CmaCh12G007900 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G007900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein .
LocationCma_Chr12: 5508548 .. 5509026 (-)
RNA-Seq ExpressionCmaCh12G007900
SyntenyCmaCh12G007900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTTCCTTCTGAAAATCCAATATCCGAAACCCCCAATTTTGTTTCTACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAATTCACAGAATTCAGTCGGAAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGCTTCCTCCGCTAGAAATGTTTCCGTTTCATCGGCGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGCTGCTTTGCTTCTTTAGATTCATCTTCTTGTTTTGATGTTACTTTTTTTTTTTTCTCTCTTAAATTTCATTCTGATGCGATTTTTTAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAA

mRNA sequence

ATGGGCTTTCCTTCTGAAAATCCAATATCCGAAACCCCCAATTTTGTTTCTACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAATTCACAGAATTCAGTCGGAAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGCTTCCTCCGCTAGAAATGTTTCCGTTTCATCGGCGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAA

Coding sequence (CDS)

ATGGGCTTTCCTTCTGAAAATCCAATATCCGAAACCCCCAATTTTGTTTCTACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAATTCACAGAATTCAGTCGGAAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGCTTCCTCCGCTAGAAATGTTTCCGTTTCATCGGCGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAA

Protein sequence

MGFPSENPISETPNFVSTSFPVTGDFGEVLGFVIHRIQSEMAASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQG
Homology
[Close]
BLAST of CmaCh12G007900 vs. TAIR 10
Match: AT2G27775.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 42  AASVALRSSC-LRAISRISTASSARNVSVSSALPSV-RSSFVSRRISISPH----SLRLL 101
           A  +A RS+  +R+I+R +T   ARN+  S A PSV   +F S R + S        RLL
Sbjct: 3   AIGIASRSATFMRSINRTAT---ARNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62

Query: 102 RRELSSLRPIHSAIASACLVSELPAEASA 125
           RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63  RRELSTQQPFHSTIAAACLVSKLPSDVTS 88

[Close]
BLAST of CmaCh12G007900 vs. TAIR 10
Match: AT2G27775.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 42  AASVALRSSC-LRAISRISTASSARNVSVSSALPSV-RSSFVSRRISISPH----SLRLL 101
           A  +A RS+  +R+I+R +T   ARN+  S A PSV   +F S R + S        RLL
Sbjct: 3   AIGIASRSATFMRSINRTAT---ARNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62

Query: 102 RRELSSLRPIHSAIASACLVSELPAEASA 125
           RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63  RRELSTQQPFHSTIAAACLVSKLPSDVTS 88

The following BLAST results are available for this feature:
BLAST of CmaCh12G007900 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G007900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27775.13.0e-0544.94FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G27775.23.0e-0544.94FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007900.1CmaCh12G007900.1mRNA