CmaCh14G000650.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G000650.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	FCP1 homology domain-containing protein
Location	Cma_Chr14: 289190 .. 290258 (+)
Sequence length	615
RNA-Seq Expression	CmaCh14G000650.1
Synteny	CmaCh14G000650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAAAATGGAGGTCTGCGCGCCGAGGTCTCTGCAAGTTTGGCGATCTTTGATGGGCTGGCTCTCTTTCATTTCTCCTATAATTGTTCAGATCGTGCATGGTGCTCCTTCTTTGGCTTAGGTTTTGTCCTGCGTTGGTGTTAGATTCCCTCTTCTTGCCTCATCTGCGCCCTCTTTCAAGCCCTTGCCCGATGCTTAGCTTCCTCTTCATCAGTTTTCAGCAAAGAAAGTTGGCTCTCTCAGTGTTGTGGATGATCGTGGAAGTCAAGGTCTCCCTTGGGAAAAGATTACGGTAACGTGCGTCGTGTCTTCTTCTTTCCTTTTATAATTTTGAAGAAATTTTGAGGCTAAATTGACGATTGTGGACATTGTAGAAGTACGAAGATGAGGCAATCTTTGTCGTCGAATTCTTAGATGATAGAGCGTCGGTATCGGTACGTGATTTCCTAGTTTAGATGTTATTTTGAATTGAATTATAAATTCCGTTGGTTATGGACTTCCACCGTATTTCTTTTAGCTATCATTGCTATCTATATTCGGAGACCTGTTGTTAATAAGGTTGGGATCAAACCAAGGTTAGGTTTATGCATTTGCCATGCTAGTGTTTTAAATACTTCAATTGCTCATTCAGGTGGTTCTTAATTTGGATGAAACCAGGGTTTGTGCATATGAAGCATCCAGTTGCCAGCCGTTTCTGGCATTCAAGCAACAGAAGCTGGATTTAATTGGTCCGAGCTGGAATGTGTATCCTCGGACAAGGTACCTCTGGATTTCTCTTTCTAGCTTACAGTCTTTTGAAACTTTCCTTGAAATTTATATTATTCATCAATTAATGTTGGAAGCTCTGTTGACGGAATGTGAAGGAAAACCAAAGATCAGTTATATGACCCTATTCGAACGTCCTGGATTGCATGAGTTCTTGAGCCAGGCTATTGATTTTCCGAACGTATATTACTCACTGCTGGTCTTGAAGGTTTGACATTGATTAATCGGTCTCTTTTGTGACTTTCCCCTTGTTATTCCATTGTCATATGTGGTCTTTTGCAGATGTACAGGATATGCTAG

mRNA sequence

ATGGCGGCAAAATGGAGATCGTGCATGGTGCTCCTTCTTTGGCTTAGGTTTTGTCCTGCGTTGGTGTTAGATTCCCTCTTCTTGCCTCATCTGCGCCCTCTTTCAAGCCCTTGCCCGATGCTTAGCTTCCTCTTCATCAGTTTTCAGCAAAGAAAGTTGGCTCTCTCAGTGTTGTGGATGATCGTGGAAGTCAAGAAGTACGAAGATGAGGCAATCTTTGTCGTCGAATTCTTAGATGATAGAGCGTCGGTATCGGTGGTTCTTAATTTGGATGAAACCAGGGTTTGTGCATATGAAGCATCCAGTTGCCAGCCGTTTCTGGCATTCAAGCAACAGAAGCTGGATTTAATTGGTCCGAGCTGGAATGTGTATCCTCGGACAAGGTACCTCTGGATTTCTCTTTCTAGCTTACAGTCTTTTGAAACTTTCCTTGAAATTTATATTATTCATCAATTAATGTTGGAAGCTCTGTTGACGGAATGTGAAGGAAAACCAAAGATCAGTTATATGACCCTATTCGAACGTCCTGGATTGCATGAGTTCTTGAGCCAGGCTATTGATTTTCCGAACGTATATTACTCACTGCTGGTCTTGAAGATGTACAGGATATGCTAG

Coding sequence (CDS)

ATGGCGGCAAAATGGAGATCGTGCATGGTGCTCCTTCTTTGGCTTAGGTTTTGTCCTGCGTTGGTGTTAGATTCCCTCTTCTTGCCTCATCTGCGCCCTCTTTCAAGCCCTTGCCCGATGCTTAGCTTCCTCTTCATCAGTTTTCAGCAAAGAAAGTTGGCTCTCTCAGTGTTGTGGATGATCGTGGAAGTCAAGAAGTACGAAGATGAGGCAATCTTTGTCGTCGAATTCTTAGATGATAGAGCGTCGGTATCGGTGGTTCTTAATTTGGATGAAACCAGGGTTTGTGCATATGAAGCATCCAGTTGCCAGCCGTTTCTGGCATTCAAGCAACAGAAGCTGGATTTAATTGGTCCGAGCTGGAATGTGTATCCTCGGACAAGGTACCTCTGGATTTCTCTTTCTAGCTTACAGTCTTTTGAAACTTTCCTTGAAATTTATATTATTCATCAATTAATGTTGGAAGCTCTGTTGACGGAATGTGAAGGAAAACCAAAGATCAGTTATATGACCCTATTCGAACGTCCTGGATTGCATGAGTTCTTGAGCCAGGCTATTGATTTTCCGAACGTATATTACTCACTGCTGGTCTTGAAGATGTACAGGATATGCTAG

Protein sequence

MAAKWRSCMVLLLWLRFCPALVLDSLFLPHLRPLSSPCPMLSFLFISFQQRKLALSVLWMIVEVKKYEDEAIFVVEFLDDRASVSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETFLEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEFLSQAIDFPNVYYSLLVLKMYRIC

Homology

[Close]

BLAST of CmaCh14G000650.1 vs. ExPASy TrEMBL
Match: A0A1R3I0C3 (NLI interacting factor OS=Corchorus olitorius OX=93759 GN=COLO4_25730 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 0


Query: 62  VEVKKYEDEAIFVVEFLDDRASVSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSW 121
           VE+    D ++   E   ++  ++VVL+LDET VCAYE SS  P  A + Q  D      
Sbjct: 80  VEIAAVLDSSVLAEENRIEK--LTVVLDLDETLVCAYETSSLPP--ALRNQATD------ 139

Query: 122 NVYPRTRYLWISLSSLQSFETFLEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEF 181
                    W  L  + S +                  ECEGKPKI+Y+T+FERPGLHEF
Sbjct: 140 -----AGLKWFELECVSSDK------------------ECEGKPKINYVTVFERPGLHEF 173

Query: 182 LSQAIDF 189
           LSQ  +F
Sbjct: 200 LSQLSEF 173

[Close]

BLAST of CmaCh14G000650.1 vs. ExPASy TrEMBL
Match: A0A0K9RJJ1 (FCP1 homology domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_059350 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 84  VSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETF 143
           ++VVL+LDET VCAYE SS  P L  +  +  L              W  L  + S +  
Sbjct: 109 LTVVLDLDETLVCAYETSSLPPTLCTQATEAGLD-------------WFELECVSSDK-- 168

Query: 144 LEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEFLSQAIDFPNV 192
                           ECEGKPKISY+T+FERPGL+EFL Q  +F ++
Sbjct: 169 ----------------ECEGKPKISYVTVFERPGLNEFLEQLSEFADL 185

[Close]

BLAST of CmaCh14G000650.1 vs. ExPASy TrEMBL
Match: A0A1R3FW86 (NLI interacting factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_30631 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 84  VSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETF 143
           ++VVL+LDET VCAYE SS  P  A + Q  D               W  L  + S +  
Sbjct: 100 LTVVLDLDETLVCAYETSSLPP--ALRNQATD-----------AGLKWFELECVSSDK-- 159

Query: 144 LEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEFLSQAIDF 189
                           ECEGKPKI+Y+ +FERPGLHEFLSQ  +F
Sbjct: 160 ----------------ECEGKPKINYVMVFERPGLHEFLSQLSEF 173

[Close]

BLAST of CmaCh14G000650.1 vs. ExPASy TrEMBL
Match: A0A5J5AUC2 (FCP1 homology domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031737 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 47/143 (32.87%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 61  IVEVKKYEDEAIFVVEFLDDRASVS------------VVLNLDETRVCAYEASSCQPFLA 120
           +VE+++ E  A   V+  D R +VS            VVL+LDET VCAYE S     + 
Sbjct: 70  VVELQERESAAAAAVQITDGRVTVSDDDDDRHMEKLTVVLDLDETLVCAYETSGLPAIVC 129

Query: 121 FKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETFLEIYIIHQLMLEALLTECEGKPKIS 180
            +  +  L              W  L  L S +                  ECEGKPK++
Sbjct: 130 NQATEAGL-------------KWFELECLSSDK------------------ECEGKPKVN 181

Query: 181 YMTLFERPGLHEFLSQAIDFPNV 192
           Y+T+FERPGL EFL+Q  +F ++
Sbjct: 190 YVTVFERPGLQEFLNQLSEFADL 181

[Close]

BLAST of CmaCh14G000650.1 vs. ExPASy TrEMBL
Match: A0A7C8Z8H9 (Protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 42/107 (39.25%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 85  SVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETFL 144
           +VVL+LDET VCAYE S   P L  +  +  L              W  L  + S +   
Sbjct: 103 TVVLDLDETLVCAYETSCLPPTLCTQATEAGL-------------KWFELECVSSEK--- 162

Query: 145 EIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEFLSQAIDFPNV 192
                          ECEGKPKISY+T+FERPGLHEFL Q   F ++
Sbjct: 163 ---------------ECEGKPKISYVTVFERPGLHEFLKQLSKFADL 178

[Close]

BLAST of CmaCh14G000650.1 vs. NCBI nr
Match: XP_010689631.1 (PREDICTED: CTD nuclear envelope phosphatase 1 homolog [Beta vulgaris subsp. vulgaris] >KMT18199.1 hypothetical protein BVRB_2g023710 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-09
Identity = 51/142 (35.92%), Postives = 66/142 (46.48%), Query Frame = 0


Query: 61  IVEVKKYEDEAIFVVEFLDDRASV-----------SVVLNLDETRVCAYEASSCQPFLAF 120
           +VE+  +   A  V   +DD A V           +VVL+LDET VCAYE SS  P L  
Sbjct: 71  VVEIPLHSSSATAVDIGVDDDAEVGDSVVSPSDKLTVVLDLDETLVCAYETSSLPPALCT 130

Query: 121 KQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETFLEIYIIHQLMLEALLTECEGKPKISY 180
           +  +  L              W  L  + S +                  ECEGKPKISY
Sbjct: 131 QATEAGL-------------KWFELECISSDK------------------ECEGKPKISY 181

Query: 181 MTLFERPGLHEFLSQAIDFPNV 192
           +T+FERPGLHEFL Q  +F ++
Sbjct: 191 VTVFERPGLHEFLVQLSEFADL 181

[Close]

BLAST of CmaCh14G000650.1 vs. NCBI nr
Match: KAG6580473.1 (hypothetical protein SDJN03_20475, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-09
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 66  KYEDEAIFVVEFLDDRASVSVVLNLDETRVCAYEASS 103
           KY+DEAIFVVEFLDDRASVSVVLNLDETRVCAYE SS
Sbjct: 65  KYDDEAIFVVEFLDDRASVSVVLNLDETRVCAYETSS 101

[Close]

BLAST of CmaCh14G000650.1 vs. NCBI nr
Match: OMO76020.1 (NLI interacting factor [Corchorus olitorius])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 0


Query: 62  VEVKKYEDEAIFVVEFLDDRASVSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSW 121
           VE+    D ++   E   ++  ++VVL+LDET VCAYE SS  P  A + Q  D      
Sbjct: 80  VEIAAVLDSSVLAEENRIEK--LTVVLDLDETLVCAYETSSLPP--ALRNQATD------ 139

Query: 122 NVYPRTRYLWISLSSLQSFETFLEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEF 181
                    W  L  + S +                  ECEGKPKI+Y+T+FERPGLHEF
Sbjct: 140 -----AGLKWFELECVSSDK------------------ECEGKPKINYVTVFERPGLHEF 173

Query: 182 LSQAIDF 189
           LSQ  +F
Sbjct: 200 LSQLSEF 173

[Close]

BLAST of CmaCh14G000650.1 vs. NCBI nr
Match: XP_021862770.1 (CTD nuclear envelope phosphatase 1 homolog [Spinacia oleracea] >KNA19645.1 hypothetical protein SOVF_059350 [Spinacia oleracea])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-08
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 84  VSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETF 143
           ++VVL+LDET VCAYE SS  P L  +  +  L              W  L  + S +  
Sbjct: 109 LTVVLDLDETLVCAYETSSLPPTLCTQATEAGLD-------------WFELECVSSDK-- 168

Query: 144 LEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEFLSQAIDFPNV 192
                           ECEGKPKISY+T+FERPGL+EFL Q  +F ++
Sbjct: 169 ----------------ECEGKPKISYVTVFERPGLNEFLEQLSEFADL 185

[Close]

BLAST of CmaCh14G000650.1 vs. NCBI nr
Match: OMO50103.1 (NLI interacting factor [Corchorus capsularis])

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-08
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 84  VSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETF 143
           ++VVL+LDET VCAYE SS  P  A + Q  D               W  L  + S +  
Sbjct: 100 LTVVLDLDETLVCAYETSSLPP--ALRNQATD-----------AGLKWFELECVSSDK-- 159

Query: 144 LEIYIIHQLMLEALLTECEGKPKISYMTLFERPGLHEFLSQAIDF 189
                           ECEGKPKI+Y+ +FERPGLHEFLSQ  +F
Sbjct: 160 ----------------ECEGKPKINYVMVFERPGLHEFLSQLSEF 173

[Close]

BLAST of CmaCh14G000650.1 vs. TAIR 10
Match: AT3G55960.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-10
Identity = 43/110 (39.09%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 84  VSVVLNLDETRVCAYEASSCQPFLAFKQQKLDLIGPSWNVYPRTRYLWISLSSLQSFETF 143
           + VVL+LDET VCAYE SS     A + Q ++                   + L+ FE  
Sbjct: 98  LKVVLDLDETLVCAYETSSLP--AALRNQAIE-------------------AGLKWFE-- 157

Query: 144 LEIYIIHQLMLEALLT--ECEGKPKISYMTLFERPGLHEFLSQAIDFPNV 192
                     LE L T  E +GKPKI+Y+T+FERPGLHEFL Q  +F ++
Sbjct: 158 ----------LECLSTDKEYDGKPKINYVTVFERPGLHEFLEQLSEFADL 174

The following BLAST results are available for this feature:

BLAST of CmaCh14G000650.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G000650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3I0C3	5.5e-09	37.80	NLI interacting factor OS=Corchorus olitorius OX=93759 GN=COLO4_25730 PE=4 SV=1	[more]
A0A0K9RJJ1	2.1e-08	38.89	FCP1 homology domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_059...	[more]
A0A1R3FW86	2.7e-08	40.95	NLI interacting factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_30631 PE=4 S...	[more]
A0A5J5AUC2	2.7e-08	32.87	FCP1 homology domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031...	[more]
A0A7C8Z8H9	2.7e-08	39.25	Protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=...	[more]

BLAST of CmaCh14G000650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010689631.1	3.9e-09	35.92	PREDICTED: CTD nuclear envelope phosphatase 1 homolog [Beta vulgaris subsp. vulg...	[more]
KAG6580473.1	8.7e-09	94.59	hypothetical protein SDJN03_20475, partial [Cucurbita argyrosperma subsp. sorori...	[more]
OMO76020.1	1.1e-08	37.80	NLI interacting factor [Corchorus olitorius]	[more]
XP_021862770.1	4.3e-08	38.89	CTD nuclear envelope phosphatase 1 homolog [Spinacia oleracea] >KNA19645.1 hypot...	[more]
OMO50103.1	5.6e-08	40.95	NLI interacting factor [Corchorus capsularis]	[more]

BLAST of CmaCh14G000650.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55960.1	3.7e-10	39.09	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G000650	CmaCh14G000650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G000650.1:exon:169	CmaCh14G000650.1:exon:169	exon
CmaCh14G000650.1:exon:170	CmaCh14G000650.1:exon:170	exon
CmaCh14G000650.1:exon:171	CmaCh14G000650.1:exon:171	exon
CmaCh14G000650.1:exon:172	CmaCh14G000650.1:exon:172	exon
CmaCh14G000650.1:exon:173	CmaCh14G000650.1:exon:173	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G000650.1:cds	CmaCh14G000650.1:cds	CDS
CmaCh14G000650.1:cds	CmaCh14G000650.1:cds_2	CDS
CmaCh14G000650.1:cds	CmaCh14G000650.1:cds_3	CDS
CmaCh14G000650.1:cds	CmaCh14G000650.1:cds_4	CDS
CmaCh14G000650.1:cds	CmaCh14G000650.1:cds_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G000650.1	CmaCh14G000650.1-protein	polypeptide