Cmc05g0129181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0129181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr05: 6867218 .. 6867739 (+)
RNA-Seq Expression	Cmc05g0129181
Synteny	Cmc05g0129181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAGTAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCATACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCATTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGACAATGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATTCTGATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTATTGGGAGGATATTGA

mRNA sequence

ATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAGTAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCATACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCATTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGACAATGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATTCTGATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTATTGGGAGGATATTGA

Coding sequence (CDS)

ATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAGTAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCATACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCATTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGACAATGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATTCTGATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTATTGGGAGGATATTGA

Protein sequence

MVGADCILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLGGY

Homology

[Close]

BLAST of Cmc05g0129181 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 338.2 bits (866), Expect = 4.2e-89
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1    MVGADCILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTIL 60
            MVGADCILICLYVDDMLIFGTNMEL+TDTK+FLSSHFEMKDLGEA VILGVKIRKNKT L
Sbjct: 1019 MVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSL 1078

Query: 61   SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYT 120
            SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGD+VSQPEYAKIIGSVMYLMNYT
Sbjct: 1079 SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYT 1138

Query: 121  RPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLGGY 174
            RPDIAYAVSRLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KFPAVL GY
Sbjct: 1139 RPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

[Close]

BLAST of Cmc05g0129181 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 141/151 (93.38%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 23  MELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSP 82
           MEL+TDTKFFLSSHFEMKDLGEA VILGVKIRKNKT LSLCQSHYVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 83  VRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYH 142
           VRTPFDASKHL KNKGD+VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHN DRYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 143 WDALRHLLRYLKGTIDYCLHFNKFPAVLGGY 174
           WD LRHLLRYLKGTIDYCL+FNKFPAVL GY
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGY 151

[Close]

BLAST of Cmc05g0129181 vs. NCBI nr
Match: KAA0036644.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 7.7e-67
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 39  MKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 98
           MKDLGEA VILGVKIRKNKT LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 99  DNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTID 158
           D+VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHN +RYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 159 YCLHFNKFPAVLGGY 174
           YCLHF KFPAVL GY
Sbjct: 121 YCLHFKKFPAVLEGY 135

[Close]

BLAST of Cmc05g0129181 vs. NCBI nr
Match: KAA0049794.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 125/135 (92.59%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 39  MKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 98
           MKDLGEA  ILGVKIRKNKT LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADAILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 99  DNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTID 158
           D+VSQPEYAKIIG+VMYLMNYTRPDIAYA+SRLSRYTHN +RYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGNVMYLMNYTRPDIAYAISRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 159 YCLHFNKFPAVLGGY 174
           YCLHFNKFP VL GY
Sbjct: 121 YCLHFNKFPVVLEGY 135

[Close]

BLAST of Cmc05g0129181 vs. NCBI nr
Match: TYK22837.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.0e-66
Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 39  MKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 98
           MKDLGEA VILGVKIRKNKT LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 99  DNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTID 158
           D+VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHN +RYHWDALR LLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID 120

Query: 159 YCLHFNKFPAVLGGY 174
           YCLHFNKFP +L GY
Sbjct: 121 YCLHFNKFPTILEGY 135

[Close]

BLAST of Cmc05g0129181 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 0


Query: 7    ILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTI--LSLCQ 66
            I++ LYVDDMLI G +  L+   K  LS  F+MKDLG A  ILG+KI + +T   L L Q
Sbjct: 1003 IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQ 1062

Query: 67   SHYVEKILKKFDSFDVSPVRTPFDASKHLKKNK---------GDNVSQPEYAKIIGSVMY 126
              Y+E++L++F+  +  PV TP   + HLK +K           N+++  Y+  +GS+MY
Sbjct: 1063 EKYIERVLERFNMKNAKPVSTPL--AGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMY 1122

Query: 127  LMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLGGY 174
             M  TRPDIA+AV  +SR+  N  + HW+A++ +LRYL+GT   CL F     +L GY
Sbjct: 1123 AMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGY 1178

[Close]

BLAST of Cmc05g0129181 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 0


Query: 3    GADCILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSL 62
            G   I + +YVDD+LI G +  L+  T   LS  F +K+  + +  LG++ ++    L L
Sbjct: 1124 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1183

Query: 63   CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQP-EYAKIIGSVMYLMNYTR 122
             Q  Y   +L + +     PV TP   S  L  + G  +  P EY  I+GS+ YL  +TR
Sbjct: 1184 SQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLA-FTR 1243

Query: 123  PDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNK 166
            PD++YAV+RLS+Y H     HW+AL+ +LRYL GT D+ +   K
Sbjct: 1244 PDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1286

[Close]

BLAST of Cmc05g0129181 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-22
Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 3    GADCILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSL 62
            G   + + +YVDD+LI G +  L+ +T   LS  F +KD  E +  LG++ ++  T L L
Sbjct: 1141 GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1200

Query: 63   CQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQP-EYAKIIGSVMYLMNYTR 122
             Q  Y+  +L + +     PV TP   S  L    G  ++ P EY  I+GS+ YL  +TR
Sbjct: 1201 SQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLA-FTR 1260

Query: 123  PDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNK 166
            PDI+YAV+RLS++ H     H  AL+ +LRYL GT ++ +   K
Sbjct: 1261 PDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1303

[Close]

BLAST of Cmc05g0129181 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = 0


Query: 7    ILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSH 66
            I + LYVDD++I   +M  + + K +L   F M DL E    +G++I   +  + L QS 
Sbjct: 1082 IYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSA 1141

Query: 67   YVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAY 126
            YV+KIL KF+  + + V TP  +  + +    D         +IG +MY+M  TRPD+  
Sbjct: 1142 YVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTT 1201

Query: 127  AVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNK 166
            AV+ LSRY+  ++   W  L+ +LRYLKGTID  L F K
Sbjct: 1202 AVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKK 1240

[Close]

BLAST of Cmc05g0129181 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-20
Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 0


Query: 9   ICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSHYV 68
           + LYVDD+L+ G++  L+    F LSS F MKDLG  +  LG++I+ + + L L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 69  EKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAYAV 128
           E+IL      D  P+ TP     +   +        ++  I+G++ YL   TRPDI+YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 122

Query: 129 SRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNK 166
           + + +  H      +D L+ +LRY+KGTI + L+ +K
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 158

[Close]

BLAST of Cmc05g0129181 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1    MVGADCILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTIL 60
            MVGADCILICLYVDDMLIFGTNMEL+TDTK+FLSSHFEMKDLGEA VILGVKIRKNKT L
Sbjct: 1019 MVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSL 1078

Query: 61   SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYT 120
            SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGD+VSQPEYAKIIGSVMYLMNYT
Sbjct: 1079 SLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYT 1138

Query: 121  RPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLGGY 174
            RPDIAYAVSRLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KFPAVL GY
Sbjct: 1139 RPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

[Close]

BLAST of Cmc05g0129181 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 141/151 (93.38%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 23  MELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSP 82
           MEL+TDTKFFLSSHFEMKDLGEA VILGVKIRKNKT LSLCQSHYVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 83  VRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYH 142
           VRTPFDASKHL KNKGD+VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHN DRYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 143 WDALRHLLRYLKGTIDYCLHFNKFPAVLGGY 174
           WD LRHLLRYLKGTIDYCL+FNKFPAVL GY
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGY 151

[Close]

BLAST of Cmc05g0129181 vs. ExPASy TrEMBL
Match: A0A5A7SZD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00130 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.7e-67
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 39  MKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 98
           MKDLGEA VILGVKIRKNKT LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 99  DNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTID 158
           D+VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHN +RYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 159 YCLHFNKFPAVLGGY 174
           YCLHF KFPAVL GY
Sbjct: 121 YCLHFKKFPAVLEGY 135

[Close]

BLAST of Cmc05g0129181 vs. ExPASy TrEMBL
Match: A0A5A7U3G0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001560 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 125/135 (92.59%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 39  MKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 98
           MKDLGEA  ILGVKIRKNKT LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADAILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 99  DNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTID 158
           D+VSQPEYAKIIG+VMYLMNYTRPDIAYA+SRLSRYTHN +RYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGNVMYLMNYTRPDIAYAISRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 159 YCLHFNKFPAVLGGY 174
           YCLHFNKFP VL GY
Sbjct: 121 YCLHFNKFPVVLEGY 135

[Close]

BLAST of Cmc05g0129181 vs. ExPASy TrEMBL
Match: A0A5D3DGL6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00190 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.4e-66
Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 39  MKDLGEAYVILGVKIRKNKTILSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 98
           MKDLGEA VILGVKIRKNKT LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 99  DNVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTID 158
           D+VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHN +RYHWDALR LLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTID 120

Query: 159 YCLHFNKFPAVLGGY 174
           YCLHFNKFP +L GY
Sbjct: 121 YCLHFNKFPTILEGY 135

[Close]

BLAST of Cmc05g0129181 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-21
Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 0


Query: 9   ICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQSHYV 68
           + LYVDD+L+ G++  L+    F LSS F MKDLG  +  LG++I+ + + L L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 69  EKILKKFDSFDVSPVRTPFDASKHLKKNKGDNVSQPEYAKIIGSVMYLMNYTRPDIAYAV 128
           E+IL      D  P+ TP     +   +        ++  I+G++ YL   TRPDI+YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 122

Query: 129 SRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFNK 166
           + + +  H      +D L+ +LRY+KGTI + L+ +K
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 158

[Close]

BLAST of Cmc05g0129181 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-17
Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 0


Query: 6   CILICLYVDDMLIFGTNMELVTDTKFFLSSHFEMKDLGEAYVILGVKIRKNKTILSLCQS 65
           C+L+  YVDD++I   N   V + K  L S F+++DLG     LG++I ++   +++CQ 
Sbjct: 279 CVLV--YVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQR 338

Query: 66  HYVEKILKKFDSFDVSPVRTPFDASKHLKKNK-GDNVSQPEYAKIIGSVMYLMNYTRPDI 125
            Y   +L +       P   P D S     +  GD V    Y ++IG +MYL   TR DI
Sbjct: 339 KYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL-QITRLDI 398

Query: 126 AYAVSRLSRYTHNSDRYHWDALRHLLRYLKGTIDYCLHFN 165
           ++AV++LS+++      H  A+  +L Y+KGT+   L ++
Sbjct: 399 SFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 435

The following BLAST results are available for this feature:

BLAST of Cmc05g0129181 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	4.2e-89	94.80	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049695.1	1.0e-74	93.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036644.1	7.7e-67	94.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0049794.1	3.8e-66	92.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK22837.1	5.0e-66	93.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0129181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-29	42.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.6e-22	37.20	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.5e-22	37.20	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-21	37.74	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	3.3e-20	35.67	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0129181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	2.0e-89	94.80	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U7W6	4.9e-75	93.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZD1	3.7e-67	94.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U3G0	1.9e-66	92.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DGL6	2.4e-66	93.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc05g0129181 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.3e-21	35.67	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	2.7e-17	32.50	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..87 e-value: 5.3E-19 score: 68.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 8..160
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0129181.1	Cmc05g0129181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding