CmaCh18G006230.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G006230.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S12, chloroplastic
Location	Cma_Chr18: 5509573 .. 5515225 (-)
Sequence length	414
RNA-Seq Expression	CmaCh18G006230.1
Synteny	CmaCh18G006230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACCAGAACATTACGCTTTTTGAATTACCTTAATCAAAACTAAAATGGATGAGTTATAGCGGAAACAAAATAGAGTAAAAAGTACTCTGATCTTATCACATGACAGTTGAGTTGGGATCATGGACCAATGAAAAGGTGACATGTGTACTTACATTTTTAATTGTTTTTTGAAATAAAACAATATATATAATAAAAGGAATAAATCTAAAACTTAATGACCTTTAATTATTATTTTAAAAATAAATGGAAAAAAATTTAAATTTGTTCATCATTACTACTATTATTACTATTATTATTAAAAAAGAAAAGAAACTCAAATTTATGATATGGTCATTGATATCATTATTGTATTATTATTTTAAATTAAAATAAAATAAGAAAAACTTTCTAAATTTGTTCATAATTTTTCTATTTAAATATATATATAATCTTCTCCATACTCAATACACAATTTTTCTACCATTCTTTCCTCCTTATCTTTTTTTAAACTTCCAATTTTTTTTTCTCGTTATCTTAATTTTTAGAAAGTTTTTTATTGTAGGGTAAGAATATTGTCGTGAGTATTCAAATTGTAAATGTCACACTCCGAATTTGAGCGCCAAAATACTTGAAGTGTATGTGTATGGTGTACATTTAAAATGGGGTATGGAGCAGGGATACACGGTGTAAAAAGAAAGGTGAATTGTGAACTCATGGACTCTACAAACGCCCCAGGCCGAGGACACTAAGTTCCTAGGCACCCCCTCACCTTGACCAACATACTCATGGATTTGAAAAGGGAAAGTAGAATGGAGCAAATAAGCTACTTGTAGGATCTCATCGCATCCTTGATCTATAGATGACCAAGGTTAATCCTAGGCCTTAGGCTTGTTGACCTTGTGCACAGACTTTGTATCACATTAGGCTTCGCAACGATACCAAGTGCTTGTAGTTGAGATGCTACCTCAAATACACTCTCACAAATCAGGTGGAGACAACCGGGTGAGTCCTAACCTCAAGTACACTCTCCCAAATATCACCCAAATCGAGAAATCGAGAAGCCATTATAAGAAAATCAAATTCCTTAAAAGTGATAGGTGAGAAGAAAAGGCACCCAATGGGCCTTCATTGTTAGGGCAATTCTATGGAAGATTTGTATCTTTGTTTGGTGTTCCTTTGAGAAGAAGGGAAGAAAGGGAATATCTCACCTATATTTGAGTTTTGTACTAAGTTTCCATGTTAGCTTCTTCTTCACATACTAAGTGTTGACATGTCATCTAATTACACAAGTTTACTTCCTATTGGATGACACAACAATTAAGTAATATTTAAGGGTGCATAGGTCCAAACAATCCGAACAAAGGTCATAGTTCAACCCAAACCTTCTGTTTTTGGGTTAGATTAAGTGGTTTTTGTTTAATTATTTTACAAAGTCATGTTTATCCCCTGAGTTACAAATATTCACCAGCCACACTGTATATAGTTAACATTAGTTACAAGCGTGAAATATTCTTAGTTTTCATAATAATCTTAAAAGTAGAGTAGGATTGAGTTGAATTGTAACCTTATTTTTTGGTGGGTTAGATTGTGTCACGTCCTAAGCCCACTGCTAACAAATATTGTTGTCTTTGGACTTTCCCTCTCAAGTTTTCCCTCAACTCTTTTAAAGAATGCTTTGTGCCCATTTCAACCTGATGTGGGATTTCACAATAAATTTGAGAGGAAACATGAAAGAGAAAGCCAAAAGAAACAATATGTACTAGTAGTGGATTGAGATTTTCCAAGTTGACCCATAAGCTGATTTAAATTTTAAGTAATCGGAAAAAGAAAAAAAAAAAATCTAACCCAACCTATATGATTTGAGTTGGGTAGCTCAGGTTAGATGACTTATTGGGTCATATAAACACCCTCGAAAGCTGCTTGTGACCTCAAACAAAAACTTTATTTTTCGTTTGTTTTTGGTAATTAGGAAGTGAATGATCATATTGCAATCCCCTTTTATGGTATATATCCGAATGGCATAGTGTGTTCGAAGCACATGTGATATGGGGTTTAAGTGATCCAAATGGGATGCGTTGTCCCATCGACGAGGGGCCATTGGGGCCTCCTTGCCTTCCCCTTCCCCAACACAGCTACCAAATGCAACCTTCATTTCACACTCCCAACGAACATTAAGGCATTTAGGAGAGGCACAAATAAATATGCCCACTTGCCTCTTTCCTTTATTCATTTGGACCACCACCAAATTATGTATCTCATCCATCCTTCTCACCTACATTTTTACGCATTTAATTCTACCATCTTATCTCTATCCACTTGTTTGTGTAGCAACTCGACTTTTTAAAACCCTAAACTACTCTAGGTTCGTGTCATTTTAAAGCGGAAGAATAAAAACATGTAGGTTGCAAACGCGTACGTTTCGAAAAATAACTAAGTTTTGTACAAGGTACCCGTTTCTAATCAAATCTAAAAGACCATACATCCAAGTTATTTAAAAACATAGAACTCTATATATAAACAATATGACAGTCTCTCAGGGTAACTACCGATCCCTCTCAGCTCTTACACGCACTTGCTCTTACCTAAAAAAAAATTCAACTCCCATGCACACCCATGCACATCGATGAGCTACTGCCACTAGTAAAGATCTCAAGGGAGTGCAATGGTCGGAGATATTCTTTATGAAACTTCCTATTTTTAAATAAAATTGGATGTATTATTTTCTCGTTTGATTTTAAAATGGTAATCCATGTAAAACGTAGTTATTTCTTAAAATGTATTTACGACGTGTACGTTTTCATTCTTTTACTTTAAAGTGGTGTCAACATGCGTATGATAACGAACTCGAGTCGATCTAGGATTATAGAAAATCTAGTTCTTAAGTCAAGTAGGTATTGTATTATAATGTATATATGTTAATCCCACCGAACTTGTGCGTAAGGTATTTTGATTATATTTTTGTATTATCCATCTAATATGTATATCATTATTGTCTACATCTTTTATACATTTGACCAACTCATATAACCCGTATGTGTTGTTAAAGTGTTAGCCAACCCTCTATTTTTTGACTTGAGTTGGATGGAGCATCGATTAAAAAGAAAGATTTAGAGTAGTTAATCTCATTGATTGGTAAAGCGTTTGACTAAGAATGAGAGTGGGAGCAACGTGCGACAGCAAATGGCGAGCAACATGCGAATGAACATGATCAAGAGAGGTGTAGCGTGGTGTGTGATTGCTGCAAGCCAAGTAACTTACGACTACAAATGGGACAAGTACAAAAATCGAATAGAACTAGTTCGGTTCTCAAAAGGGGAAAATATATCAAACCTAAACCAATATTATATGTAAATGAACTCAACCCAACGCGGGGAGATTTAGGAATTTTATTTATAAATTAATAATTTTTATTTATATACTTTTGAAAGATTTATTTATTCCTTTAAGTTTGATTAGATATTTTGTGTTTGCATTAGAAGAAATAGGATAATTAAATTTTTTAAAGATAAAAATTATTTTAAAATTCCGGTTGTCCTACCAAGCGTGTGCAATTTTGAATATAACTATTTATACCAATTTTTTTTTATTAAGTAATTTATAAAAAAAGAAAAAAAAAAGGAAAAAATACAACTATTTAATATTACGAGATTTCGTAATTTATATCCTTTTAATTTCCAGAAATGGATTGCAAACAAATGGATAACCGTCAAAATATAAAATACAAAATATCTGCATATTTCTATTATTTAAATTAATGTACAAAATTACAAATTCATCTTTTTTTTTTTTTTTTTTTTTAAATCAAATTAGTCATAATAAAATTTTGAAGTTTGAAAAATGTTAAAAAGACTAATTTTTGGAGTTGTTTGTAAGAATATTTGAAATATTTACGTACGATATGAAAATAATAATAAATGGATATAAGATATTTATGCAAATATTTAGATATTTATTTATAATAAAATATCAAATAAGAGGTGTGGTCAATTATAATTCAGGACTATAATTTAGAACTAAATATCTGTATTTGTATAGTTTAAAAATATAGTTTTTTTTTAAAAAAAATTAAATAACAAAATTAAGCTAAAATTTTTTTATGGGAATTTTTTTTAAAAAAAATTGTGTTAAATAGGTTGTATTTCAAAATTTTAAAAATTTAAGATCCTATTAAACTCAAAATTGAAAGTGCTTATACCATGATAGACAAAAAATTCAATAATTTTTTAATTTTTTTTAAATATTAAATATGCTAAACATCTAATCAATACTTTTAAAAATAATATATATATATATATATTTATAGTTTAGTATCACATTAAATAAAAAATTTAAAGGATATTTTTTTTGAAGGTTGACATCAAAAAGAAAAAAAAAATGGAAGGATTAAAGTTAGAATTGAATGGAAATTAGAGGAAAGGAAGTAAAAAGAAATTGGAGTTAAAAAGAATGGATAAGAAAGGTAAAAAGGGTCTGTTTTGTGAAGTAAGGGAATTGGATAAGTGAAGTTTATAGGCCCCATAATATCTTTATGCATAAACTGGATTCAAAGAAATAGAAAAAGGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGGGAAGCTTTTTAATAAAGGGAGAGAAATGAAGGGTTTGGTTAATAATGATTTCACTCACAGAAATGGAGGGTTTTGGTTTGGAGGCATGACAGACAGCTGCTGCACATCAGTCGTTTGGTGATTCGGACCCCTTTAGTTCCTGGACAAAATACCGACGCTAAATTATTGCCTTTCTCAAAAACCCCTCTCCTTTGTGTACCTCCCACCCCTCTTTCTCTCTCCTCACCTCTCTCCATTGTCAAGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGTATTCTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGTTTTTGCATCTGGGGTTGCGTTTTTCTCTTGGATCTGTTCTGGGGTTTCACTGATTAAGCTTCAGGTTTTGGTTTCAAGATCTGGGGTTTCTTTTCTCTTTCCTCCTACCCTTTTTTGAAGCGGTTTTAGGTTCTGAGTTGATTCTAGTTTGTTGGCTAGGGTTCGTGATGACTTCTGTACTGTTACTGAGTGTTTGAATCTGTCTGAATCCTTGGTTTCTTGTTTTGTTTGTCTGTTTTCATGTTTTTTCTTCACTTCTTCAATGTCTTGTCTGCGATATCTGCTTTCTGCTTTGTCTCTGACTGAATATTCATCTTGATTTTTGCTTTGCTAAATCCTTGGATGACATGTTCTTAGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGLQLCTKTNQALYHDPLQFGTSFSGWKTKRQTGELLIVCAEAAD

Homology

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BLAST of CmaCh18G006230.1 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 46 SCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          +CT + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 33 TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 82

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 55 KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 31 RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 71

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy Swiss-Prot
Match: A4GYT5 (30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 95

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.2e-37
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 173

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy TrEMBL
Match: A0A443Q5G0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02772100 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 98

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 98

[Close]

BLAST of CmaCh18G006230.1 vs. ExPASy TrEMBL
Match: A0A6P6GKJ1 (uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC112488768 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDLS+
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDLSI 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFS I PKKPNSAL KVARVRLT GFE+T +IPG+
Sbjct: 61 NFSIIIPKKPNSALSKVARVRLTFGFEMTTFIPGI 95

[Close]

BLAST of CmaCh18G006230.1 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-43
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 95

[Close]

BLAST of CmaCh18G006230.1 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 9.8e-41
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLS+
Sbjct: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 95

[Close]

BLAST of CmaCh18G006230.1 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1  MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPK  NSALRKVARVRLTSGFEI AYIPG+
Sbjct: 61 NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGI 95

[Close]

BLAST of CmaCh18G006230.1 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 164.1 bits (414), Expect = 8.6e-37
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 173

[Close]

BLAST of CmaCh18G006230.1 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 98

[Close]

BLAST of CmaCh18G006230.1 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]

BLAST of CmaCh18G006230.1 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]

BLAST of CmaCh18G006230.1 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]

BLAST of CmaCh18G006230.1 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 63 STITPKKPNSALRKVARVRLTSGFEITAYIPG 95
          ST TPKKPNSA RK+A+VRL++  +I A+IPG
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPG 69

[Close]

BLAST of CmaCh18G006230.1 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 63 STITPKKPNSALRKVARVRLTSGFEITAYIPG 95
          ST TPKKPNSA RK+A+VRL++  +I A+IPG
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPG 69

The following BLAST results are available for this feature:

BLAST of CmaCh18G006230.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	7.1e-18	90.00	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	8.4e-11	80.49	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4QJV5	7.1e-10	96.88	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4GYT5	7.1e-10	96.88	30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
Q3V510	7.1e-10	96.88	30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE...	[more]

BLAST of CmaCh18G006230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	1.0e-43	98.95	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6A5N1Q8	4.2e-37	89.36	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5G0	1.2e-36	90.43	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A3S3NSS0	1.2e-36	90.43	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6P6GKJ1	1.4e-32	77.89	uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC11248876...	[more]

BLAST of CmaCh18G006230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	2.1e-43	98.95	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038902483.1	9.8e-41	95.79	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038896566.1	2.4e-39	93.68	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
KAF1876942.1	8.6e-37	89.36	hypothetical protein Lal_00033867 [Lupinus albus]	[more]
RWR98012.1	2.5e-36	90.43	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]

BLAST of CmaCh18G006230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	5.1e-11	96.88	ribosomal protein S12A	[more]
ATCG01230.1	5.1e-11	96.88	ribosomal protein S12B	[more]
ATCG00905.1	5.1e-11	96.88	ribosomal protein S12C	[more]
AT2G07675.1	7.1e-05	65.63	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	7.1e-05	65.63	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 83..102 score: 40.69 coord: 67..82 score: 91.32
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..96 e-value: 4.7E-13 score: 48.8
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 33..99
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 68..75
None	No IPR available	GENE3D	2.40.50.140		coord: 11..106 e-value: 2.6E-16 score: 61.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..36
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 33..99
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G006230	CmaCh18G006230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006230.1:exon:1551	CmaCh18G006230.1:exon:1551	exon
CmaCh18G006230.1:exon:1550	CmaCh18G006230.1:exon:1550	exon
CmaCh18G006230.1:exon:1549	CmaCh18G006230.1:exon:1549	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006230.1:cds	CmaCh18G006230.1:cds_3	CDS
CmaCh18G006230.1:cds	CmaCh18G006230.1:cds_2	CDS
CmaCh18G006230.1:cds	CmaCh18G006230.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006230.1	CmaCh18G006230.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome