CmaCh18G006230 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G006230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S12, chloroplastic
LocationCma_Chr18: 5509573 .. 5515225 (-)
RNA-Seq ExpressionCmaCh18G006230
SyntenyCmaCh18G006230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACCAGAACATTACGCTTTTTGAATTACCTTAATCAAAACTAAAATGGATGAGTTATAGCGGAAACAAAATAGAGTAAAAAGTACTCTGATCTTATCACATGACAGTTGAGTTGGGATCATGGACCAATGAAAAGGTGACATGTGTACTTACATTTTTAATTGTTTTTTGAAATAAAACAATATATATAATAAAAGGAATAAATCTAAAACTTAATGACCTTTAATTATTATTTTAAAAATAAATGGAAAAAAATTTAAATTTGTTCATCATTACTACTATTATTACTATTATTATTAAAAAAGAAAAGAAACTCAAATTTATGATATGGTCATTGATATCATTATTGTATTATTATTTTAAATTAAAATAAAATAAGAAAAACTTTCTAAATTTGTTCATAATTTTTCTATTTAAATATATATATAATCTTCTCCATACTCAATACACAATTTTTCTACCATTCTTTCCTCCTTATCTTTTTTTAAACTTCCAATTTTTTTTTCTCGTTATCTTAATTTTTAGAAAGTTTTTTATTGTAGGGTAAGAATATTGTCGTGAGTATTCAAATTGTAAATGTCACACTCCGAATTTGAGCGCCAAAATACTTGAAGTGTATGTGTATGGTGTACATTTAAAATGGGGTATGGAGCAGGGATACACGGTGTAAAAAGAAAGGTGAATTGTGAACTCATGGACTCTACAAACGCCCCAGGCCGAGGACACTAAGTTCCTAGGCACCCCCTCACCTTGACCAACATACTCATGGATTTGAAAAGGGAAAGTAGAATGGAGCAAATAAGCTACTTGTAGGATCTCATCGCATCCTTGATCTATAGATGACCAAGGTTAATCCTAGGCCTTAGGCTTGTTGACCTTGTGCACAGACTTTGTATCACATTAGGCTTCGCAACGATACCAAGTGCTTGTAGTTGAGATGCTACCTCAAATACACTCTCACAAATCAGGTGGAGACAACCGGGTGAGTCCTAACCTCAAGTACACTCTCCCAAATATCACCCAAATCGAGAAATCGAGAAGCCATTATAAGAAAATCAAATTCCTTAAAAGTGATAGGTGAGAAGAAAAGGCACCCAATGGGCCTTCATTGTTAGGGCAATTCTATGGAAGATTTGTATCTTTGTTTGGTGTTCCTTTGAGAAGAAGGGAAGAAAGGGAATATCTCACCTATATTTGAGTTTTGTACTAAGTTTCCATGTTAGCTTCTTCTTCACATACTAAGTGTTGACATGTCATCTAATTACACAAGTTTACTTCCTATTGGATGACACAACAATTAAGTAATATTTAAGGGTGCATAGGTCCAAACAATCCGAACAAAGGTCATAGTTCAACCCAAACCTTCTGTTTTTGGGTTAGATTAAGTGGTTTTTGTTTAATTATTTTACAAAGTCATGTTTATCCCCTGAGTTACAAATATTCACCAGCCACACTGTATATAGTTAACATTAGTTACAAGCGTGAAATATTCTTAGTTTTCATAATAATCTTAAAAGTAGAGTAGGATTGAGTTGAATTGTAACCTTATTTTTTGGTGGGTTAGATTGTGTCACGTCCTAAGCCCACTGCTAACAAATATTGTTGTCTTTGGACTTTCCCTCTCAAGTTTTCCCTCAACTCTTTTAAAGAATGCTTTGTGCCCATTTCAACCTGATGTGGGATTTCACAATAAATTTGAGAGGAAACATGAAAGAGAAAGCCAAAAGAAACAATATGTACTAGTAGTGGATTGAGATTTTCCAAGTTGACCCATAAGCTGATTTAAATTTTAAGTAATCGGAAAAAGAAAAAAAAAAAATCTAACCCAACCTATATGATTTGAGTTGGGTAGCTCAGGTTAGATGACTTATTGGGTCATATAAACACCCTCGAAAGCTGCTTGTGACCTCAAACAAAAACTTTATTTTTCGTTTGTTTTTGGTAATTAGGAAGTGAATGATCATATTGCAATCCCCTTTTATGGTATATATCCGAATGGCATAGTGTGTTCGAAGCACATGTGATATGGGGTTTAAGTGATCCAAATGGGATGCGTTGTCCCATCGACGAGGGGCCATTGGGGCCTCCTTGCCTTCCCCTTCCCCAACACAGCTACCAAATGCAACCTTCATTTCACACTCCCAACGAACATTAAGGCATTTAGGAGAGGCACAAATAAATATGCCCACTTGCCTCTTTCCTTTATTCATTTGGACCACCACCAAATTATGTATCTCATCCATCCTTCTCACCTACATTTTTACGCATTTAATTCTACCATCTTATCTCTATCCACTTGTTTGTGTAGCAACTCGACTTTTTAAAACCCTAAACTACTCTAGGTTCGTGTCATTTTAAAGCGGAAGAATAAAAACATGTAGGTTGCAAACGCGTACGTTTCGAAAAATAACTAAGTTTTGTACAAGGTACCCGTTTCTAATCAAATCTAAAAGACCATACATCCAAGTTATTTAAAAACATAGAACTCTATATATAAACAATATGACAGTCTCTCAGGGTAACTACCGATCCCTCTCAGCTCTTACACGCACTTGCTCTTACCTAAAAAAAAATTCAACTCCCATGCACACCCATGCACATCGATGAGCTACTGCCACTAGTAAAGATCTCAAGGGAGTGCAATGGTCGGAGATATTCTTTATGAAACTTCCTATTTTTAAATAAAATTGGATGTATTATTTTCTCGTTTGATTTTAAAATGGTAATCCATGTAAAACGTAGTTATTTCTTAAAATGTATTTACGACGTGTACGTTTTCATTCTTTTACTTTAAAGTGGTGTCAACATGCGTATGATAACGAACTCGAGTCGATCTAGGATTATAGAAAATCTAGTTCTTAAGTCAAGTAGGTATTGTATTATAATGTATATATGTTAATCCCACCGAACTTGTGCGTAAGGTATTTTGATTATATTTTTGTATTATCCATCTAATATGTATATCATTATTGTCTACATCTTTTATACATTTGACCAACTCATATAACCCGTATGTGTTGTTAAAGTGTTAGCCAACCCTCTATTTTTTGACTTGAGTTGGATGGAGCATCGATTAAAAAGAAAGATTTAGAGTAGTTAATCTCATTGATTGGTAAAGCGTTTGACTAAGAATGAGAGTGGGAGCAACGTGCGACAGCAAATGGCGAGCAACATGCGAATGAACATGATCAAGAGAGGTGTAGCGTGGTGTGTGATTGCTGCAAGCCAAGTAACTTACGACTACAAATGGGACAAGTACAAAAATCGAATAGAACTAGTTCGGTTCTCAAAAGGGGAAAATATATCAAACCTAAACCAATATTATATGTAAATGAACTCAACCCAACGCGGGGAGATTTAGGAATTTTATTTATAAATTAATAATTTTTATTTATATACTTTTGAAAGATTTATTTATTCCTTTAAGTTTGATTAGATATTTTGTGTTTGCATTAGAAGAAATAGGATAATTAAATTTTTTAAAGATAAAAATTATTTTAAAATTCCGGTTGTCCTACCAAGCGTGTGCAATTTTGAATATAACTATTTATACCAATTTTTTTTTATTAAGTAATTTATAAAAAAAGAAAAAAAAAAGGAAAAAATACAACTATTTAATATTACGAGATTTCGTAATTTATATCCTTTTAATTTCCAGAAATGGATTGCAAACAAATGGATAACCGTCAAAATATAAAATACAAAATATCTGCATATTTCTATTATTTAAATTAATGTACAAAATTACAAATTCATCTTTTTTTTTTTTTTTTTTTTTAAATCAAATTAGTCATAATAAAATTTTGAAGTTTGAAAAATGTTAAAAAGACTAATTTTTGGAGTTGTTTGTAAGAATATTTGAAATATTTACGTACGATATGAAAATAATAATAAATGGATATAAGATATTTATGCAAATATTTAGATATTTATTTATAATAAAATATCAAATAAGAGGTGTGGTCAATTATAATTCAGGACTATAATTTAGAACTAAATATCTGTATTTGTATAGTTTAAAAATATAGTTTTTTTTTAAAAAAAATTAAATAACAAAATTAAGCTAAAATTTTTTTATGGGAATTTTTTTTAAAAAAAATTGTGTTAAATAGGTTGTATTTCAAAATTTTAAAAATTTAAGATCCTATTAAACTCAAAATTGAAAGTGCTTATACCATGATAGACAAAAAATTCAATAATTTTTTAATTTTTTTTAAATATTAAATATGCTAAACATCTAATCAATACTTTTAAAAATAATATATATATATATATATTTATAGTTTAGTATCACATTAAATAAAAAATTTAAAGGATATTTTTTTTGAAGGTTGACATCAAAAAGAAAAAAAAAATGGAAGGATTAAAGTTAGAATTGAATGGAAATTAGAGGAAAGGAAGTAAAAAGAAATTGGAGTTAAAAAGAATGGATAAGAAAGGTAAAAAGGGTCTGTTTTGTGAAGTAAGGGAATTGGATAAGTGAAGTTTATAGGCCCCATAATATCTTTATGCATAAACTGGATTCAAAGAAATAGAAAAAGGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGGGAAGCTTTTTAATAAAGGGAGAGAAATGAAGGGTTTGGTTAATAATGATTTCACTCACAGAAATGGAGGGTTTTGGTTTGGAGGCATGACAGACAGCTGCTGCACATCAGTCGTTTGGTGATTCGGACCCCTTTAGTTCCTGGACAAAATACCGACGCTAAATTATTGCCTTTCTCAAAAACCCCTCTCCTTTGTGTACCTCCCACCCCTCTTTCTCTCTCCTCACCTCTCTCCATTGTCAAGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGTATTCTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGTTTTTGCATCTGGGGTTGCGTTTTTCTCTTGGATCTGTTCTGGGGTTTCACTGATTAAGCTTCAGGTTTTGGTTTCAAGATCTGGGGTTTCTTTTCTCTTTCCTCCTACCCTTTTTTGAAGCGGTTTTAGGTTCTGAGTTGATTCTAGTTTGTTGGCTAGGGTTCGTGATGACTTCTGTACTGTTACTGAGTGTTTGAATCTGTCTGAATCCTTGGTTTCTTGTTTTGTTTGTCTGTTTTCATGTTTTTTCTTCACTTCTTCAATGTCTTGTCTGCGATATCTGCTTTCTGCTTTGTCTCTGACTGAATATTCATCTTGATTTTTGCTTTGCTAAATCCTTGGATGACATGTTCTTAGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGLQLCTKTNQALYHDPLQFGTSFSGWKTKRQTGELLIVCAEAAD
Homology
[Close]
BLAST of CmaCh18G006230 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 46 SCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          +CT + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 33 TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 82

[Close]
BLAST of CmaCh18G006230 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 55 KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 31 RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 71

[Close]
BLAST of CmaCh18G006230 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. ExPASy Swiss-Prot
Match: A4GYT5 (30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.2e-37
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 173

[Close]
BLAST of CmaCh18G006230 vs. ExPASy TrEMBL
Match: A0A443Q5G0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02772100 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 98

[Close]
BLAST of CmaCh18G006230 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 98

[Close]
BLAST of CmaCh18G006230 vs. ExPASy TrEMBL
Match: A0A6P6GKJ1 (uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC112488768 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 0 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDLS+
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDLSI 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFS I PKKPNSAL KVARVRLT GFE+T +IPG+
Sbjct: 61 NFSIIIPKKPNSALSKVARVRLTFGFEMTTFIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-43
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 9.8e-41
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLS+
Sbjct: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1  MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFSTITPK  NSALRKVARVRLTSGFEI AYIPG+
Sbjct: 61 NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 164.1 bits (414), Expect = 8.6e-37
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 173

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 98

[Close]
BLAST of CmaCh18G006230 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 63 STITPKKPNSALRKVARVRLTSGFEITAYIPG 95
          ST TPKKPNSA RK+A+VRL++  +I A+IPG
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPG 69

[Close]
BLAST of CmaCh18G006230 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 63 STITPKKPNSALRKVARVRLTSGFEITAYIPG 95
          ST TPKKPNSA RK+A+VRL++  +I A+IPG
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPG 69

The following BLAST results are available for this feature:
BLAST of CmaCh18G006230 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4GYN87.1e-1890.0030S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
A4QJX78.4e-1180.4930S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4QJV57.1e-1096.8830S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4GYT57.1e-1096.8830S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
Q3V5107.1e-1096.8830S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE... [more]
BLAST of CmaCh18G006230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F0L11.0e-4398.95uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383... [more]
A0A6A5N1Q84.2e-3789.36Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1[more]
A0A443Q5G01.2e-3690.4330S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O... [more]
A0A3S3NSS01.2e-3690.4330S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O... [more]
A0A6P6GKJ11.4e-3277.89uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC11248876... [more]
BLAST of CmaCh18G006230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932068.12.1e-4398.95uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar... [more]
XP_038902483.19.8e-4195.7930S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
XP_038896566.12.4e-3993.6830S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
KAF1876942.18.6e-3789.36hypothetical protein Lal_00033867 [Lupinus albus][more]
RWR98012.12.5e-3690.43LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran... [more]
BLAST of CmaCh18G006230 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.15.1e-1196.88ribosomal protein S12A [more]
ATCG01230.15.1e-1196.88ribosomal protein S12B [more]
ATCG00905.15.1e-1196.88ribosomal protein S12C [more]
AT2G07675.17.1e-0565.63Ribosomal protein S12/S23 family protein [more]
ATMG00980.17.1e-0565.63Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 83..102
score: 40.69
coord: 67..82
score: 91.32
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 58..96
e-value: 4.7E-13
score: 48.8
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 33..99
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 68..75
NoneNo IPR availableGENE3D2.40.50.140coord: 11..106
e-value: 2.6E-16
score: 61.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 33..99
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 60..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G006230.1CmaCh18G006230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome