Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAGAAGCAACCGGCGAACCCCACTGCAACTGCTGCGAGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGACTCAAGACCGCAGTAGACTCCGGCGACGGCCGATTTTCAGGCATCCAGACAGTGGTGCAGGAAGAAGAAAATATAGTGATGGAGAAGAGGAAGAAGAAAGGTTAGGGAAAAGTGCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACATGTTTTAAATTTAAAATTTTAATTTAAAAAAAAAACATATTATTTTATCCTTTTTGACGGATTTTTTAAATAGATTTCTAATTTCTCTTTTTTTGATATTCAAAATTTCAGAAATAAATAACGGATTAATTTTTGTAAATAAACATTTGTTTTACGGAATTTCCTATAAATACATGAAATTTTCCTTTAATTTGCAAGTGAAAAATTTATTTTGGAGATTCAAAACGAAAACAGACTCAGAACGATCATTATTCTTAAAAGGGGAGGCCAATCATAATCCACGGCTATTAGTCGCAACCCCGAAGGGACTGTTGGGGATGGATGTTACTCGAGAATAATGTTCACAGCTTCAAAATAATTATGAGTACGTATATTTAAACTTCTGACCTCAAGAGAAGGTTGGACGAACATATGTACGTTTTGTGGTTCGTGCATTAAAAGAACTATAATATACATTTTCTAACTACACTTCGGAATGGAATATTTGAACGATTCTCTTAAAACAGCTTTACATTTCAGTTATTCTTGCCCTGCTGCTGTTTCAATATCCCAACTTCTGTAG mRNA sequence ATGCAGAAGCAACCGGCGAACCCCACTGCAACTGCTGCGAGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGACTCAAGACCGCAGTAGACTCCGGCGACGGCCGATTTTCAGGCATCCAGACAGTGGTGCAGGAAGAAGAAAATATAGTGATGGAGAAGAGGAAGAAGAAAGTTATTCTTGCCCTGCTGCTGTTTCAATATCCCAACTTCTGTAG Coding sequence (CDS) ATGCAGAAGCAACCGGCGAACCCCACTGCAACTGCTGCGAGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGACTCAAGACCGCAGTAGACTCCGGCGACGGCCGATTTTCAGGCATCCAGACAGTGGTGCAGGAAGAAGAAAATATAGTGATGGAGAAGAGGAAGAAGAAAGTTATTCTTGCCCTGCTGCTGTTTCAATATCCCAACTTCTGTAG Protein sequence MQKQPANPTATAASSYTCCSFFLLTMTQDRSRLRRRPIFRHPDSGAGRRKYSDGEEEEESYSCPAAVSISQLL
Homology
BLAST of CmaCh14G014930.1 vs. NCBI nr
Match: KAG6582067.1 (hypothetical protein SDJN03_22069, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14 Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0 Query: 1 MQKQPANPTATAASSYTCCSFFLLTMTQDRSRLRRRPIFRHPDSGAGRR 50 MQKQPANPTAT A SYTCCSFFLLTM QDRSRLRRR I RHPDSG GR+ Sbjct: 52 MQKQPANPTATPAGSYTCCSFFLLTMIQDRSRLRRRLILRHPDSGGGRK 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6582067.1 | 3.2e-14 | 85.71 | hypothetical protein SDJN03_22069, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..57 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..62 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh14G014930.1:exon:1947 | CmaCh14G014930.1:exon:1947 | exon |
CmaCh14G014930.1:exon:1948 | CmaCh14G014930.1:exon:1948 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh14G014930.1:cds | CmaCh14G014930.1:cds_2 | CDS |
CmaCh14G014930.1:cds | CmaCh14G014930.1:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CmaCh14G014930.1 | CmaCh14G014930.1-protein | polypeptide |
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