CmaCh14G003860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G003860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 1756108 .. 1757741 (-)
RNA-Seq Expression	CmaCh14G003860
Synteny	CmaCh14G003860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATTATGGGGGTAATGCCAAACACGCCATATTTGATTTGGTTCGTAGCTATAAGAATTTGAAAATTTCCTATGATTTAATAATTTCATTATAAGTACACGTTAAAGCTCGCAAGTCATAATAAACATGACTACCACCCGCGAAAAAGATTTGTGACAATTACTTTAATATAAATGTGGTATTTTTTAATTGAATTAAAAATTAATTTAAAAAGTATACAATGATTTTTAGAAATTTAAACGGGAAATGAGCGAGCCATCTCAATCTAAGCTCGAGCGGTCTGGGAGAATTCTCGAAGTAATCTTTGTTATGGTCAAACCTTGACTACGCTTCCTATCCATTTGACAGTTTTTGAAGGTTTAATGAATTTAAGTATGCTAATAATGGTCAAATAAATAAGCAACCATAGCATTTCCTAAAAATAAAATATTTGATTAACAAATTTTTAAGAGAATCTGCAAAAGTACCCTAAACGATCAATGAGTGTACTAATCACGCGCTCGTTCCTTGTTTTGTTAATTCAAACGGTTCGTAGCTAAAATTTACAATTAAGTCCTTAATAATATTATAAAATAATGGTTACAACTTTATTTATTTATACAAAATTTGGGGTAATTTTTGAAGGGTAAAAAACGTAATAAATTACAGTCTATAAAGACGTAAAATTGAAGGATATAATTGTAATTGGAGACATTATTTTTGAGATTTTTACAAAAAGAAAATGATGAGTGAAATGACGAGATAATTAATTAGTTGGTATAAAAGCTCCGACGAACAAACCTCTAACGGATCGGCGAGTCTCTCCGAAATCTGGCCGTCCATCTCTCTCTCCCTCTCTCGCTCGTTCGCGTCTCTTTCTCTCTGCTCAAACTTCTCTCTTCTCTCTCATCAACAATATCGCTGAAATCGAGAAACCCGACTGAAAAAGACCTGATACAACAAATAATTCCATTTAATTTAGGGTTTTCCAAATCTCTCTTCTTCTCTTCCCCTCCAAATTCTGTTTCCCTCCATAAAAGGTATCCCAGCTTTGGTGTTCCCCTGTGTTTTTTTTTTTTTTTTTTTTAATTATTGTTTACGGGCTATAAGCTTGATTTTTCGATTCGAAGAAAGTGGGGGAACGTTTTCTGTTATCTGGGTTGTTTTGGCCGCTGAGTTTCTTTAATTTCTCGTTCTCGAATCAGATTTTGTTTGGGGGAAATGGATTTTTCGCGGGAAAATACGAACAGTTTGTGATTGTCAGCACTTTCTACGCCTTCTTCGGTCATTTTAGCTCTTTTAAGGTATGGAGGTTTCTTACTTTCGCTCGTTTCGTGTTATGGTTTTGTGGAAATGATTTTTGAAATGGAGGAAAAAATGGCCCTGAAATGACGTTTTTGTGAACGTTCATTGATTTATCTGTTCGCTGATCTAGGTTGTTGTAGTGGTATGATGATTTCTTATTATTAAGTTCTGACTTCATTTCATTTTCCCAATTAGGTAGTTTTGTTTCCTTTGTTTCTGATATTGGAGGAAGAAGAGCTGTTGTTAGGAGGGGAGAGAATTGTATACAGAAGTCCACAATTCAGGAGAGTGGATTTGAGCACTTCAATGCCGGGTCATTTTTATCTTGTTTGGATTCATCTTTAG

mRNA sequence

ATGGAAAATTATGGGGGTAATGCCAAACACGCCATATTTGATTTGTCTCTCCGAAATCTGGCCGTCCATCTCTCTCTCCCTCTCTCGCTCGTTCGCGTCTCTTTCTCTCTGCTCAAACTTCTCTCTTCTCTCTCATCAACAATATCGCTGAAATCGAGAAACCCGACTGAAAAAGACCTGATACAACAAATAATTCCATTTAATTTAGGGTTTTCCAAATCTCTCTTCTTCTCTTCCCCTCCAAATTCTGTTTCCCTCCATAAAAGGTATCCCAGCTTTGTGGGGGAACGTTTTCTGTTATCTGGGTTGTTTTGGCCGCTGAGTTTCTTTAATTTCTCGTTCTCGAATCAGATTTTGTTTGGGGGAAATGGATTTTTCGCGGGAAAATACGAACAGTTTGTGATTGTCAGCACTTTCTACGCCTTCTTCGGTCATTTTAGCTCTTTTAAGGTAGTTTTGTTTCCTTTGTTTCTGATATTGGAGGAAGAAGAGCTGTTGTTAGGAGGGGAGAGAATTGTATACAGAAGTCCACAATTCAGGAGAGTGGATTTGAGCACTTCAATGCCGGGTCATTTTTATCTTGTTTGGATTCATCTTTAG

Coding sequence (CDS)

ATGGAAAATTATGGGGGTAATGCCAAACACGCCATATTTGATTTGTCTCTCCGAAATCTGGCCGTCCATCTCTCTCTCCCTCTCTCGCTCGTTCGCGTCTCTTTCTCTCTGCTCAAACTTCTCTCTTCTCTCTCATCAACAATATCGCTGAAATCGAGAAACCCGACTGAAAAAGACCTGATACAACAAATAATTCCATTTAATTTAGGGTTTTCCAAATCTCTCTTCTTCTCTTCCCCTCCAAATTCTGTTTCCCTCCATAAAAGGTATCCCAGCTTTGTGGGGGAACGTTTTCTGTTATCTGGGTTGTTTTGGCCGCTGAGTTTCTTTAATTTCTCGTTCTCGAATCAGATTTTGTTTGGGGGAAATGGATTTTTCGCGGGAAAATACGAACAGTTTGTGATTGTCAGCACTTTCTACGCCTTCTTCGGTCATTTTAGCTCTTTTAAGGTAGTTTTGTTTCCTTTGTTTCTGATATTGGAGGAAGAAGAGCTGTTGTTAGGAGGGGAGAGAATTGTATACAGAAGTCCACAATTCAGGAGAGTGGATTTGAGCACTTCAATGCCGGGTCATTTTTATCTTGTTTGGATTCATCTTTAG

Protein sequence

MENYGGNAKHAIFDLSLRNLAVHLSLPLSLVRVSFSLLKLLSSLSSTISLKSRNPTEKDLIQQIIPFNLGFSKSLFFSSPPNSVSLHKRYPSFVGERFLLSGLFWPLSFFNFSFSNQILFGGNGFFAGKYEQFVIVSTFYAFFGHFSSFKVVLFPLFLILEEEELLLGGERIVYRSPQFRRVDLSTSMPGHFYLVWIHL

Homology

[Close]

BLAST of CmaCh14G003860 vs. NCBI nr
Match: KAG6580775.1 (Myosin-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 6.2e-28
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 118 ILFGGNGFFAGKYEQFVIVSTFYAFFGHFSSFKVVLFPLFLILEEEELLLGGERIVYRSP 177
           ILFGGNGFFAGKYEQFVI S+FYAFFGHFSS KVVLFPLFLILEEEELLLGGERIVYRSP
Sbjct: 23  ILFGGNGFFAGKYEQFVIFSSFYAFFGHFSSCKVVLFPLFLILEEEELLLGGERIVYRSP 82

Query: 178 QFRRVDLSTSMP 190
           QF+RVDLSTSMP
Sbjct: 83  QFKRVDLSTSMP 94

[Close]

BLAST of CmaCh14G003860 vs. NCBI nr
Match: KAG7028185.1 (hypothetical protein SDJN02_09365, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-14
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 118 ILFGGNGFFAGKYEQFVIVSTFYAFFGHFSSFKVVLFPLFLILEEEELLLGGERIVYRSP 177
           ILFGG G FAGKY+QFVI+++F AF G FSSFKVVLFP+FLI EEE+L+LGGERI YR+P
Sbjct: 29  ILFGGIGIFAGKYQQFVILNSFPAFSGRFSSFKVVLFPVFLISEEEDLILGGERIKYRNP 88

The following BLAST results are available for this feature:

BLAST of CmaCh14G003860 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G003860 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G003860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580775.1	6.2e-28	94.44	Myosin-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028185.1	5.1e-14	75.00	hypothetical protein SDJN02_09365, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh14G003860 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G003860.1	CmaCh14G003860.1	mRNA