CmaCh11G016400.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTCCACTTTCCATCTCTTTTTCTTCCCTAGAAATGGCCACCGCCAAGCTTTCTATCTCTCTTTTCGCTCTTTTCTCTCTGGTCGTGAATTACTCCACCGCATACGGCGCCCTAGTGCCGGAGAGGGACTGTTCCAAACTCATCATCACCTTGGCCGACTGCCTCCCCTTCGTCTCCAAAGACAGCACCACCACCACTCCCGCTAAAGCCTGCTGTGTCGGCCTTAAAATCGTCGCCAAGGCTAACGCCGATTGCCTCTGCCATACCTTCAAGAACAGCGCTTCATTCGGTATCGTCCTCAATGTCACCAAGGCTCTTTCTCTCCCTGCCGCTTGCGACATATCCGATCCTGCTCTTTCTGACTGTAAATGTAAGCCTAATTTCTCCAAAATCGCTCTCTTAATTTCCGATTCAGTAAAACCCTAGAAAACCTAACTGATCTGTTTTTGTGAAATCGCTGTTTCCTTTTGATTTCCAGTGTCGACTTCTCCTATTGGCTCTCCTGGTACTGTTTCTTCTCTGAAACGATTTTCGATTAGTCTTACTCTGTTGATTTCGATCTGGATTTTGGAATGTTTGTGATAAAATTCCTGAGCGTTTGTTCTGTTTCGATTGTTGTTTTAATGCAGCGGTTACGCCGGCTGCCTCACCTAAATTGTCGCCGGGAGAAGCGCCAGTGAAGAACGAGACGACGCCGGCTCCGACACCTGAAAATTCGGCGGCGACAGGCGTTATGGTGTCCGTCGGATCCATAATCGCCGCCATTGGAGTAGGTGTGTTCTACAGTTTTTGAGTGGAAAGCGTTTGAAAAATTTGGGGGAATTTGAAAATTGTTTTAGTGTTTATTCGCGGAAGGGAGTTTGTTAGGACTGTTGGATTTTGTTGTTTCTTTTGTGGCAAGGTGTTCT TTCTCCACTTTCCATCTCTTTTTCTTCCCTAGAAATGGCCACCGCCAAGCTTTCTATCTCTCTTTTCGCTCTTTTCTCTCTGGTCGTGAATTACTCCACCGCATACGGCGCCCTAGTGCCGGAGAGGGACTGTTCCAAACTCATCATCACCTTGGCCGACTGCCTCCCCTTCGTCTCCAAAGACAGCACCACCACCACTCCCGCTAAAGCCTGCTGTGTCGGCCTTAAAATCGTCGCCAAGGCTAACGCCGATTGCCTCTGCCATACCTTCAAGAACAGCGCTTCATTCGGTATCGTCCTCAATGTCACCAAGGCTCTTTCTCTCCCTGCCGCTTGCGACATATCCGATCCTGCTCTTTCTGACTGTAAATTGTCGACTTCTCCTATTGGCTCTCCTGCGGTTACGCCGGCTGCCTCACCTAAATTGTCGCCGGGAGAAGCGCCAGTGAAGAACGAGACGACGCCGGCTCCGACACCTGAAAATTCGGCGGCGACAGGCGTTATGGTGTCCGTCGGATCCATAATCGCCGCCATTGGAGTAGGTGTGTTCTACAGTTTTTGAGTGGAAAGCGTTTGAAAAATTTGGGGGAATTTGAAAATTGTTTTAGTGTTTATTCGCGGAAGGGAGTTTGTTAGGACTGTTGGATTTTGTTGTTTCTTTTGTGGCAAGGTGTTCT ATGGCCACCGCCAAGCTTTCTATCTCTCTTTTCGCTCTTTTCTCTCTGGTCGTGAATTACTCCACCGCATACGGCGCCCTAGTGCCGGAGAGGGACTGTTCCAAACTCATCATCACCTTGGCCGACTGCCTCCCCTTCGTCTCCAAAGACAGCACCACCACCACTCCCGCTAAAGCCTGCTGTGTCGGCCTTAAAATCGTCGCCAAGGCTAACGCCGATTGCCTCTGCCATACCTTCAAGAACAGCGCTTCATTCGGTATCGTCCTCAATGTCACCAAGGCTCTTTCTCTCCCTGCCGCTTGCGACATATCCGATCCTGCTCTTTCTGACTGTAAATTGTCGACTTCTCCTATTGGCTCTCCTGCGGTTACGCCGGCTGCCTCACCTAAATTGTCGCCGGGAGAAGCGCCAGTGAAGAACGAGACGACGCCGGCTCCGACACCTGAAAATTCGGCGGCGACAGGCGTTATGGTGTCCGTCGGATCCATAATCGCCGCCATTGGAGTAGGTGTGTTCTACAGTTTTTGA MATAKLSISLFALFSLVVNYSTAYGALVPERDCSKLIITLADCLPFVSKDSTTTTPAKACCVGLKIVAKANADCLCHTFKNSASFGIVLNVTKALSLPAACDISDPALSDCKLSTSPIGSPAVTPAASPKLSPGEAPVKNETTPAPTPENSAATGVMVSVGSIIAAIGVGVFYSF Homology
BLAST of CmaCh11G016400.1 vs. ExPASy Swiss-Prot
Match: Q8VYI9 (Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3702 GN=LTPG31 PE=2 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 6.1e-22 Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy Swiss-Prot
Match: Q9ZQI8 (Non-specific lipid transfer protein GPI-anchored 11 OS=Arabidopsis thaliana OX=3702 GN=LTPG11 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 3.7e-19 Identity = 66/173 (38.15%), Postives = 95/173 (54.91%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy Swiss-Prot
Match: Q2PE60 (Non-specific lipid transfer protein GPI-anchored 23 OS=Arabidopsis thaliana OX=3702 GN=LTPG23 PE=2 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14 Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy Swiss-Prot
Match: Q9FY78 (Non-specific lipid transfer protein GPI-anchored 29 OS=Arabidopsis thaliana OX=3702 GN=LTPG29 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12 Identity = 57/162 (35.19%), Postives = 81/162 (50.00%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy Swiss-Prot
Match: Q2PE70 (Non-specific lipid transfer protein GPI-anchored 4 OS=Arabidopsis thaliana OX=3702 GN=LTPG4 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10 Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy TrEMBL
Match: A0A6J1JIP6 (non-specific lipid-transfer protein-like protein At5g64080 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486172 PE=3 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy TrEMBL
Match: A0A6J1JEH5 (non-specific lipid-transfer protein-like protein At5g64080 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486172 PE=3 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 9.0e-85 Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy TrEMBL
Match: A0A6J1EIQ5 (non-specific lipid-transfer protein-like protein At5g64080 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434631 PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82 Identity = 166/175 (94.86%), Postives = 171/175 (97.71%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy TrEMBL
Match: A0A6J1EM83 (non-specific lipid-transfer protein-like protein At5g64080 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434631 PE=3 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 3.0e-80 Identity = 165/175 (94.29%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. ExPASy TrEMBL
Match: A0A6J1HGE8 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita moschata OX=3662 GN=LOC111464062 PE=3 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 4.8e-46 Identity = 113/178 (63.48%), Postives = 128/178 (71.91%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. NCBI nr
Match: XP_022988971.1 (non-specific lipid-transfer protein-like protein At5g64080 isoform X1 [Cucurbita maxima]) HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. NCBI nr
Match: XP_022988972.1 (non-specific lipid-transfer protein-like protein At5g64080 isoform X2 [Cucurbita maxima]) HSP 1 Score: 322.8 bits (826), Expect = 1.9e-84 Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. NCBI nr
Match: XP_022927861.1 (non-specific lipid-transfer protein-like protein At5g64080 isoform X1 [Cucurbita moschata] >KAG6588780.1 Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 313.9 bits (803), Expect = 8.6e-82 Identity = 166/175 (94.86%), Postives = 171/175 (97.71%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. NCBI nr
Match: XP_023531692.1 (non-specific lipid-transfer protein-like protein At5g64080 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 308.5 bits (789), Expect = 3.6e-80 Identity = 162/175 (92.57%), Postives = 168/175 (96.00%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. NCBI nr
Match: XP_022927863.1 (non-specific lipid-transfer protein-like protein At5g64080 isoform X2 [Cucurbita moschata]) HSP 1 Score: 307.8 bits (787), Expect = 6.2e-80 Identity = 165/175 (94.29%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. TAIR 10
Match: AT5G64080.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 105.5 bits (262), Expect = 4.3e-23 Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. TAIR 10
Match: AT5G64080.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 102.1 bits (253), Expect = 4.8e-22 Identity = 64/169 (37.87%), Postives = 97/169 (57.40%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. TAIR 10
Match: AT2G13820.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 96.3 bits (238), Expect = 2.6e-20 Identity = 66/173 (38.15%), Postives = 95/173 (54.91%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. TAIR 10
Match: AT2G13820.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17 Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 0
BLAST of CmaCh11G016400.1 vs. TAIR 10
Match: AT1G36150.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15 Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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