CmaCh13G002490.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G002490.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 2065330 .. 2071336 (-)
Sequence length3719
RNA-Seq ExpressionCmaCh13G002490.1
SyntenyCmaCh13G002490.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTGTTTTAGAGTGGCTGTGTTCGATCAGATTCCAACTCCAGTCCTTGAAATTGAATGCTGTTCTTATTAAGACGATCAGATTATATCAACCAAATTATCAACGGAGAGATGAAATTCAGCTAACCTATTACAGAAATGAATCGTTGAAAAGAAGCAAAGAATCATGGAGAACGAATCAGAATTTTGCACAGTGCGAAGGCAGACCAGTCTCATGGTTCACCGCTACAATCTCAGAAACTTCACATTTCAGCACATCTTGCCCTAGCTTGGCTCCGGCGGACTTGAGTCCCTTCAACGACACCGGTTGATTGAAGAGGTTCAGCGATGGAAGTCTCGAAGCCGCCGGTAATTTCCCATTCGGTAAGAAGTTCCCGAAGTTTTCTTTCAATAATGGAACCTCGAAATCTTCCTTCTTGTGCTTCACGATATTGTCCTTTGCACTTATGTGAGCTCCTGGTTCCATGTGGTTCGTTGAAAAACTGGCTTGATTTGGGAAGTTAGGGTATAGACTTACGTAGCCTCTTAAGTACATCATGTCGATTAGGAACTTCTTCCATGATGCTTGCCAACCGTTTGTTCTAGATTTAGGGATCTGAACTGGATTCTCTTTTGCATTTTCCGTGTATCTTGTGTTCATGTAAACATAAAACTCCCTCCAATGTTTGGGGAAGAAAACTGCTCCCCAACTGCAGGGGAGCTGGTGGAGGTAAGGTGTGTTTGGATGAATCCGCTTGAAGAACTCTGTTGCATTCCATTTAGGTCTTTCTTTAACCACTTCGACTAGCCGAGGCGTGTAGAGGGAGATCGATGATAGCTCGGGTAGAGATATTTGTGGATCGTAGTGGTATGCTAGGAGGGCGTATTTGATCCAAAGGTAGTAGTATGGAGAGACTTCAATATCGTCTTCGAGTAGGAGTCCATAATCGTCGTCCGAAGCAGGATACCAACTCTCGCTTACAGCTCGTATCAGCCCTCCTTGGATGATTCTTCTTCTGAGGCTTTTGGGGCCATGAGGCCACTCAAAGGAGCTTACTAATTTTATAGTTTTCTCGTCGACTTTACTGTCCATGTTGAAGCTGATAGGTATCTCATCCCCTAGGTAATATGCATCTTTTAGCGACTTGAGAAGCCTTGTTAATGAGCCCGCACGGTTTTGTGTGATAATGTTGATTGAAATCCGCATCTTGTTCCAATCTGAAGGGAAAAAAAAGGATGAGAGCTCTGCTATTGCATGGCAAGAGTTTATATCAGGAGAAACTGAGAGAAAAGAGGAAGTATCTTAGCATTCTTACTTGGAAGTGCTGTTGATCGAAGATCGGCCATCCAAAGAACTTTAGAAATCGAAGGCCTTGGTAAAAGAATCACTGTTGTACTACCATTCAAGTTAGCCTCTGATGCCATTTTCAAAGCCTTCTTCACATTAGGATCAACGTCGGCCACAGTGATGACGACGCTGGGATTGTGTATTTTGATTAATCCCTTCATACTGGCATACACTGCCTGCACCACAGGGACCTCAGAATTTGATATTCCAGAGAGAGCCCCAATGGCCAAGTCGAATATCTTGAACCTCCGTTCTTTACAGACCGACTTCGGCCATTTAAGAGCAGCTGCAGCATCTTCACACGGGCAAAAGTTACCGCCAGACACTGCAATATAAGCCTTCTTTCCAACAGTGGATCTGAACTTTTCTAGAAGTGGTGCTAGTGCTTTAGCTTCATCAACAGAATGAGCATAAAATAGAGCATCTATCTTTTGAGGATACATAGCTGCCCATTGTGTGATATAACCAGTAGACATCGCCTTCCACCATTGATCATCCCGAACTTGAACAATGTCCTTAAATATGACAGTGGTCTCGGAAACGTAAGCCAGCCTGTGTTCACTGTCACCCCAAGTTTCCTTGTCTTTTGGGTCTACAGGAAGAACAAATGAGGCAGCATTTCTATACTTTTGAAGCTGATAGCTGCATATTTGGGATTAAAACAATTAGCCACCCAAAACTTAGGAGATGTTGAAATATGAGTAGTGGAAACAGCTAGTAATAAGTTACCTTAGATGGAGATCTTCTCCAGTTGCAAAGGTGAAGGGGGTTTCAATGAAAAGTGTCTTGACAAGCTCAGCGGATAAGAACCAAGAGCTCGAGAGAAAGTCGACCTGCACAATTTTATTGACGGTGATGTCATAAGCAGGATCAGGCAAGTAAAGCCCTGCTTCCTTGGATCGAAACTTCCGATAACTCGGGAATGTGAAATCCTTCTGTCGAAAGGGCAAAATCCTACCTATGCTGCCCAAAACTGCATTCTTGTATTTGTCGGTCCCTGCTACATGAGACAAAATCTGTAGCATTTTACGGCCTGGAATCATGTCATCATCAAGAATATATACTAAATCAGCTTCGGTTTGTAAGGCCATTTGGAACCGTCCATAGTACTTGAAGTCATAGCTTGAGCTAATAAAGCTAATTCTGGAGTTGTTATAGCTATCTACAATTCTTTTCAAAGAGAGCTCATTTGGGCTCCCGAAGGCAAGCACCCAAATATGGTGGAAGGGAAGGGTTTGCTGAAGCAAAGAGTTAAGTTGTGCACACAGAGTTTTCCTCTTAAAATGGTTCAAGATCACTGTAACTTTTGGCTTGTTTGGTCCTCTCAAATCCCACTTGGACTTCATTGCCATTAGCTGAGAAAGAGTCTCAGTTCCAAAGCTTTTGCTTTGAAAATCTAGAATCTCATTGTAAAGCTCTGTTTTCAACTTTATCATCTGCCCATCAGTGGACTTCTTTTGCTCAAAATCAATCTTCTCATTCTCACAAGCTTCCTCCGGAGTAATCGGTCTGAATTCCGCTTGCATCATTAGAGAAGTTGGTTCTTCGATTCGACCCACTACGTGGGGCGGTATTACGAACTGTCTCCATTGTTGAGCGATTCTTGTAGCCCAAGAGAAGTCTGGTTTGGTTCTCAAGTCTATTGCAGGGCTGACATAATACAGTAGAAATGTTGCATATAATGCGAAGGCAAACTGGAGACATGTAAGACCAGCAACAAGCTTTGTTGAAGAATTTCTTTGAGGTCTTAACTTTCCTTTTCCTCCAACATAATCATTGATCATCCCTTCTAAATAATCCCCGTTTTGTGTTGCAGGATTCCGAAAGATACCCATCTTCTTCTCAACGCAACTTCAGGACAATCGCAACCCTGTAGCATAACCGCATATCAGATACGTCCTTTTCATATGATACTGAAAAGACTGATCATCCAGACCAAGCTGAAAGTAATTTTCTTACCTTAAAACTCCCAAATATTGATATGTCGAATTCTGGACAAAAACTATCTTCCACCTGAGAAATCTGTGAACGGATACTGGAATGAGAAAGACTTATCAAGAAAGTTGAGATATGAATAAGAACAGGAACTGGGAGACTTAAAAAAGGAAGAAGCTTTTGGGTTAGTGTATACAATAGGACAGAAAGTGTGTTTGTACATGAAAAACGCACTCAATGTCACATGGGGTTGACGCTTATAATGTTAGAGTTTTTATTACAAACTGTGTCAAAAAAACGTCTTACCCTCGCTGCTTTTTGTCTTGCAATGTTAAACCCCTCAAGGAACCACTTACAAAGCCCCGGATTTGAAGCCTTGTTTTGTGCACTTCTAGACTTTCTCTCTCCTTCTAGAGTCTACTCTCTCCTTCTAGAGTCTACTTTCTCTCTTGAAAGTAATTTATAGAAGATTTTTATAAGAGTGTAACATTACCACCGAAGGTGTTTCAAACATTTTTCCCTGTTTTTTTAGAGTTTAATCGTAAGTGATGTGCGAGGGGATTTAAACTTTTGATCTCTAGAGGGGATTTAAACTTTTGATCTCTTGATTTAGTGTACGGGCTTTATGCCAATTGAACAAATATTCAAGGATATGTGTCTTATACCACTTGTCACAATCGCACTTTTTTTTGGAAACGGACTATGTGATTGTGCGGCACTCACTCCTAACACTAAGTGAGTCAAGCCAATTTGTATTCGTGTCGCTTACAGCCGAGCAACGTATGCTCAACCCTCTAGCCTCATTTGAGAAGAAGGTTTTAGAAAATGAGGTAGAGAGATTTTTGAAAGCGAGTTTGAAAGTAAGAATGAGACCAGATTTAAAAGTAACTAAGCAAAATGCCACAAAACGGCTTAAGTAACATATAACTTTTTGGACAAGGAGAATTTGAGAACTAATTGCATCCTCTTATAGTACATCTTGAGGTGATTCAGGTCTGGTAGGCCTAAACGTGATTTCACCCAACGGTCATACAAAATCAGGGGGTGTGGCAAGATATTTCTAACTTACAACCTTATAAATGAGGTAAAAGTTTATTATTAAAATTTTTAGAGGTAAATGTACTTTTAAGTTGTTAAGTATTGATTTATAGACGTGTAATTATTGAGAATTTTATATCTCTCTAGAAAAGAGTCTTATAGATATCAACCATCTATTTGTAGGTCTCTATTTTTAGAGGTTCAAGCCTACTAACTTAGCCATTCAAAATACTAAAAAGCCTCACCACAATATCCTTTGGTTAGAATTACATGCTAATCTCATAAAACACAAACCCAAATCCCTAAAAAAAGGAAGCTTTTTAGTTCAAAAGTGAAAAACAAAAGGTTAAAAAGAGTGAAAACGCCCTATTTCAAGGCAGATCTGACTGCGAAAGCAACCAAACCATGCAGGGGGGATGTCCATGGCACCATGGGAAAAAGGAATAGTTAAAAGAAAAAGGGCAAACCCAAAAAGACAACAAACAAAGAAGTAAAAAATACTTACAAAAACTTGAAGTGAAAGCAAACGATATCTTCAGCAAACAATCCAAAGCCAAGAAACCCCACAACTTGAAAAACCAGAGGCATCAAATAAAGGCTTAATATAGTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAACAAAGTGTTTGACTTTTTATAGAGATACATAGAAACGTAGAGAAATGAAGTAGCAAGTTCTGGAAAATGGGATTGAGCCAAACTTTAATCTTGGCGGGCTGCTTGAATGCAAAGAATGAAGAAGAAAAAAAACAAGTGTTCATCATGTGGGTTTTCTTTTTGGTTAGGCTGTTTGTGAGTGGAGGATGATGAAGAAAAGTTTTTAGTTTTGAATATAGAAATCCAAGTGTTTGGATGAGATGCATTATCATTATTACATTTAACATATGATGAAATTGGAGCTGCAGCTTGAATGTTTTGAAACCATACAGTATTATGTTCTTACTTTTTGGGGCAAATGCACACTTTCATGGGGTTTCTTTGGACATTCTCTTTCTAAAATCCAACTAAGTTCTTAATCTCTTACCGCTCGTTTACCGCTCGTTTTGATAATGCTTTCGTTTCTTTTACGTTTTATTTTCAGATTTTGAAGAACATATGTGTTTTTTTTGTAGGACAACAAGTTTGAGGATCATCAATTACGGTTGAATTATGCTTACTTTGATAAAAACGATAGGTATTTGAGTACCTATTTCAGGGTTTGAACCTCCAATCTTGAGGGAAGAAGGCTCTTAAAGGTTCAATTTTATCTTTTGTATGTTAAGTTCTTATTCTCGGAGAAATCAAATCATTAGTTTTTAGGAAGGTAGAAAATGTTTGATGATGAAAGTCCCACATCAGCTAATTTAGTAAATGATCATGAGTTTATAATAAAAAAATACTCTCTTCATTGGTGTGAGGCCTTTTGGGAAAGCACAAAACAAAGTCATAAAAACTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATGCCCTAAACTTAGTCATGCCAATAGATTGGTAAATCTTCAAATGTCGAACAAATGACTTCAAAAGAAAAAGGAGTCGAGAGCCTCAATTAAGGAGAGAGGCGTAAATTAAGGTTGAAAAAGCACTTACTAATACTCTTACAATTTTTTTTTTAAAGCTTCAAAAAAA

mRNA sequence

TGGTTGTTTTAGAGTGGCTGTGTTCGATCAGATTCCAACTCCAGTCCTTGAAATTGAATGCTGTTCTTATTAAGACGATCAGATTATATCAACCAAATTATCAACGGAGAGATGAAATTCAGCTAACCTATTACAGAAATGAATCGTTGAAAAGAAGCAAAGAATCATGGAGAACGAATCAGAATTTTGCACAGTGCGAAGGCAGACCAGTCTCATGGTTCACCGCTACAATCTCAGAAACTTCACATTTCAGCACATCTTGCCCTAGCTTGGCTCCGGCGGACTTGAGTCCCTTCAACGACACCGGTTGATTGAAGAGGTTCAGCGATGGAAGTCTCGAAGCCGCCGGTAATTTCCCATTCGGTAAGAAGTTCCCGAAGTTTTCTTTCAATAATGGAACCTCGAAATCTTCCTTCTTGTGCTTCACGATATTGTCCTTTGCACTTATGTGAGCTCCTGGTTCCATGTGGTTCGTTGAAAAACTGGCTTGATTTGGGAAGTTAGGGTATAGACTTACGTAGCCTCTTAAGTACATCATGTCGATTAGGAACTTCTTCCATGATGCTTGCCAACCGTTTGTTCTAGATTTAGGGATCTGAACTGGATTCTCTTTTGCATTTTCCGTGTATCTTGTGTTCATGTAAACATAAAACTCCCTCCAATGTTTGGGGAAGAAAACTGCTCCCCAACTGCAGGGGAGCTGGTGGAGGTAAGGTGTGTTTGGATGAATCCGCTTGAAGAACTCTGTTGCATTCCATTTAGGTCTTTCTTTAACCACTTCGACTAGCCGAGGCGTGTAGAGGGAGATCGATGATAGCTCGGGTAGAGATATTTGTGGATCGTAGTGGTATGCTAGGAGGGCGTATTTGATCCAAAGGTAGTAGTATGGAGAGACTTCAATATCGTCTTCGAGTAGGAGTCCATAATCGTCGTCCGAAGCAGGATACCAACTCTCGCTTACAGCTCGTATCAGCCCTCCTTGGATGATTCTTCTTCTGAGGCTTTTGGGGCCATGAGGCCACTCAAAGGAGCTTACTAATTTTATAGTTTTCTCGTCGACTTTACTGTCCATGTTGAAGCTGATAGGTATCTCATCCCCTAGGTAATATGCATCTTTTAGCGACTTGAGAAGCCTTGTTAATGAGCCCGCACGGTTTTGTGTGATAATGTTGATTGAAATCCGCATCTTGTTCCAATCTGAAGGGAAAAAAAAGGATGAGAGCTCTGCTATTGCATGGCAAGAGTTTATATCAGGAGAAACTGAGAGAAAAGAGGAAGTATCTTAGCATTCTTACTTGGAAGTGCTGTTGATCGAAGATCGGCCATCCAAAGAACTTTAGAAATCGAAGGCCTTGGTAAAAGAATCACTGTTGTACTACCATTCAAGTTAGCCTCTGATGCCATTTTCAAAGCCTTCTTCACATTAGGATCAACGTCGGCCACAGTGATGACGACGCTGGGATTGTGTATTTTGATTAATCCCTTCATACTGGCATACACTGCCTGCACCACAGGGACCTCAGAATTTGATATTCCAGAGAGAGCCCCAATGGCCAAGTCGAATATCTTGAACCTCCGTTCTTTACAGACCGACTTCGGCCATTTAAGAGCAGCTGCAGCATCTTCACACGGGCAAAAGTTACCGCCAGACACTGCAATATAAGCCTTCTTTCCAACAGTGGATCTGAACTTTTCTAGAAGTGGTGCTAGTGCTTTAGCTTCATCAACAGAATGAGCATAAAATAGAGCATCTATCTTTTGAGGATACATAGCTGCCCATTGTGTGATATAACCAGTAGACATCGCCTTCCACCATTGATCATCCCGAACTTGAACAATGTCCTTAAATATGACAGTGGTCTCGGAAACGTAAGCCAGCCTGTGTTCACTGTCACCCCAAGTTTCCTTGTCTTTTGGGTCTACAGGAAGAACAAATGAGGCAGCATTTCTATACTTTTGAAGCTGATAGCTGCATATTTGGGATTAAAACAATTAGCCACCCAAAACTTAGGAGATGTTGAAATATGAGTAGTGGAAACAGCTAGTAATAAGTTACCTTAGATGGAGATCTTCTCCAGTTGCAAAGGTGAAGGGGGTTTCAATGAAAAGTGTCTTGACAAGCTCAGCGGATAAGAACCAAGAGCTCGAGAGAAAGTCGACCTGCACAATTTTATTGACGGTGATGTCATAAGCAGGATCAGGCAAGTAAAGCCCTGCTTCCTTGGATCGAAACTTCCGATAACTCGGGAATGTGAAATCCTTCTGTCGAAAGGGCAAAATCCTACCTATGCTGCCCAAAACTGCATTCTTGTATTTGTCGGTCCCTGCTACATGAGACAAAATCTGTAGCATTTTACGGCCTGGAATCATGTCATCATCAAGAATATATACTAAATCAGCTTCGGTTTGTAAGGCCATTTGGAACCGTCCATAGTACTTGAAGTCATAGCTTGAGCTAATAAAGCTAATTCTGGAGTTGTTATAGCTATCTACAATTCTTTTCAAAGAGAGCTCATTTGGGCTCCCGAAGGCAAGCACCCAAATATGGTGGAAGGGAAGGGTTTGCTGAAGCAAAGAGTTAAGTTGTGCACACAGAGTTTTCCTCTTAAAATGGTTCAAGATCACTGTAACTTTTGGCTTGTTTGGTCCTCTCAAATCCCACTTGGACTTCATTGCCATTAGCTGAGAAAGAGTCTCAGTTCCAAAGCTTTTGCTTTGAAAATCTAGAATCTCATTGTAAAGCTCTGTTTTCAACTTTATCATCTGCCCATCAGTGGACTTCTTTTGCTCAAAATCAATCTTCTCATTCTCACAAGCTTCCTCCGGAGTAATCGGTCTGAATTCCGCTTGCATCATTAGAGAAGTTGGTTCTTCGATTCGACCCACTACGTGGGGCGGTATTACGAACTGTCTCCATTGTTGAGCGATTCTTGTAGCCCAAGAGAAGTCTGGTTTGGTTCTCAAGTCTATTGCAGGGCTGACATAATACAGTAGAAATGTTGCATATAATGCGAAGGCAAACTGGAGACATGATTCCGAAAGATACCCATCTTCTTCTCAACGCAACTTCAGGACAATCGCAACCCTGTAGCATAACCGCATATCAGATACGTCCTTTTCATATGATACTGAAAAGACTGATCATCCAGACCAAGCTGAAAGACAACAAGTTTGAGGATCATCAATTACGGTTGAATTATGCTTACTTTGATAAAAACGATAGGTATTTGAGTACCTATTTCAGGGTTTGAACCTCCAATCTTGAGGGAAGAAGGCTCTTAAAGGTTCAATTTTATCTTTTGTATGTTAAGTTCTTATTCTCGGAGAAATCAAATCATTAGTTTTTAGGAAGGTAGAAAATGTTTGATGATGAAAGTCCCACATCAGCTAATTTAGTAAATGATCATGAGTTTATAATAAAAAAATACTCTCTTCATTGGTGTGAGGCCTTTTGGGAAAGCACAAAACAAAGTCATAAAAACTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATGCCCTAAACTTAGTCATGCCAATAGATTGGTAAATCTTCAAATGTCGAACAAATGACTTCAAAAGAAAAAGGAGTCGAGAGCCTCAATTAAGGAGAGAGGCGTAAATTAAGGTTGAAAAAGCACTTACTAATACTCTTACAATTTTTTTTTTAAAGCTTCAAAAAAA

Coding sequence (CDS)

ATGTTGCATATAATGCGAAGGCAAACTGGAGACATGATTCCGAAAGATACCCATCTTCTTCTCAACGCAACTTCAGGACAATCGCAACCCTGTAGCATAACCGCATATCAGATACGTCCTTTTCATATGATACTGAAAAGACTGATCATCCAGACCAAGCTGAAAGACAACAAGTTTGAGGATCATCAATTACGGTTGAATTATGCTTACTTTGATAAAAACGATAGGTATTTGAGTACCTATTTCAGGGTTTGA

Protein sequence

MLHIMRRQTGDMIPKDTHLLLNATSGQSQPCSITAYQIRPFHMILKRLIIQTKLKDNKFEDHQLRLNYAYFDKNDRYLSTYFRV
Homology
BLAST of CmaCh13G002490.1 vs. NCBI nr
Match: KAG6583576.1 (hypothetical protein SDJN03_19508, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1  MLHIMRRQTGDMIPKDTHLLLNATSGQSQPCSITAYQIRPFHMILKRLIIQTKLK 56
          MLHIMRRQTGDMIPKDTHLLLNATS QSQPCS TAYQIRPFHMILKRLIIQT+LK
Sbjct: 1  MLHIMRRQTGDMIPKDTHLLLNATSEQSQPCSKTAYQIRPFHMILKRLIIQTELK 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583576.11.3e-1994.55hypothetical protein SDJN03_19508, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh13G002490CmaCh13G002490gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G002490.1:exon:331CmaCh13G002490.1:exon:331exon
CmaCh13G002490.1:exon:330CmaCh13G002490.1:exon:330exon
CmaCh13G002490.1:exon:329CmaCh13G002490.1:exon:329exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G002490.1:three_prime_utrCmaCh13G002490.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G002490.1:cdsCmaCh13G002490.1:cds_3CDS
CmaCh13G002490.1:cdsCmaCh13G002490.1:cds_2CDS
CmaCh13G002490.1:cdsCmaCh13G002490.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G002490.1:five_prime_utrCmaCh13G002490.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh13G002490.1CmaCh13G002490.1-proteinpolypeptide