CmaCh08G005410.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005410.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr08: 3115447 .. 3116541 (+)
Sequence length	333
RNA-Seq Expression	CmaCh08G005410.1
Synteny	CmaCh08G005410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTCTTTAAGCTTTTATTTTTTCTGTTATTTAATCGAATTTCGGACTGAAAATTTTCCTTCTATATTCACGTGAACAGGGAAGAGGCTCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGACCAATTTCAATCCAATCGCTCCTCAAATTCATCAACAGATCTTCCATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGGTAAGTTAATGATTTGTTTTGATCGGTTAAAGAATATTAGTTACTTGCTCTTCGTCGTTTTGGATACTGTATTTGCTTGTGTTTTCACTTTTGATTGGGATTGTTCTTCGCGGGCTATTAGGATCAGGAGCTAGGGTTTTGTTTCTTATTCGATATGGTTTCGCTTTTATTACGCGGATGTTTATGTGCTCGTTTTTCCTTGTTGCTCAACGTTTTGATATGCGGTCTAGTGATTTTTACCTGCGTCATCAAAATTACGGAAATATTGGAGTGTGGTATTTGTTAATCGTCGTCTGGAGCCTGGTCGTTGTAGTTGTTATTTTTATTTAATATTGGCCGTTTTGATTTGGTCGGTTAACTGTTTTGAGGTTTTGATCGATATTTGATTTTGACAAAGACACTTGCATTAGCAGCTCGGTGTAAGAGATTTTTGTGGACTATTGGTTAAATTAGTTCGTCCATGTGAGCTTTTTGTTATTGTCTTGCTACAAGTTGGCACTGTTTTTGTGTCTTCGTGGTCTATCAGTGTAAGGTACCCAAAAAATTTAGGGTCTGCTGAACTGTGCTTATATATATATATATATATATATATATATATATATCTTCTTTTTTATCTATATAAATGCGGAATTAACGATGTTATGTTTAACTAGTGCAAAAGTTGGTGGGTGTTTGAATGGAGAAGATTTCCATTTATCCTTTGGGATATCCCACTTTTTTCTGGATGATTTGAACGTTAATTTTTTTCTTTCAGGGTTTGTCTGCTAAATTCAGTTTTCTACTTTTACCTCCTTGTTTAA

mRNA sequence

ATGCGTTCTTTAAGCTTTTATTTTTTCTGTTATTTAATCGAATTTCGGACTGAAAATTTTCCTTCTATATTCACGGAAGAGGCTCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGACCAATTTCAATCCAATCGCTCCTCAAATTCATCAACAGATCTTCCATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGGGTTTGTCTGCTAAATTCAGTTTTCTACTTTTACCTCCTTGTTTAA

Coding sequence (CDS)

ATGCGTTCTTTAAGCTTTTATTTTTTCTGTTATTTAATCGAATTTCGGACTGAAAATTTTCCTTCTATATTCACGGAAGAGGCTCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGACCAATTTCAATCCAATCGCTCCTCAAATTCATCAACAGATCTTCCATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGGGTTTGTCTGCTAAATTCAGTTTTCTACTTTTACCTCCTTGTTTAA

Protein sequence

MRSLSFYFFCYLIEFRTENFPSIFTEEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLPSGLAESDRRRVSQSKRKISILRFKVVLRAFGVCLLNSVFYFYLLV

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh08G005410.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh08G005410.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh08G005410	CmaCh08G005410	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G005410.1:exon:786	CmaCh08G005410.1:exon:786	exon
CmaCh08G005410.1:exon:785	CmaCh08G005410.1:exon:785	exon
CmaCh08G005410.1:exon:784	CmaCh08G005410.1:exon:784	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G005410.1:cds	CmaCh08G005410.1:cds	CDS
CmaCh08G005410.1:cds	CmaCh08G005410.1:cds_2	CDS
CmaCh08G005410.1:cds	CmaCh08G005410.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh08G005410.1	CmaCh08G005410.1-protein	polypeptide