CmaCh14G003860.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G003860.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 1756108 .. 1757741 (-)
Sequence length	600
RNA-Seq Expression	CmaCh14G003860.1
Synteny	CmaCh14G003860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATTATGGGGGTAATGCCAAACACGCCATATTTGATTTGGTTCGTAGCTATAAGAATTTGAAAATTTCCTATGATTTAATAATTTCATTATAAGTACACGTTAAAGCTCGCAAGTCATAATAAACATGACTACCACCCGCGAAAAAGATTTGTGACAATTACTTTAATATAAATGTGGTATTTTTTAATTGAATTAAAAATTAATTTAAAAAGTATACAATGATTTTTAGAAATTTAAACGGGAAATGAGCGAGCCATCTCAATCTAAGCTCGAGCGGTCTGGGAGAATTCTCGAAGTAATCTTTGTTATGGTCAAACCTTGACTACGCTTCCTATCCATTTGACAGTTTTTGAAGGTTTAATGAATTTAAGTATGCTAATAATGGTCAAATAAATAAGCAACCATAGCATTTCCTAAAAATAAAATATTTGATTAACAAATTTTTAAGAGAATCTGCAAAAGTACCCTAAACGATCAATGAGTGTACTAATCACGCGCTCGTTCCTTGTTTTGTTAATTCAAACGGTTCGTAGCTAAAATTTACAATTAAGTCCTTAATAATATTATAAAATAATGGTTACAACTTTATTTATTTATACAAAATTTGGGGTAATTTTTGAAGGGTAAAAAACGTAATAAATTACAGTCTATAAAGACGTAAAATTGAAGGATATAATTGTAATTGGAGACATTATTTTTGAGATTTTTACAAAAAGAAAATGATGAGTGAAATGACGAGATAATTAATTAGTTGGTATAAAAGCTCCGACGAACAAACCTCTAACGGATCGGCGAGTCTCTCCGAAATCTGGCCGTCCATCTCTCTCTCCCTCTCTCGCTCGTTCGCGTCTCTTTCTCTCTGCTCAAACTTCTCTCTTCTCTCTCATCAACAATATCGCTGAAATCGAGAAACCCGACTGAAAAAGACCTGATACAACAAATAATTCCATTTAATTTAGGGTTTTCCAAATCTCTCTTCTTCTCTTCCCCTCCAAATTCTGTTTCCCTCCATAAAAGGTATCCCAGCTTTGGTGTTCCCCTGTGTTTTTTTTTTTTTTTTTTTTAATTATTGTTTACGGGCTATAAGCTTGATTTTTCGATTCGAAGAAAGTGGGGGAACGTTTTCTGTTATCTGGGTTGTTTTGGCCGCTGAGTTTCTTTAATTTCTCGTTCTCGAATCAGATTTTGTTTGGGGGAAATGGATTTTTCGCGGGAAAATACGAACAGTTTGTGATTGTCAGCACTTTCTACGCCTTCTTCGGTCATTTTAGCTCTTTTAAGGTATGGAGGTTTCTTACTTTCGCTCGTTTCGTGTTATGGTTTTGTGGAAATGATTTTTGAAATGGAGGAAAAAATGGCCCTGAAATGACGTTTTTGTGAACGTTCATTGATTTATCTGTTCGCTGATCTAGGTTGTTGTAGTGGTATGATGATTTCTTATTATTAAGTTCTGACTTCATTTCATTTTCCCAATTAGGTAGTTTTGTTTCCTTTGTTTCTGATATTGGAGGAAGAAGAGCTGTTGTTAGGAGGGGAGAGAATTGTATACAGAAGTCCACAATTCAGGAGAGTGGATTTGAGCACTTCAATGCCGGGTCATTTTTATCTTGTTTGGATTCATCTTTAG

mRNA sequence

ATGGAAAATTATGGGGGTAATGCCAAACACGCCATATTTGATTTGTCTCTCCGAAATCTGGCCGTCCATCTCTCTCTCCCTCTCTCGCTCGTTCGCGTCTCTTTCTCTCTGCTCAAACTTCTCTCTTCTCTCTCATCAACAATATCGCTGAAATCGAGAAACCCGACTGAAAAAGACCTGATACAACAAATAATTCCATTTAATTTAGGGTTTTCCAAATCTCTCTTCTTCTCTTCCCCTCCAAATTCTGTTTCCCTCCATAAAAGGTATCCCAGCTTTGTGGGGGAACGTTTTCTGTTATCTGGGTTGTTTTGGCCGCTGAGTTTCTTTAATTTCTCGTTCTCGAATCAGATTTTGTTTGGGGGAAATGGATTTTTCGCGGGAAAATACGAACAGTTTGTGATTGTCAGCACTTTCTACGCCTTCTTCGGTCATTTTAGCTCTTTTAAGGTAGTTTTGTTTCCTTTGTTTCTGATATTGGAGGAAGAAGAGCTGTTGTTAGGAGGGGAGAGAATTGTATACAGAAGTCCACAATTCAGGAGAGTGGATTTGAGCACTTCAATGCCGGGTCATTTTTATCTTGTTTGGATTCATCTTTAG

Coding sequence (CDS)

ATGGAAAATTATGGGGGTAATGCCAAACACGCCATATTTGATTTGTCTCTCCGAAATCTGGCCGTCCATCTCTCTCTCCCTCTCTCGCTCGTTCGCGTCTCTTTCTCTCTGCTCAAACTTCTCTCTTCTCTCTCATCAACAATATCGCTGAAATCGAGAAACCCGACTGAAAAAGACCTGATACAACAAATAATTCCATTTAATTTAGGGTTTTCCAAATCTCTCTTCTTCTCTTCCCCTCCAAATTCTGTTTCCCTCCATAAAAGGTATCCCAGCTTTGTGGGGGAACGTTTTCTGTTATCTGGGTTGTTTTGGCCGCTGAGTTTCTTTAATTTCTCGTTCTCGAATCAGATTTTGTTTGGGGGAAATGGATTTTTCGCGGGAAAATACGAACAGTTTGTGATTGTCAGCACTTTCTACGCCTTCTTCGGTCATTTTAGCTCTTTTAAGGTAGTTTTGTTTCCTTTGTTTCTGATATTGGAGGAAGAAGAGCTGTTGTTAGGAGGGGAGAGAATTGTATACAGAAGTCCACAATTCAGGAGAGTGGATTTGAGCACTTCAATGCCGGGTCATTTTTATCTTGTTTGGATTCATCTTTAG

Protein sequence

MENYGGNAKHAIFDLSLRNLAVHLSLPLSLVRVSFSLLKLLSSLSSTISLKSRNPTEKDLIQQIIPFNLGFSKSLFFSSPPNSVSLHKRYPSFVGERFLLSGLFWPLSFFNFSFSNQILFGGNGFFAGKYEQFVIVSTFYAFFGHFSSFKVVLFPLFLILEEEELLLGGERIVYRSPQFRRVDLSTSMPGHFYLVWIHL

Homology

[Close]

BLAST of CmaCh14G003860.1 vs. NCBI nr
Match: KAG6580775.1 (Myosin-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 6.2e-28
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 118 ILFGGNGFFAGKYEQFVIVSTFYAFFGHFSSFKVVLFPLFLILEEEELLLGGERIVYRSP 177
           ILFGGNGFFAGKYEQFVI S+FYAFFGHFSS KVVLFPLFLILEEEELLLGGERIVYRSP
Sbjct: 23  ILFGGNGFFAGKYEQFVIFSSFYAFFGHFSSCKVVLFPLFLILEEEELLLGGERIVYRSP 82

Query: 178 QFRRVDLSTSMP 190
           QF+RVDLSTSMP
Sbjct: 83  QFKRVDLSTSMP 94

[Close]

BLAST of CmaCh14G003860.1 vs. NCBI nr
Match: KAG7028185.1 (hypothetical protein SDJN02_09365, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-14
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 118 ILFGGNGFFAGKYEQFVIVSTFYAFFGHFSSFKVVLFPLFLILEEEELLLGGERIVYRSP 177
           ILFGG G FAGKY+QFVI+++F AF G FSSFKVVLFP+FLI EEE+L+LGGERI YR+P
Sbjct: 29  ILFGGIGIFAGKYQQFVILNSFPAFSGRFSSFKVVLFPVFLISEEEDLILGGERIKYRNP 88

The following BLAST results are available for this feature:

BLAST of CmaCh14G003860.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G003860.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G003860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580775.1	6.2e-28	94.44	Myosin-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028185.1	5.1e-14	75.00	hypothetical protein SDJN02_09365, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh14G003860.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G003860	CmaCh14G003860	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G003860.1:exon:2225	CmaCh14G003860.1:exon:2225	exon
CmaCh14G003860.1:exon:2224	CmaCh14G003860.1:exon:2224	exon
CmaCh14G003860.1:exon:2223	CmaCh14G003860.1:exon:2223	exon
CmaCh14G003860.1:exon:2222	CmaCh14G003860.1:exon:2222	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G003860.1:cds	CmaCh14G003860.1:cds_4	CDS
CmaCh14G003860.1:cds	CmaCh14G003860.1:cds_3	CDS
CmaCh14G003860.1:cds	CmaCh14G003860.1:cds_2	CDS
CmaCh14G003860.1:cds	CmaCh14G003860.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G003860.1	CmaCh14G003860.1-protein	polypeptide