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Overview
| Name | CmaCh12G007900.1 |
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| Type | mRNA |
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| Organism | Cucurbita maxima (Cucurbita maxima (Rimu) v1.1) |
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| Description | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein . |
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| Location | Cma_Chr12: 5508548 .. 5509026 (-) |
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| Sequence length | 387 |
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| RNA-Seq Expression | CmaCh12G007900.1 |
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| Synteny | CmaCh12G007900.1 |
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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGCTTTCCTTCTGAAAATCCAATATCCGAAACCCCCAATTTTGTTTCTACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAATTCACAGAATTCAGTCGGAAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGCTTCCTCCGCTAGAAATGTTTCCGTTTCATCGGCGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGCTGCTTTGCTTCTTTAGATTCATCTTCTTGTTTTGATGTTACTTTTTTTTTTTTCTCTCTTAAATTTCATTCTGATGCGATTTTTTAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAA mRNA sequence ATGGGCTTTCCTTCTGAAAATCCAATATCCGAAACCCCCAATTTTGTTTCTACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAATTCACAGAATTCAGTCGGAAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGCTTCCTCCGCTAGAAATGTTTCCGTTTCATCGGCGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAA Coding sequence (CDS) ATGGGCTTTCCTTCTGAAAATCCAATATCCGAAACCCCCAATTTTGTTTCTACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAATTCACAGAATTCAGTCGGAAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGCTTCCTCCGCTAGAAATGTTTCCGTTTCATCGGCGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAA Protein sequence MGFPSENPISETPNFVSTSFPVTGDFGEVLGFVIHRIQSEMAASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQG
Homology
BLAST of CmaCh12G007900.1 vs. TAIR 10
Match: AT2G27775.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05 Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0
Query: 42 AASVALRSSC-LRAISRISTASSARNVSVSSALPSV-RSSFVSRRISISPH----SLRLL 101
A +A RS+ +R+I+R +T ARN+ S A PSV +F S R + S RLL
Sbjct: 3 AIGIASRSATFMRSINRTAT---ARNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62
Query: 102 RRELSSLRPIHSAIASACLVSELPAEASA 125
RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63 RRELSTQQPFHSTIAAACLVSKLPSDVTS 88
BLAST of CmaCh12G007900.1 vs. TAIR 10
Match: AT2G27775.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05 Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0
Query: 42 AASVALRSSC-LRAISRISTASSARNVSVSSALPSV-RSSFVSRRISISPH----SLRLL 101
A +A RS+ +R+I+R +T ARN+ S A PSV +F S R + S RLL
Sbjct: 3 AIGIASRSATFMRSINRTAT---ARNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62
Query: 102 RRELSSLRPIHSAIASACLVSELPAEASA 125
RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63 RRELSTQQPFHSTIAAACLVSKLPSDVTS 88
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| AT2G27775.1 | 3.0e-05 | 44.94 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... | [more] |
| AT2G27775.2 | 3.0e-05 | 44.94 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| CmaCh12G007900.1:exon:589 | CmaCh12G007900.1:exon:589 | exon |
| CmaCh12G007900.1:exon:588 | CmaCh12G007900.1:exon:588 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| CmaCh12G007900.1:cds | CmaCh12G007900.1:cds_2 | CDS |
| CmaCh12G007900.1:cds | CmaCh12G007900.1:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
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| CmaCh12G007900.1 | CmaCh12G007900.1-protein | polypeptide |
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