA ATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAGTAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCATACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCATTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGACAATGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATTCTGATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTATTGGGAGGATATTGA MVGADCILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLGGY Homology
BLAST of Cmc05g0129181.1 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 338.2 bits (866), Expect = 4.2e-89 Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74 Identity = 141/151 (93.38%), Postives = 144/151 (95.36%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. NCBI nr
Match: KAA0036644.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 264.2 bits (674), Expect = 7.7e-67 Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. NCBI nr
Match: KAA0049794.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66 Identity = 125/135 (92.59%), Postives = 129/135 (95.56%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. NCBI nr
Match: TYK22837.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 261.5 bits (667), Expect = 5.0e-66 Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29 Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22 Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 3.5e-22 Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21 Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 3.3e-20 Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89 Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75 Identity = 141/151 (93.38%), Postives = 144/151 (95.36%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy TrEMBL
Match: A0A5A7SZD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00130 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 3.7e-67 Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy TrEMBL
Match: A0A5A7U3G0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001560 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66 Identity = 125/135 (92.59%), Postives = 129/135 (95.56%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. ExPASy TrEMBL
Match: A0A5D3DGL6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00190 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 2.4e-66 Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 2.3e-21 Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 0
BLAST of Cmc05g0129181.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 86.3 bits (212), Expect = 2.7e-17 Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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