Cmc04g0107221.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0107221.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 25699250 .. 25699594 (-)
Sequence length	345
RNA-Seq Expression	Cmc04g0107221.1
Synteny	Cmc04g0107221.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGAGATGGAGTCTTTACATGTAAACCACACTTTTAAGCTTAAGTTGCTCAAAGGAAAAACTGCACTGAAAAATAAATGCGTTTACAGAATTAAACATGAAGAACATACCTCAAAGCCACGTTACAAAGCGAGATTTGTTGTTAAAGGGTTCAGTCAGAAGAAAGGTATCGGTTTTGATGAAAATTTTGCTCCTATTGTCAAGATGTCCTCCATACGTGTCGGTTTGGGTTTGGCAGCTAATCTTGGCTTAGAGGTTGAGCAAATGGATGTTAAGACTGCATTTCTTCATAGGAATTTAGATAAAGAAATCTATATGGAACAACCAAAGGGTTTTTAA

mRNA sequence

ATGAAAGATGAGATGGAGTCTTTACATGTAAACCACACTTTTAAGCTTAAGTTGCTCAAAGGAAAAACTGCACTGAAAAATAAATGCGTTTACAGAATTAAACATGAAGAACATACCTCAAAGCCACGTTACAAAGCGAGATTTGTTGTTAAAGGGTTCAGTCAGAAGAAAGGTATCGGTTTTGATGAAAATTTTGCTCCTATTGTCAAGATGTCCTCCATACGTGTCGGTTTGGGTTTGGCAGCTAATCTTGGCTTAGAGGTTGAGCAAATGGATGTTAAGACTGCATTTCTTCATAGGAATTTAGATAAAGAAATCTATATGGAACAACCAAAGGGTTTTTAA

Coding sequence (CDS)

ATGAAAGATGAGATGGAGTCTTTACATGTAAACCACACTTTTAAGCTTAAGTTGCTCAAAGGAAAAACTGCACTGAAAAATAAATGCGTTTACAGAATTAAACATGAAGAACATACCTCAAAGCCACGTTACAAAGCGAGATTTGTTGTTAAAGGGTTCAGTCAGAAGAAAGGTATCGGTTTTGATGAAAATTTTGCTCCTATTGTCAAGATGTCCTCCATACGTGTCGGTTTGGGTTTGGCAGCTAATCTTGGCTTAGAGGTTGAGCAAATGGATGTTAAGACTGCATTTCTTCATAGGAATTTAGATAAAGAAATCTATATGGAACAACCAAAGGGTTTTTAA

Protein sequence

MKDEMESLHVNHTFKLKLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGIGFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF

Homology

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BLAST of Cmc04g0107221.1 vs. NCBI nr
Match: KAA0065507.1 (putative retrotransposon [Cucumis melo var. makuwa] >TYK08747.1 putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 7.6e-55
Identity = 113/115 (98.26%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           MKDEMESLHVNHTFKL KLLKGKTALKNKCVYRIKHEEHTSKPRYK RFVVKGFSQKKGI
Sbjct: 1   MKDEMESLHVNHTFKLIKLLKGKTALKNKCVYRIKHEEHTSKPRYKVRFVVKGFSQKKGI 60

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
           GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF
Sbjct: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115

[Close]

BLAST of Cmc04g0107221.1 vs. NCBI nr
Match: KAA0040427.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           MKDEM+SLH NHTF+L KL KGKTAL+NK VYRIK EEHTSKPRYKAR VVKGF+QKK I
Sbjct: 660 MKDEMKSLHANHTFELVKLSKGKTALRNKWVYRIKQEEHTSKPRYKARLVVKGFNQKKDI 719

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE FAP+VKMSSIRV LGLAA+L LEVEQMDVKTAFLH +LDKEIYMEQP  F
Sbjct: 720 DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLDKEIYMEQPVDF 774

[Close]

BLAST of Cmc04g0107221.1 vs. NCBI nr
Match: TYJ98688.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           MKDEM+SLH NHTF+L KL KGKTAL+NK VYRIK EEHTSKPRYKAR VVKGF+QKK I
Sbjct: 660 MKDEMKSLHANHTFELVKLSKGKTALRNKWVYRIKQEEHTSKPRYKARLVVKGFNQKKDI 719

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE FAP+VKMSSIRV LGLAA+L LEVEQMDVKTAFLH +LDKEIYMEQP  F
Sbjct: 720 DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLDKEIYMEQPVDF 774

[Close]

BLAST of Cmc04g0107221.1 vs. NCBI nr
Match: CAN77602.1 (hypothetical protein VITISV_024474 [Vitis vinifera])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 90/115 (78.26%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           M+DEMESLH NH+F+L KL KGK ALKN+ VYR+K EEHTS+PRYKAR VVKGF+QKKGI
Sbjct: 729 MQDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 788

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE F P+VKMSSIRV LGLAA+L LE++QMDVKTAFLH NLDKEIYMEQP+GF
Sbjct: 789 DFDEIFFPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGNLDKEIYMEQPEGF 843

[Close]

BLAST of Cmc04g0107221.1 vs. NCBI nr
Match: RVW85908.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           M+DEMESLH NH+F+L KL KGK ALKN+ VYR+K EEHTS+PRYKAR VVKGF+QKKGI
Sbjct: 826 MQDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 885

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE F+P+VKMSSIRV LGLAA+L LE++QMDVKTAFLH +LDKEIYMEQP+GF
Sbjct: 886 DFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPEGF 940

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-31
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           M++EMESL  N T+KL +L KGK  LK K V+++K +      RYKAR VVKGF QKKGI
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE F+P+VKM+SIR  L LAA+L LEVEQ+DVKTAFLH +L++EIYMEQP+GF
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 46/111 (41.44%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 4    EMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGIGFD 63
            E+ +  +N+T+ + K  + K  + ++ V+ +K+ E  +  RYKAR V +GF+QK  I ++
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   ENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKG 114
            E FAP+ ++SS R  L L     L+V QMDVKTAFL+  L +EIYM  P+G
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG 1023

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-14
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 1    MKDEMESLHVNHTFKL--KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKG 60
            M  E+ +   NHT+ L        T +  + ++  K     S  RYKAR V KG++Q+ G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   IGFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            + + E F+P++K +SIR+ LG+A +    + Q+DV  AFL   L  E+YM QP GF
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1    MKDEMESLHVNHTFKL--KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKG 60
            M  E+ +   NHT+ L        T +  + ++  K+    S  RYKAR V KG++Q+ G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   IGFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            + + E F+P++K +SIR+ LG+A +    + Q+DV  AFL   L  ++YM QP GF
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy TrEMBL
Match: A0A5D3C9T7 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00580 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.7e-55
Identity = 113/115 (98.26%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           MKDEMESLHVNHTFKL KLLKGKTALKNKCVYRIKHEEHTSKPRYK RFVVKGFSQKKGI
Sbjct: 1   MKDEMESLHVNHTFKLIKLLKGKTALKNKCVYRIKHEEHTSKPRYKVRFVVKGFSQKKGI 60

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
           GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF
Sbjct: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy TrEMBL
Match: A0A5D3BKF7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00180 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           MKDEM+SLH NHTF+L KL KGKTAL+NK VYRIK EEHTSKPRYKAR VVKGF+QKK I
Sbjct: 660 MKDEMKSLHANHTFELVKLSKGKTALRNKWVYRIKQEEHTSKPRYKARLVVKGFNQKKDI 719

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE FAP+VKMSSIRV LGLAA+L LEVEQMDVKTAFLH +LDKEIYMEQP  F
Sbjct: 720 DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLDKEIYMEQPVDF 774

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy TrEMBL
Match: A0A5A7TFU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00580 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           MKDEM+SLH NHTF+L KL KGKTAL+NK VYRIK EEHTSKPRYKAR VVKGF+QKK I
Sbjct: 660 MKDEMKSLHANHTFELVKLSKGKTALRNKWVYRIKQEEHTSKPRYKARLVVKGFNQKKDI 719

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE FAP+VKMSSIRV LGLAA+L LEVEQMDVKTAFLH +LDKEIYMEQP  F
Sbjct: 720 DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLDKEIYMEQPVDF 774

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy TrEMBL
Match: A5C540 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_024474 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.2e-41
Identity = 90/115 (78.26%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           M+DEMESLH NH+F+L KL KGK ALKN+ VYR+K EEHTS+PRYKAR VVKGF+QKKGI
Sbjct: 729 MQDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 788

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE F P+VKMSSIRV LGLAA+L LE++QMDVKTAFLH NLDKEIYMEQP+GF
Sbjct: 789 DFDEIFFPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGNLDKEIYMEQPEGF 843

[Close]

BLAST of Cmc04g0107221.1 vs. ExPASy TrEMBL
Match: A0A438HN89 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3233 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.8e-41
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           M+DEMESLH NH+F+L KL KGK ALKN+ VYR+K EEHTS+PRYKAR VVKGF+QKKGI
Sbjct: 826 MQDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 885

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            FDE F+P+VKMSSIRV LGLAA+L LE++QMDVKTAFLH +LDKEIYMEQP+GF
Sbjct: 886 DFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPEGF 940

[Close]

BLAST of Cmc04g0107221.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-18
Identity = 44/115 (38.26%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 1   MKDEMESLHVNHTFKL-KLLKGKTALKNKCVYRIKHEEHTSKPRYKARFVVKGFSQKKGI 60
           M DE+ ++   HT+++  L   K  +  K VY+IK+    +  RYKAR V KG++Q++GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  GFDENFAPIVKMSSIRVGLGLAANLGLEVEQMDVKTAFLHRNLDKEIYMEQPKGF 115
            F E F+P+ K++S+++ L ++A     + Q+D+  AFL+ +LD+EIYM+ P G+
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

The following BLAST results are available for this feature:

BLAST of Cmc04g0107221.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065507.1	7.6e-55	98.26	putative retrotransposon [Cucumis melo var. makuwa] >TYK08747.1 putative retrotr...	[more]
KAA0040427.1	2.2e-41	81.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ98688.1	2.2e-41	81.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
CAN77602.1	1.1e-40	78.26	hypothetical protein VITISV_024474 [Vitis vinifera]	[more]
RVW85908.1	1.8e-40	77.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc04g0107221.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.7e-31	63.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-16	41.44	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.9e-14	37.07	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-13	36.21	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc04g0107221.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9T7	3.7e-55	98.26	Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BKF7	1.0e-41	81.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TFU1	1.0e-41	81.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A5C540	5.2e-41	78.26	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438HN89	8.8e-41	77.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc04g0107221.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-18	38.26	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 14..114 e-value: 2.1E-26 score: 93.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0107221	Cmc04g0107221	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107221.1-exon	Cmc04g0107221.1-exon-CMiso1.1chr04:25699250..25699594	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107221.1-cds	Cmc04g0107221.1-cds-CMiso1.1chr04:25699250..25699594	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107221.1	Cmc04g0107221.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding