CmaCh20G008500.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G008500.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein RADIALIS-like 2
Location	Cma_Chr20: 4067706 .. 4069472 (-)
Sequence length	676
RNA-Seq Expression	CmaCh20G008500.1
Synteny	CmaCh20G008500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCTCTCCGCCCCCACTTCTCTCTCTCTCCCATTCCCTTATATCTCTCCCCCTTTCTCTCTTCCACACCTTACTATCCATAATGGCTTCCATGTCCTCCTCTCACCACTCTTCCTCTTGGACTCCCAAGGAAAACAAAGCCTTTGAGAGAGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCTCAATGTCGCCAAGGCCGTCGGCGGGGGCAAAACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAGGATGTCAAACACATTGAATTTGGCCACGTACCATTCCCTAATTATTCCTCTACTGCTTCTGCCACCGGAACGTCCAATGCCAACATCAATGATCAAGAACAAAGGTATCTCTTCAAAACATACTCTTAACTACTCAACTATGTTATATGTATCCGTACAAATTTTTCTTTACTAGAAAATTTCAATTTCTAAGTTGCTATCAACTTATTTTTTGGTTTACTTTTGAGATTTTCCACATCTATTTCAATTATTTTGATATTTTTCATTTTGACAATTTTTTTCATAACTTAGCGTTCTTGAGGAACTCTTACTTTCTTATTTTTCCTTTTTTCTTTAAGTAAAAATATAATGTAATTAATTAAAAAAAAAGTCTATAAAGTTTATTTATTAGACATTTTAATCATATTTTTATAAGGAAAAATAGGGAAATTTGAAATTAAAATTTGCATTTTGAGGGAATTGGGTTTCCATAGAAAAAGAAAAGCATGCAAACCAATCATCACTCAATTGGTAAATGCAATGGTTCAGATTTTATGAATTTTAAATTTAAAAGTCACAACAATTTACGAGAGGCCCATAGTGAGCCACTCACGTGCCACTCACGTGCCTTCTCCACCACTAATTATTACCAATAATTGCGTTGTTAATATTATAATCTCTTAATTGGATTATCTAATCTTATACTAATTTATTGTTTAATGTTTTTTTTTTTTTTTTTACTACAAATATCAAAACGAGCCCATTACTCGAGAACTAGGGAGTTGTTTTAAAATATTATAAATAAATAAGTAAATCTCAATAATATTTTATTTCAATTTAATTGACCAATTTTCCCAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAATCTAAAGTTTTTCAAAAATCACTATGAAATTTAAATTATGTTTTTGGAAATTGCAATAAAGGGGTTAACTTATTTAGTAATTGCAGGATGAGAAACCTGAAGCTTCAATAAATAGGCTGAAAATGCAAGCAACTGGGAGGGATGAGAGGAAGAATAAAGGTGGATGGTGGTTGCTGTTTTTGCCCCTAAGATGACTAATCTATCAAATTGCAGGAATCCATCAGTGTAAACCTGCAATTCTATGTTTTTTTTAGTGTATTTTTCCAACCAAAAATGCTAATCAATGTAGGAGAATGAGTTTACTTTACGTTCTTTTCAAGCTAACAAGGTCGTGTCGAAAACATGGTTTAATAGATAGGATACCTGGTATGTGAGATCCACGTCAACTAAGC

mRNA sequence

CTATCTCTCCGCCCCCACTTCTCTCTCTCTCCCATTCCCTTATATCTCTCCCCCTTTCTCTCTTCCACACCTTACTATCCATAATGGCTTCCATGTCCTCCTCTCACCACTCTTCCTCTTGGACTCCCAAGGAAAACAAAGCCTTTGAGAGAGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCTCAATGTCGCCAAGGCCGTCGGCGGGGGCAAAACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAGGATGTCAAACACATTGAATTTGGCCACGTACCATTCCCTAATTATTCCTCTACTGCTTCTGCCACCGGAACGTCCAATGCCAACATCAATGATCAAGAACAAAGGATGAGAAACCTGAAGCTTCAATAAATAGGCTGAAAATGCAAGCAACTGGGAGGGATGAGAGGAAGAATAAAGGTGGATGGTGGTTGCTGTTTTTGCCCCTAAGATGACTAATCTATCAAATTGCAGGAATCCATCAGTGTAAACCTGCAATTCTATGTTTTTTTTAGTGTATTTTTCCAACCAAAAATGCTAATCAATGTAGGAGAATGAGTTTACTTTACGTTCTTTTCAAGCTAACAAGGTCGTGTCGAAAACATGGTTTAATAGATAGGATACCTGGTATGTGAGATCCACGTCAACTAAGC

Coding sequence (CDS)

ATGGCTTCCATGTCCTCCTCTCACCACTCTTCCTCTTGGACTCCCAAGGAAAACAAAGCCTTTGAGAGAGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCTCAATGTCGCCAAGGCCGTCGGCGGGGGCAAAACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAGGATGTCAAACACATTGAATTTGGCCACGTACCATTCCCTAATTATTCCTCTACTGCTTCTGCCACCGGAACGTCCAATGCCAACATCAATGATCAAGAACAAAGGATGAGAAACCTGAAGCTTCAATAA

Protein sequence

MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ

Homology

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-27
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MASMS-SSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
           MAS S SS+ S SWT K+NKAFERALAV+D+DTPDRW NVA+AV GGKTP+E K  +DLL
Sbjct: 1   MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLL 60

Query: 61  VEDVKHIEFGHVPFPNYSSTASATGTSN-ANINDQEQRMRNLKLQ 104
           V D++ IE GHVPFP+Y +T   TG SN   + D+E+RMR++KLQ
Sbjct: 61  VRDIESIENGHVPFPDYKTT---TGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-26
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MASMS-SSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
           MAS S SS  S SWT K+NKAFE+ALA +D+DTP+RW NVAK V GGKT +EVK H++LL
Sbjct: 1   MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELL 60

Query: 61  VEDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           V+D+  IE GHVPFPNY ++    G +N  ++ +E+RMRN++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSG---GCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-25
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 13  WTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIEFGHVP 72
           W+ KENKAFERALAV+DKDTPDRW NVA+AV  G+TP+EVK H+++LVED+K+IE G VP
Sbjct: 11  WSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVP 70

Query: 73  FPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           FPNY        T+  N+   E+R RNLK++
Sbjct: 71  FPNYR-------TTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MAS S S   S WT  +NK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LV
Sbjct: 1   MASNSRS-SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR-MRNLKL 103
           ED+ +IE G VP PNY +  S    ++ +IND + R M+NLK+
Sbjct: 61  EDLINIETGRVPLPNYKTFES----NSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-21
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MAS SS   SSSWT K+NK FERALAV+DKDTPDRW NVAKAV G K+ +EVK H+D+LV
Sbjct: 1   MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR-MRNLKLQ 104
           ED+ +IE   VP P Y +     G+ +  I+D + R M+N+++Q
Sbjct: 61  EDLMNIEQDLVPLPKYKTV--DVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.2e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ
Sbjct: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 103

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 8.8e-48
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MASM+SSH SSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1   MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           EDVKHIE GHVPFPNYSSTASA+GTSNANINDQEQRMR+LKLQ
Sbjct: 61  EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRMRDLKLQ 103

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.7e-38
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MAS+SSS  SSSWTP +NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LV
Sbjct: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKL 103
           EDVKHIE G VPFP Y+S++S+  TSNANI DQEQRMRN+KL
Sbjct: 61  EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 100

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MASMSSSHH---SSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60
           MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  LLVEDVKHIEFGHVPFPNYSSTASATG----TSNANINDQEQRMRNLKL 103
            LVEDVKHIE G VPFP Y+S++S++     +SNANI DQEQRMRN+KL
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL 109

[Close]

BLAST of CmaCh20G008500.1 vs. ExPASy TrEMBL
Match: A0A6J1CYR5 (protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MA+MSS   S SWTP +NKAFERALAVFDKDTPDRW NVA AV GGKT DEVK HFDLLV
Sbjct: 1   MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKL 103
           EDVKHIE G +PFPNY  TA+ TG+SN N+ND+E+RMRNLKL
Sbjct: 61  EDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKRMRNLKL 99

[Close]

BLAST of CmaCh20G008500.1 vs. NCBI nr
Match: XP_022986646.1 (protein RADIALIS-like 2 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 4.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ
Sbjct: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 103

[Close]

BLAST of CmaCh20G008500.1 vs. NCBI nr
Match: KAG6571117.1 (Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MASMSSSHHSSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1   MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           EDVKHIE GHVPFPNYSSTAS +GTSNANINDQEQRMRNLKLQ
Sbjct: 61  EDVKHIESGHVPFPNYSSTASDSGTSNANINDQEQRMRNLKLQ 103

[Close]

BLAST of CmaCh20G008500.1 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MASMSSSHHSSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1   MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           EDVKHIE GHVPFPNYSSTASA+ TSNAN++DQEQRMRNLKLQ
Sbjct: 61  EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQRMRNLKLQ 103

[Close]

BLAST of CmaCh20G008500.1 vs. NCBI nr
Match: XP_022944318.1 (protein RADIALIS-like 2 [Cucurbita moschata])

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-47
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MASM+SSH SSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1   MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           EDVKHIE GHVPFPNYSSTASA+GTSNANINDQEQRMR+LKLQ
Sbjct: 61  EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRMRDLKLQ 103

[Close]

BLAST of CmaCh20G008500.1 vs. NCBI nr
Match: KAG6571113.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASMSSSHHSSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR 97
          EDVKHIE GHVPFPNYSSTAS +GTSNANINDQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASDSGTSNANINDQEQR 96

[Close]

BLAST of CmaCh20G008500.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-28
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MASMS-SSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
           MAS S SS+ S SWT K+NKAFERALAV+D+DTPDRW NVA+AV GGKTP+E K  +DLL
Sbjct: 1   MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLL 60

Query: 61  VEDVKHIEFGHVPFPNYSSTASATGTSN-ANINDQEQRMRNLKLQ 104
           V D++ IE GHVPFP+Y +T   TG SN   + D+E+RMR++KLQ
Sbjct: 61  VRDIESIENGHVPFPDYKTT---TGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of CmaCh20G008500.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-27
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MASMS-SSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
           MAS S SS  S SWT K+NKAFE+ALA +D+DTP+RW NVAK V GGKT +EVK H++LL
Sbjct: 1   MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELL 60

Query: 61  VEDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKLQ 104
           V+D+  IE GHVPFPNY ++    G +N  ++ +E+RMRN++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSG---GCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmaCh20G008500.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-23
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MAS S S   S WT  +NK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LV
Sbjct: 1   MASNSRS-SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR-MRNLKL 103
           ED+ +IE G VP PNY +  S    ++ +IND + R M+NLK+
Sbjct: 61  EDLINIETGRVPLPNYKTFES----NSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CmaCh20G008500.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-22
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
           MAS SS   SSSWT K+NK FERALAV+DKDTPDRW NVAKAV G K+ +EVK H+D+LV
Sbjct: 1   MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILV 60

Query: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR-MRNLKLQ 104
           ED+ +IE   VP P Y +     G+ +  I+D + R M+N+++Q
Sbjct: 61  EDLMNIEQDLVPLPKYKTV--DVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmaCh20G008500.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-21
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS S S   S WT  +NK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LV
Sbjct: 1  MASNSRS-SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILV 60

Query: 61 EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR 97
          ED+ +IE G VP PNY +  S    ++ +IND + R
Sbjct: 61 EDLINIETGRVPLPNYKTFES----NSRSINDFDTR 90

The following BLAST results are available for this feature:

BLAST of CmaCh20G008500.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	1.7e-27	63.81	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	1.8e-26	58.65	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	7.7e-25	60.44	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	1.4e-21	59.22	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	6.8e-21	55.77	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of CmaCh20G008500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBS7	2.2e-51	100.00	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A6J1FXX9	8.8e-48	94.17	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A0A0LL58	3.7e-38	82.35	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A1S3CDK8	2.0e-36	76.15	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A6J1CYR5	2.5e-34	76.47	protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1	[more]

BLAST of CmaCh20G008500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986646.1	4.6e-51	100.00	protein RADIALIS-like 2 [Cucurbita maxima]	[more]
KAG6571117.1	1.3e-48	96.12	Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023513343.1	1.1e-47	94.17	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022944318.1	1.8e-47	94.17	protein RADIALIS-like 2 [Cucurbita moschata]	[more]
KAG6571113.1	8.4e-45	95.83	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh20G008500.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	1.2e-28	63.81	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.3e-27	58.65	RAD-like 1	[more]
AT1G75250.2	9.7e-23	59.22	RAD-like 6	[more]
AT1G19510.1	4.8e-22	55.77	RAD-like 5	[more]
AT1G75250.1	1.8e-21	59.38	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..62 e-value: 3.0E-6 score: 36.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..60 score: 6.423065
None	No IPR available	GENE3D	1.10.10.60		coord: 3..73 e-value: 1.4E-21 score: 78.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..103
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..102
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..102
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh20G008500	CmaCh20G008500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G008500.1:exon:566	CmaCh20G008500.1:exon:566	exon
CmaCh20G008500.1:exon:565	CmaCh20G008500.1:exon:565	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G008500.1:three_prime_utr	CmaCh20G008500.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G008500.1:cds	CmaCh20G008500.1:cds_2	CDS
CmaCh20G008500.1:cds	CmaCh20G008500.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G008500.1:five_prime_utr	CmaCh20G008500.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh20G008500.1	CmaCh20G008500.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding