CmaCh14G014930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G014930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 11313427 .. 11314388 (-)
RNA-Seq Expression	CmaCh14G014930
Synteny	CmaCh14G014930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAGCAACCGGCGAACCCCACTGCAACTGCTGCGAGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGACTCAAGACCGCAGTAGACTCCGGCGACGGCCGATTTTCAGGCATCCAGACAGTGGTGCAGGAAGAAGAAAATATAGTGATGGAGAAGAGGAAGAAGAAAGGTTAGGGAAAAGTGCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACATGTTTTAAATTTAAAATTTTAATTTAAAAAAAAAACATATTATTTTATCCTTTTTGACGGATTTTTTAAATAGATTTCTAATTTCTCTTTTTTTGATATTCAAAATTTCAGAAATAAATAACGGATTAATTTTTGTAAATAAACATTTGTTTTACGGAATTTCCTATAAATACATGAAATTTTCCTTTAATTTGCAAGTGAAAAATTTATTTTGGAGATTCAAAACGAAAACAGACTCAGAACGATCATTATTCTTAAAAGGGGAGGCCAATCATAATCCACGGCTATTAGTCGCAACCCCGAAGGGACTGTTGGGGATGGATGTTACTCGAGAATAATGTTCACAGCTTCAAAATAATTATGAGTACGTATATTTAAACTTCTGACCTCAAGAGAAGGTTGGACGAACATATGTACGTTTTGTGGTTCGTGCATTAAAAGAACTATAATATACATTTTCTAACTACACTTCGGAATGGAATATTTGAACGATTCTCTTAAAACAGCTTTACATTTCAGTTATTCTTGCCCTGCTGCTGTTTCAATATCCCAACTTCTGTAG

mRNA sequence

ATGCAGAAGCAACCGGCGAACCCCACTGCAACTGCTGCGAGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGACTCAAGACCGCAGTAGACTCCGGCGACGGCCGATTTTCAGGCATCCAGACAGTGGTGCAGGAAGAAGAAAATATAGTGATGGAGAAGAGGAAGAAGAAAGTTATTCTTGCCCTGCTGCTGTTTCAATATCCCAACTTCTGTAG

Coding sequence (CDS)

ATGCAGAAGCAACCGGCGAACCCCACTGCAACTGCTGCGAGCTCCTACACCTGCTGCAGCTTCTTCCTATTGACGATGACTCAAGACCGCAGTAGACTCCGGCGACGGCCGATTTTCAGGCATCCAGACAGTGGTGCAGGAAGAAGAAAATATAGTGATGGAGAAGAGGAAGAAGAAAGTTATTCTTGCCCTGCTGCTGTTTCAATATCCCAACTTCTGTAG

Protein sequence

MQKQPANPTATAASSYTCCSFFLLTMTQDRSRLRRRPIFRHPDSGAGRRKYSDGEEEEESYSCPAAVSISQLL

Homology

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BLAST of CmaCh14G014930 vs. NCBI nr
Match: KAG6582067.1 (hypothetical protein SDJN03_22069, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MQKQPANPTATAASSYTCCSFFLLTMTQDRSRLRRRPIFRHPDSGAGRR 50
           MQKQPANPTAT A SYTCCSFFLLTM QDRSRLRRR I RHPDSG GR+
Sbjct: 52  MQKQPANPTATPAGSYTCCSFFLLTMIQDRSRLRRRLILRHPDSGGGRK 100

The following BLAST results are available for this feature:

BLAST of CmaCh14G014930 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G014930 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G014930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582067.1	3.2e-14	85.71	hypothetical protein SDJN03_22069, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh14G014930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G014930.1	CmaCh14G014930.1	mRNA