CmaCh04G009430.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G009430.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 4849110 .. 4849716 (+)
Sequence length	438
RNA-Seq Expression	CmaCh04G009430.1
Synteny	CmaCh04G009430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCATCTCCAAAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGCTGGACTTCCTCCATGGACGACCTTCTCTTATTCGACTACTCTAAAACAACTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGATGACGATGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACATTACATTCTCAGCTATATAAATCATCATCCAAAACTTCTGTTTACATCTTTTAAAAACTGGGTTTTTTTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCACACTGCCATGATCAATCAAACAAAACACAGGGTTTGTAATTTTTGAGTGTTTTTATATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTGGGGTTCTGGTTTTGTAGGGAAAAGAAATTGAGGAATTTGGGGAGGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCAGCCATCTCCAAAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGCTGGACTTCCTCCATGGACGACCTTCTCTTATTCGACTACTCTAAAACAACTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGATGACGATGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCACACTGCCATGATCAATCAAACAAAACACAGGGGAAAAGAAATTGAGGAATTTGGGGAGGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCATCTCCAAAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGCTGGACTTCCTCCATGGACGACCTTCTCTTATTCGACTACTCTAAAACAACTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGATGACGATGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCACACTGCCATGATCAATCAAACAAAACACAGGGGAAAAGAAATTGAGGAATTTGGGGAGGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Protein sequence

MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

Homology

[Close]

BLAST of CmaCh04G009430.1 vs. ExPASy TrEMBL
Match: A0A6J1JN91 (uncharacterized protein LOC111486825 OS=Cucurbita maxima OX=3661 GN=LOC111486825 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.0e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60
           MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT
Sbjct: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRD 120
           ATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRD
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRD 120

Query: 121 NNCSTGLKNIGLCLVPVSMAINYFG 146
           NNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 NNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmaCh04G009430.1 vs. ExPASy TrEMBL
Match: A0A6J1FU25 (uncharacterized protein LOC111446888 OS=Cucurbita moschata OX=3662 GN=LOC111446888 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-67
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60
           MENSAIS+ICTQKQVDQDHSSWTSSMDDLLLFD+SKT SYHFQNAAVFSSS DDDDLQDT
Sbjct: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSS-DDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQ-QQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGR 120
           ATSPPHPSIISDMDGLSSKQKKQ QQQQ +AMINQTKH+GKEIEEFGEVEDRIEVGFVGR
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGR 120

Query: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 146
           DNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmaCh04G009430.1 vs. ExPASy TrEMBL
Match: A0A0A0L2F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.5e-34
Identity = 100/179 (55.87%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 1   MENSAISKICTQKQVD------QDHSSW--TSSMDDLLLFDYSKTT---SYH-FQNAAVF 60
           MENSA S+IC+ ++ D       +  SW  +SSMDDLL+FD   TT   SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSSDD-------------------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           SS+ D                   DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           AM+NQTKH+G   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmaCh04G009430.1 vs. ExPASy TrEMBL
Match: A0A5D3BKS2 (Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00160 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.6e-32
Identity = 98/179 (54.75%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQ------DHSSW--TSSMDDLLLFDYSKT---TSYH-FQNAAVF 60
           MENSA S+IC+  + D+      +  SW  +SSMDDLL+FD   T   +SY  FQ     
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SSSDD-------------------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           SS+ D                   DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           A INQTKH+GK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmaCh04G009430.1 vs. ExPASy TrEMBL
Match: A0A1S3CKU1 (uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.6e-32
Identity = 98/179 (54.75%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQ------DHSSW--TSSMDDLLLFDYSKT---TSYH-FQNAAVF 60
           MENSA S+IC+  + D+      +  SW  +SSMDDLL+FD   T   +SY  FQ     
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SSSDD-------------------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           SS+ D                   DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           A INQTKH+GK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmaCh04G009430.1 vs. NCBI nr
Match: XP_022989755.1 (uncharacterized protein LOC111486825 [Cucurbita maxima])

HSP 1 Score: 288.1 bits (736), Expect = 4.2e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60
           MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT
Sbjct: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRD 120
           ATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRD
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRD 120

Query: 121 NNCSTGLKNIGLCLVPVSMAINYFG 146
           NNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 NNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmaCh04G009430.1 vs. NCBI nr
Match: XP_022941575.1 (uncharacterized protein LOC111446888 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 5.0e-67
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60
           MENSAIS+ICTQKQVDQDHSSWTSSMDDLLLFD+SKT SYHFQNAAVFSSS DDDDLQDT
Sbjct: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSS-DDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQ-QQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGR 120
           ATSPPHPSIISDMDGLSSKQKKQ QQQQ +AMINQTKH+GKEIEEFGEVEDRIEVGFVGR
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGR 120

Query: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 146
           DNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmaCh04G009430.1 vs. NCBI nr
Match: KAG7031402.1 (hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 136/146 (93.15%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60
           MENSAIS+ICTQKQVD+DHSSWTSSMDDLLLFD+SKT SYH QNAAVFSSS DDDDLQDT
Sbjct: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSS-DDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQH-TAMINQTKHRGKEIEEFGEVEDRIEVGFVGR 120
           ATSPPHPSIISDMDGLSSKQKKQQQQQ  +AMINQTKH+GKEIEEFGEVEDRIEVGFVGR
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGR 120

Query: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 146
           DNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmaCh04G009430.1 vs. NCBI nr
Match: KAG6600765.1 (hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261.5 bits (667), Expect = 4.2e-66
Identity = 136/148 (91.89%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60
           MENSAIS+ICTQKQVD+DHSSWTSSMDDLLLFD+SKT SYH QNAAVFSSS DDDDLQDT
Sbjct: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSS-DDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQH---TAMINQTKHRGKEIEEFGEVEDRIEVGFV 120
           ATSPPHPSIISDMDGLSSKQKKQQQQQ    +AMINQTKH+GKEIEEFGEVEDRIEVGFV
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFV 120

Query: 121 GRDNNCSTGLKNIGLCLVPVSMAINYFG 146
           GRDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 GRDNNCSTGLKNIGLCLVPVSMAINYFG 147

[Close]

BLAST of CmaCh04G009430.1 vs. NCBI nr
Match: XP_011652737.2 (uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical protein Csa_009500 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.2e-34
Identity = 100/179 (55.87%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 1   MENSAISKICTQKQVD------QDHSSW--TSSMDDLLLFDYSKTT---SYH-FQNAAVF 60
           MENSA S+IC+ ++ D       +  SW  +SSMDDLL+FD   TT   SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSSDD-------------------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           SS+ D                   DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           AM+NQTKH+G   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

The following BLAST results are available for this feature:

BLAST of CmaCh04G009430.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G009430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN91	2.0e-74	100.00	uncharacterized protein LOC111486825 OS=Cucurbita maxima OX=3661 GN=LOC111486825...	[more]
A0A6J1FU25	2.4e-67	94.52	uncharacterized protein LOC111446888 OS=Cucurbita moschata OX=3662 GN=LOC1114468...	[more]
A0A0A0L2F7	3.5e-34	55.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1	[more]
A0A5D3BKS2	5.6e-32	54.75	Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CKU1	5.6e-32	54.75	uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=...	[more]

BLAST of CmaCh04G009430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989755.1	4.2e-74	100.00	uncharacterized protein LOC111486825 [Cucurbita maxima]	[more]
XP_022941575.1	5.0e-67	94.52	uncharacterized protein LOC111446888 [Cucurbita moschata]	[more]
KAG7031402.1	2.5e-66	93.15	hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600765.1	4.2e-66	91.89	hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011652737.2	7.2e-34	55.87	uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical ...	[more]

BLAST of CmaCh04G009430.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..103
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 52..145
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 52..145

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G009430	CmaCh04G009430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G009430.1:exon:489	CmaCh04G009430.1:exon:489	exon
CmaCh04G009430.1:exon:490	CmaCh04G009430.1:exon:490	exon
CmaCh04G009430.1:exon:491	CmaCh04G009430.1:exon:491	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G009430.1:cds	CmaCh04G009430.1:cds	CDS
CmaCh04G009430.1:cds	CmaCh04G009430.1:cds_2	CDS
CmaCh04G009430.1:cds	CmaCh04G009430.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G009430.1	CmaCh04G009430.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development