Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAACTCCATCACAAGACGTGGAGATGGGTACAGAAGCAGAGCTGCACGCCCATCAACCACTTTATTTTTGGAATTACTTGTTGATAATCCATGGATTTTAGGGAGGAAAAATAGGGAGAAAAATAAAGATGAAAATCAGTTGGGGAAAAAAAAAAGAAGGGATTTTTTCAAAGATGAAAGAGAGTGATCCTGGAGAAAAGCCAGCACCGATTCCAACCCCACGAGAAGAGAGGAAGAGAAGGAGAGGGAAGCAAAAAAAAGGAGGAGGAGCAGAATAATAAGGCCAACAACAGGGCGCCCTCTCTCTCCCTCTTGGACTCATTCGTTTCAATCGCATCTCTCTCTCTCTCTCCCTTCATTTACTTTCTTTTTTATAACAGAGGAGAGAGGCAGAGAGATTTTGAATTACCCAAACAATGGAGAAAGTTTAGACATAGATAAGAGATTGGAAAGAAAAGCATTATAAAACAAAGAAAGGAAGAAAAGGAAAAGGGAAAGATGGTGAGGAGAAGGGGAAAAATGGTGGTGGTGAAGGTGAAAGTGGTGGTGCCCTCTTACCAGACATAAATTCATTTCCCTACGAACTCCATTCTCTCTCTCTCTCTCCCTCTCTCCTATTCAACACTCCGTCTACTCCTAAGACTTGAGAGGGTGGGAAGAACAGCATCTTCCTTGTCTTTCATGCTTCCCTTATGCTTCCTTTTATTATTGCCATCCTTCATTCCCAATCTTCTTCACGTTGCTCCATAAACACACCCACCACCACCGCCTTCTTTTTTTAACTTCCCTTACTTTTTCTTCTTCTTCATCTTCTCCAAACCTTTCTTCTATCCATCGATTCCTTCTTTGTTTCTCCCCTATGGCTGTTCAGGCTCAATATCCTTCTAATGTTTTGCTCTTAAACAGGTATATACGGATGATTCTGTTTTTCTCTTCTATGCCAATTCTTGATTTGAGGTTTTTCAAATCCCTCATGCTTGGGTTTTGGATTTTGGTTTGCTAATTGCAGAAACGGTCAAGAAGGGCATGATTATCCATTACAGCCACAACCAGGAGGTTTTCTTGACCAGACTCATATGGTGTTTAACAACAGTACAGGCGGTGAGATTTTTGCACATTGTTTTAGGCTGAAATTATTCTTCTGTTAGAACGCCAGAAGTATTTCAATCAATTTGAGTTCGTACCTTTCAATAAATCAATCAATCCGGTTTCTGATGAAAGCAGGAAACAATTCTCGCAAAAGAGGAAGAGAAATTTCAACTGCCATTACGTCCATCGCGGCTCCGATCAATTTCGCTGCGGTACAGCAACCTCGTCCTCCTCTCCTTGTTGACCTCGCCAAACTCCACAACCACCAAAACAATGTCGTCTCCACTGGCCTCCGCCTGTCCTCCGGCGACCATCAACTGAATCAACCGCCGCAACAGCAACATCATCAACAACAGCAACATCATCAACAACAGCAACATCATCAACAACAGCAACATCAACATAATCACAATCTCGTCCCTCAATCATCATCGGCTTTCTTCTCGCTATTATCAGACGATTTCGCCTCTAATTTCAAACGGCAACAAGACGAAATAGATCAATTCCTTCAAGCACAGGTCTCAACTCACTCCATAACGCAGAAACAAATTTCATCTCGAGAGAACTTTTTCTGAATCAGTTTCGTTTTCCATTTCAAAAACAGGAAGAGCAACTGCGGCGCACATTAGCAGAGAAAAGACAGAGACACTACCGTGCGCTTCTGGATGCGGTGGAGAAATCGGTATTCAGAAGATTAAGAGAGAGGGAGGCGGAGGTGGAAAAGGCAACTCGTCGAAACGCCGAGTTAGAAGCACGAGCCGCCCAGCTTAGCATCGAGGCGCAAGTCTGGCAAGCCAAAGCTAGGGCACAAGAAGCCACCGCCGTATCTTTGCAGGCACAACTGCAACGAGCGATGTCCATCGGCGGCGGAGGTGGAGGCGGAGGCGACGGAGGAGATGGCGGCACCGCCGATGATGCCGAGTCGGCTCACATTGACCCGGACCGAGTCGCTATTTTGGGACCGAGTTGCAGAGAGTGTAGAAAGCGCTTGGCGTCGGTGGTGCTTTTGCCGTGCCGTCATCTCTGCCTCTGTACAGACTGTGATCGAGTGGCTCAGACTTGCCCGTTGTGCCACATTCAGCGAAGCTCCAGCGTAGAGGTCTATCTCTCGTAGGGCCCAATCCCACGGCCCAATGCGGGTTACGCCCATAAACCGGCCCAGACAGTTCAATTGGCGGTTTTTTTCCTTCTTTTTTCCTTAAAATTTTAAAAAAAGTATTTAAGTAATAAAAGAATTACATTACCTTTTTTCATTATTATTTTTCGAAATATTCTGATAGACCATCCGAAACTTTTTTTTTTCCTTCTTTTTGCTTTTTTCTTTTTTGGAATGCCCGTGGAGGTAATGTAAATTGGCCACATTGCGGATTTTCCTTTCTTTTTTTTCTTTTTTTTTTTTAAATTTTAATTTTTATGGAATTTCATTCATTCATCTCCTAAATTATTTATTCAAAAAACTTCTTCAA
mRNA sequence
ACAACTCCATCACAAGACGTGGAGATGGGTACAGAAGCAGAGCTGCACGCCCATCAACCACTTTATTTTTGGAATTACTTGTTGATAATCCATGGATTTTAGGGAGGAAAAATAGGGAGAAAAATAAAGATGAAAATCAGTTGGGGAAAAAAAAAAGAAGGGATTTTTTCAAAGATGAAAGAGAGTGATCCTGGAGAAAAGCCAGCACCGATTCCAACCCCACGAGAAGAGAGGAAGAGAAGGAGAGGGAAGCAAAAAAAAGGAGGAGGAGCAGAATAATAAGGCCAACAACAGGGCGCCCTCTCTCTCCCTCTTGGACTCATTCGTTTCAATCGCATCTCTCTCTCTCTCTCCCTTCATTTACTTTCTTTTTTATAACAGAGGAGAGAGGCAGAGAGATTTTGAATTACCCAAACAATGGAGAAAGTTTAGACATAGATAAGAGATTGGAAAGAAAAGCATTATAAAACAAAGAAAGGAAGAAAAGGAAAAGGGAAAGATGGTGAGGAGAAGGGGAAAAATGGTGGTGGTGAAGGTGAAAGTGGTGGTGCCCTCTTACCAGACATAAATTCATTTCCCTACGAACTCCATTCTCTCTCTCTCTCTCCCTCTCTCCTATTCAACACTCCGTCTACTCCTAAGACTTGAGAGGGTGGGAAGAACAGCATCTTCCTTGTCTTTCATGCTTCCCTTATGCTTCCTTTTATTATTGCCATCCTTCATTCCCAATCTTCTTCACGTTGCTCCATAAACACACCCACCACCACCGCCTTCTTTTTTTAACTTCCCTTACTTTTTCTTCTTCTTCATCTTCTCCAAACCTTTCTTCTATCCATCGATTCCTTCTTTGTTTCTCCCCTATGGCTGTTCAGGCTCAATATCCTTCTAATGTTTTGCTCTTAAACAGAAACGGTCAAGAAGGGCATGATTATCCATTACAGCCACAACCAGGAGGTTTTCTTGACCAGACTCATATGGTGTTTAACAACAGTACAGGCGGAAACAATTCTCGCAAAAGAGGAAGAGAAATTTCAACTGCCATTACGTCCATCGCGGCTCCGATCAATTTCGCTGCGGTACAGCAACCTCGTCCTCCTCTCCTTGTTGACCTCGCCAAACTCCACAACCACCAAAACAATGTCGTCTCCACTGGCCTCCGCCTGTCCTCCGGCGACCATCAACTGAATCAACCGCCGCAACAGCAACATCATCAACAACAGCAACATCATCAACAACAGCAACATCATCAACAACAGCAACATCAACATAATCACAATCTCGTCCCTCAATCATCATCGGCTTTCTTCTCGCTATTATCAGACGATTTCGCCTCTAATTTCAAACGGCAACAAGACGAAATAGATCAATTCCTTCAAGCACAGGAAGAGCAACTGCGGCGCACATTAGCAGAGAAAAGACAGAGACACTACCGTGCGCTTCTGGATGCGGTGGAGAAATCGGTATTCAGAAGATTAAGAGAGAGGGAGGCGGAGGTGGAAAAGGCAACTCGTCGAAACGCCGAGTTAGAAGCACGAGCCGCCCAGCTTAGCATCGAGGCGCAAGTCTGGCAAGCCAAAGCTAGGGCACAAGAAGCCACCGCCGTATCTTTGCAGGCACAACTGCAACGAGCGATGTCCATCGGCGGCGGAGGTGGAGGCGGAGGCGACGGAGGAGATGGCGGCACCGCCGATGATGCCGAGTCGGCTCACATTGACCCGGACCGAGTCGCTATTTTGGGACCGAGTTGCAGAGAGTGTAGAAAGCGCTTGGCGTCGGTGGTGCTTTTGCCGTGCCGTCATCTCTGCCTCTGTACAGACTGTGATCGAGTGGCTCAGACTTGCCCGTTGTGCCACATTCAGCGAAGCTCCAGCGTAGAGGTCTATCTCTCGTAGGGCCCAATCCCACGGCCCAATGCGGGTTACGCCCATAAACCGGCCCAGACAGTTCAATTGGCGGTTTTTTTCCTTCTTTTTTCCTTAAAATTTTAAAAAAAGTATTTAAGTAATAAAAGAATTACATTACCTTTTTTCATTATTATTTTTCGAAATATTCTGATAGACCATCCGAAACTTTTTTTTTTCCTTCTTTTTGCTTTTTTCTTTTTTGGAATGCCCGTGGAGGTAATGTAAATTGGCCACATTGCGGATTTTCCTTTCTTTTTTTTCTTTTTTTTTTTTAAATTTTAATTTTTATGGAATTTCATTCATTCATCTCCTAAATTATTTATTCAAAAAACTTCTTCAA
Coding sequence (CDS)
ATGGCTGTTCAGGCTCAATATCCTTCTAATGTTTTGCTCTTAAACAGAAACGGTCAAGAAGGGCATGATTATCCATTACAGCCACAACCAGGAGGTTTTCTTGACCAGACTCATATGGTGTTTAACAACAGTACAGGCGGAAACAATTCTCGCAAAAGAGGAAGAGAAATTTCAACTGCCATTACGTCCATCGCGGCTCCGATCAATTTCGCTGCGGTACAGCAACCTCGTCCTCCTCTCCTTGTTGACCTCGCCAAACTCCACAACCACCAAAACAATGTCGTCTCCACTGGCCTCCGCCTGTCCTCCGGCGACCATCAACTGAATCAACCGCCGCAACAGCAACATCATCAACAACAGCAACATCATCAACAACAGCAACATCATCAACAACAGCAACATCAACATAATCACAATCTCGTCCCTCAATCATCATCGGCTTTCTTCTCGCTATTATCAGACGATTTCGCCTCTAATTTCAAACGGCAACAAGACGAAATAGATCAATTCCTTCAAGCACAGGAAGAGCAACTGCGGCGCACATTAGCAGAGAAAAGACAGAGACACTACCGTGCGCTTCTGGATGCGGTGGAGAAATCGGTATTCAGAAGATTAAGAGAGAGGGAGGCGGAGGTGGAAAAGGCAACTCGTCGAAACGCCGAGTTAGAAGCACGAGCCGCCCAGCTTAGCATCGAGGCGCAAGTCTGGCAAGCCAAAGCTAGGGCACAAGAAGCCACCGCCGTATCTTTGCAGGCACAACTGCAACGAGCGATGTCCATCGGCGGCGGAGGTGGAGGCGGAGGCGACGGAGGAGATGGCGGCACCGCCGATGATGCCGAGTCGGCTCACATTGACCCGGACCGAGTCGCTATTTTGGGACCGAGTTGCAGAGAGTGTAGAAAGCGCTTGGCGTCGGTGGTGCTTTTGCCGTGCCGTCATCTCTGCCTCTGTACAGACTGTGATCGAGTGGCTCAGACTTGCCCGTTGTGCCACATTCAGCGAAGCTCCAGCGTAGAGGTCTATCTCTCGTAG
Protein sequence
MAVQAQYPSNVLLLNRNGQEGHDYPLQPQPGGFLDQTHMVFNNSTGGNNSRKRGREISTAITSIAAPINFAAVQQPRPPLLVDLAKLHNHQNNVVSTGLRLSSGDHQLNQPPQQQHHQQQQHHQQQQHHQQQQHQHNHNLVPQSSSAFFSLLSDDFASNFKRQQDEIDQFLQAQEEQLRRTLAEKRQRHYRALLDAVEKSVFRRLREREAEVEKATRRNAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQLQRAMSIGGGGGGGGDGGDGGTADDAESAHIDPDRVAILGPSCRECRKRLASVVLLPCRHLCLCTDCDRVAQTCPLCHIQRSSSVEVYLS
Homology
BLAST of CmaCh02G015830.1 vs. ExPASy Swiss-Prot
Match:
Q9FHE4 (BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG1 PE=1 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 6.8e-17
Identity = 68/205 (33.17%), Postives = 113/205 (55.12%), Query Frame = 0
Query: 150 SLLSDDFASNFKRQQDEIDQFLQAQEEQLRRTLAEKRQRHYRALLDAVEKSVFRRLRERE 209
SL+ + S ++Q EID+F+ Q E LR L +++ R L AV+ ++ ++L+ ++
Sbjct: 96 SLIDAELVSQIQQQNSEIDRFVAQQTETLRIELEARQRTQTRMLASAVQNAILKKLKAKD 155
Query: 210 AEVEKATRRNAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQLQRAMSIGGGGGGGGD 269
E+ + + N L+ R L +E Q+W+ A+ EATA +L++ L++ ++ D
Sbjct: 156 EEIIRMGKLNWVLQERVKNLYVENQIWRDLAQTNEATANNLRSNLEQVLA-------QVD 215
Query: 270 GGDG------GTADDAES---AHIDPDRVAILGPSCRECRKRLASVVLLPCRHLCLCTDC 329
D ADDAES + D A++ C+ C + ASV++LPCRHLCLCT C
Sbjct: 216 DLDAFRRPLVEEADDAESSCGSCDGGDVTAVVNGGCKRCGELTASVLVLPCRHLCLCTVC 275
Query: 330 DRVA--QTCPLCHIQRSSSVEVYLS 344
A +TCP+C + ++SV V +S
Sbjct: 276 GSSALLRTCPVCDMVMTASVHVNMS 293
BLAST of CmaCh02G015830.1 vs. ExPASy Swiss-Prot
Match:
Q9LDD1 (Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=3702 GN=BRG3 PE=1 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 8.3e-15
Identity = 66/213 (30.99%), Postives = 111/213 (52.11%), Query Frame = 0
Query: 152 LSDDFASNFKRQQDEIDQFLQAQEEQLRRTLAEKRQRHYRALLDAVEKSVFRRLREREAE 211
L D +SN ++ +ID+ + E++R + EKR+ R +++AVE+ + + LR ++ E
Sbjct: 126 LGQDLSSNVQQHHFDIDRLISNHVERMRMEIEEKRKTQGRRIVEAVEQGLMKTLRAKDDE 185
Query: 212 VEKATRRNAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQLQRAMSI----------- 271
+ + N LE + L +E Q+W+ A++ EAT +L++ LQ+ ++
Sbjct: 186 INHIGKLNLFLEEKVKSLCVENQIWRDVAQSNEATVNALRSNLQQVLAAVERNRWEEPPT 245
Query: 272 ----GGGGGGGGDGGDG-----GTADDAESAHIDPDRVAILGPS-CRECRKRLASVVLLP 331
G D GD A +A+ D ++ +G S CR C K ASV+LLP
Sbjct: 246 VADDAQSCCGSNDEGDSEEERWKLAGEAQ----DTKKMCRVGMSMCRSCGKGEASVLLLP 305
Query: 332 CRHLCLCTDCDRVAQTCPLCHIQRSSSVEVYLS 344
CRH+CLC+ C TCP+C +++S+ V LS
Sbjct: 306 CRHMCLCSVCGSSLNTCPICKSPKTASLHVNLS 334
BLAST of CmaCh02G015830.1 vs. ExPASy Swiss-Prot
Match:
O81851 (E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana OX=3702 GN=BOI PE=1 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 3.1e-14
Identity = 66/210 (31.43%), Postives = 109/210 (51.90%), Query Frame = 0
Query: 150 SLLSDDFASNFK-RQQDEIDQFLQAQEEQLRRTLAEKRQRHYRALLDAVEKSVFRRLRER 209
SL++ + S + +QQ EID+F+ Q E+LR + ++Q R L AV+ + ++L+E+
Sbjct: 105 SLINVELVSQIQNQQQSEIDRFVAQQTEKLRIEIEARQQTQTRMLASAVQNVIAKKLKEK 164
Query: 210 EAEVEKATRRNAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQLQRAMS--------- 269
+ E+ + N L+ R L +E Q+W+ A+ EA A +L+ L + ++
Sbjct: 165 DDEIVRIRNLNWVLQERVKSLYVENQIWRDIAQTNEANANTLRTNLDQVLAQLETFPTAS 224
Query: 270 ----IGGGGGGGGDGGDGGTADDAESAHIDPDRVAILGPSCRECRKRLASVVLLPCRHLC 329
G GDGG + V +G C+ C +R ASV++LPCRHLC
Sbjct: 225 AVVEDDAESSCGSCCGDGG-----------GEAVTAVGGGCKRCGEREASVLVLPCRHLC 284
Query: 330 LCTDC--DRVAQTCPLCHIQRSSSVEVYLS 344
LCT C + +TCP+C + ++SV V +S
Sbjct: 285 LCTVCGGSALLRTCPVCDMVMNASVHVNMS 303
BLAST of CmaCh02G015830.1 vs. ExPASy Swiss-Prot
Match:
F4IDI6 (Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana OX=3702 GN=BRG2 PE=1 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 3.6e-10
Identity = 96/351 (27.35%), Postives = 159/351 (45.30%), Query Frame = 0
Query: 26 LQPQPGGFLDQTHMVFNNSTGGNNSRKRGREISTAITSIAAPINFAAVQQPRPPLLVDLA 85
++P GGF + NN TG ++ + P + + PPLL
Sbjct: 28 MEPTSGGFCN------NNQTGYG-----------VVSPFSVPNHTSTTTTATPPLL---- 87
Query: 86 KLHNHQNNVVSTGLRLSSGDHQLNQP--PQQQHHQQQQHHQQQQHHQQQQHQHNHNLV-- 145
++ + + +T + G L+ P + + + HH Q+ + + V
Sbjct: 88 HVYGGSDTIPTTAGYYADGATNLDCEFFPLPTRKRSRDSSRSNYHHLLLQNPRSSSCVNA 147
Query: 146 --PQSSSAFFSLLSD--DFASNFKRQQDEIDQFLQA---QEEQLRRTLAEKRQRHYRALL 205
+++ FS L D +S+ +QQ EID+F+ Q E+++ + EKR+R R ++
Sbjct: 148 ATTTTTTTLFSFLGQDIDISSHMNQQQHEIDRFVSLHLYQMERVKYEIEEKRKRQARTIM 207
Query: 206 DAVEKSVFRRLREREAEVEKATRRNAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQL 265
+A+E+ + +RLR +E E E+ + N LE R LSIE Q+W+ A+ EATA L+ L
Sbjct: 208 EAIEQGLVKRLRVKEEERERIGKVNHALEERVKSLSIENQIWRDLAQTNEATANHLRTNL 267
Query: 266 QRAMS-IGGGGGGGGDGGDGGTADDAESA---------------HIDPDRVA------IL 325
+ ++ + G G + DDAES + +R A
Sbjct: 268 EHVLAQVKDVSRGAGLEKNMNEEDDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRR 327
Query: 326 GPSCRECRKRLASVVLLPCRHLCLCTDCDRVAQTCPLCHIQRSSSVEVYLS 344
CR C + + V+LLPCRHLCLC C TCP+C +++SV V +S
Sbjct: 328 RRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICTSPKNASVHVNMS 357
BLAST of CmaCh02G015830.1 vs. TAIR 10
Match:
AT5G47050.1 (SBP (S-ribonuclease binding protein) family protein )
HSP 1 Score: 210.3 bits (534), Expect = 2.4e-54
Identity = 155/356 (43.54%), Postives = 205/356 (57.58%), Query Frame = 0
Query: 1 MAVQAQYPSNVLLLNRNGQEGHDYPLQPQPGGFLDQTHMVFNNSTGGNNSRKRGREISTA 60
MAVQA + + L NGQEG+D P + Q F++ G ++RKR RE+S+
Sbjct: 1 MAVQAHHHPSTLFFLNNGQEGNDQPHKSQ-----------FHSINAGVDTRKRAREVSSV 60
Query: 61 I--TSIAAPINFAAVQQPRPPLLVDLAKLHNHQN-NVVSTGLRLSSGDHQLNQPPQQQHH 120
I AAP+N PP + QN NVVSTGLRLS
Sbjct: 61 IDLDITAAPMN--------PPPQTPPQVIGRRQNPNVVSTGLRLS--------------- 120
Query: 121 QQQQHHQQQQHHQQQQHQHNHNLVPQSSSAFFSL-LSDDFASNFKRQQDEIDQFLQAQEE 180
++Q +Q+Q+ F S ++ D A K Q DE+++FLQ Q E
Sbjct: 121 ------REQSQNQEQR--------------FLSFPITGDVAGEIKSQTDELNRFLQIQGE 180
Query: 181 QLRRTLAEKRQRHYRALLDAVEKSVFRRLREREAEVEKATRRNAELEARAAQLSIEAQVW 240
QL+R LAE +R+YR LL E+SV RRLRE+EAE+EKATRR+ ELEARA Q+ EA+ W
Sbjct: 181 QLKRMLAENSERNYRELLRTTEESVRRRLREKEAEIEKATRRHVELEARATQIETEARAW 240
Query: 241 QAKARAQEATAVSLQAQLQRAMSIGGGGG---------GGGDGGDGGTADDAESAHIDPD 300
Q +A A+EA A SLQAQL +A+ + GGG G DG D A+DAESA++DPD
Sbjct: 241 QMRAAAREAEATSLQAQLHQAVVVAHGGGVITTVEPQSGSVDGVD--EAEDAESAYVDPD 300
Query: 301 RVAILGPSCRECRKRLASVVLLPCRHLCLCTDCDRVAQTCPLCHIQRSSSVEVYLS 344
RV ++GP CR CR+R A+V+ LPCRHL +CT+CD + CPLC ++SSVEV+ S
Sbjct: 301 RVEMIGPGCRICRRRSATVLALPCRHLVMCTECDGSVRICPLCLSTKNSSVEVFYS 300
BLAST of CmaCh02G015830.1 vs. TAIR 10
Match:
AT1G32740.1 (SBP (S-ribonuclease binding protein) family protein )
HSP 1 Score: 209.1 bits (531), Expect = 5.4e-54
Identity = 157/357 (43.98%), Postives = 208/357 (58.26%), Query Frame = 0
Query: 1 MAVQAQ-YPSNVLLLN-RNGQEGH--DYPLQPQPGG-FLDQTHMVFNNSTGGNNSRKRGR 60
MAVQAQ + SN+L LN RNG+E ++ LQ Q G FLDQT+M+FNN G +N RKR R
Sbjct: 1 MAVQAQHHSSNLLFLNKRNGKEKEHSNFTLQSQAAGDFLDQTNMLFNN--GSSNQRKRRR 60
Query: 61 EISTAITSIAAPINFAAVQQPRPPLLVDLAKLHNHQ---NNVVSTGLRLSSGDHQLNQPP 120
E + +Q + P ++DL+ LHN+ +N+V TGLRL SG+
Sbjct: 61 ETNNH--------QLLPMQSHQFPQVIDLSLLHNYNHPPSNMVHTGLRLFSGE------- 120
Query: 121 QQQHHQQQQHHQQQQHHQQQQHQHNHNLVPQSSSAFFSLLSDDFASNFKRQQDEIDQFLQ 180
Q Q+ H L D FA++ RQ +E+D+FL
Sbjct: 121 ----------------DQAQKISH--------------LSEDVFAAHINRQSEELDEFLH 180
Query: 181 AQEEQLRRTLAEKRQRHYRALLDAVEKSVFRRLREREAEVEKATRRNAELEARAAQLSIE 240
AQ E+LRRTLAEKR+ HY+ALL AVE+S+ R+LRE+E E+E+ATRR+ EL AR +QL E
Sbjct: 181 AQAEELRRTLAEKRKMHYKALLGAVEESLVRKLREKEVEIERATRRHNELVARDSQLRAE 240
Query: 241 AQVWQAKARAQEATAVSLQAQLQRAMSIGGGGGGGGDGGDGGT----------ADDAESA 300
QVWQ +A+A E A SLQ+QLQ+A++ GG DDAES
Sbjct: 241 VQVWQERAKAHEDAAASLQSQLQQAVNQCAGGCVSAQDSRAAEEGLLCTTISGVDDAESV 300
Query: 301 HIDPDRVAILGPSCRECRKRLASVVLLPCRHLCLCTDCDRVAQTCPLCHIQRSSSVE 340
++DP+RV P+C+ CR+R A+VV+LPCRHL +C CDR A CPLC R+SSVE
Sbjct: 301 YVDPERVK--RPNCKACREREATVVVLPCRHLSICPGCDRTALACPLCLTLRNSSVE 308
BLAST of CmaCh02G015830.1 vs. TAIR 10
Match:
AT4G17680.1 (SBP (S-ribonuclease binding protein) family protein )
HSP 1 Score: 201.1 bits (510), Expect = 1.5e-51
Identity = 144/346 (41.62%), Postives = 193/346 (55.78%), Query Frame = 0
Query: 1 MAVQAQYPSNVLLLNRNGQEGHDYPLQPQPGGFLDQTHMVFNNSTGGNNSRKRGREISTA 60
MA+QAQ+PS N NGQE D LQPQ F N + G +SRKR RE+ ++
Sbjct: 18 MAIQAQHPSRFFFNNSNGQEASDCSLQPQDTPFT-------NFTKAGVDSRKRSREVYSS 77
Query: 61 ITSIAAPINFAAVQQPRPPLLVDLAKLHNHQNNVVSTGLRLSSGDHQLNQPPQQQHHQQQ 120
P P+P ++D+ +L NVVSTGLRL
Sbjct: 78 ALMNPPP--------PKPSQVIDITELLQKTPNVVSTGLRL------------------- 137
Query: 121 QHHQQQQHHQQQQHQHNHNLVPQSSSAFFSLLSDDFASNFKRQQDEIDQFLQAQEEQLRR 180
H Q Q+ QQ FFS L D KRQ+DE+D+F+Q Q E+LRR
Sbjct: 138 -FHDQSQNQQQ----------------FFSSLPGDVTGKIKRQRDELDRFIQTQGEELRR 197
Query: 181 TLAEKRQRHYRALLDAVEKSVFRRLREREAEVEKATRRNAELEARAAQLSIEAQVWQAKA 240
TLA+ R+R Y LL A E+ V R+LR++EAE+EKATRR+AELEAR A + EA+ WQ +A
Sbjct: 198 TLADNRERRYVELLCAAEEIVGRKLRKKEAELEKATRRHAELEARVAHIVEEARNWQLRA 257
Query: 241 RAQEATAVSLQAQLQRAM-----SIGGGGGGGGDGGDGGTADDAESAHIDPDRVAILGPS 300
+EA SL A LQ+A+ + G DGGD A+DAES ++DP+R+ ++GPS
Sbjct: 258 ATREAEVSSLHAHLQQAIANRLDTAAKQSTFGEDGGDAEEAEDAESVYVDPERIELIGPS 312
Query: 301 CRECRKRLASVVLLPCRHLCLCTDCD-RVAQTCPLCHIQRSSSVEV 341
CR CR++ A+V+ LPC+HL LC CD + CP+C ++S VEV
Sbjct: 318 CRICRRKSATVMALPCQHLILCNGCDVGAVRVCPICLAVKTSGVEV 312
BLAST of CmaCh02G015830.1 vs. TAIR 10
Match:
AT4G17680.2 (SBP (S-ribonuclease binding protein) family protein )
HSP 1 Score: 168.7 bits (426), Expect = 8.2e-42
Identity = 117/271 (43.17%), Postives = 159/271 (58.67%), Query Frame = 0
Query: 76 PRPPLLVDLAKLHNHQNNVVSTGLRLSSGDHQLNQPPQQQHHQQQQHHQQQQHHQQQQHQ 135
P+P ++D+ +L NVVSTGLRL H Q Q+ QQ
Sbjct: 6 PKPSQVIDITELLQKTPNVVSTGLRL--------------------FHDQSQNQQQ---- 65
Query: 136 HNHNLVPQSSSAFFSLLSDDFASNFKRQQDEIDQFLQAQEEQLRRTLAEKRQRHYRALLD 195
FFS L D KRQ+DE+D+F+Q Q E+LRRTLA+ R+R Y LL
Sbjct: 66 ------------FFSSLPGDVTGKIKRQRDELDRFIQTQGEELRRTLADNRERRYVELLC 125
Query: 196 AVEKSVFRRLREREAEVEKATRRNAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQLQ 255
A E+ V R+LR++EAE+EKATRR+AELEAR A + EA+ WQ +A +EA SL A LQ
Sbjct: 126 AAEEIVGRKLRKKEAELEKATRRHAELEARVAHIVEEARNWQLRAATREAEVSSLHAHLQ 185
Query: 256 RAM-----SIGGGGGGGGDGGDGGTADDAESAHIDPDRVAILGPSCRECRKRLASVVLLP 315
+A+ + G DGGD A+DAES ++DP+R+ ++GPSCR CR++ A+V+ LP
Sbjct: 186 QAIANRLDTAAKQSTFGEDGGDAEEAEDAESVYVDPERIELIGPSCRICRRKSATVMALP 240
Query: 316 CRHLCLCTDCD-RVAQTCPLCHIQRSSSVEV 341
C+HL LC CD + CP+C ++S VEV
Sbjct: 246 CQHLILCNGCDVGAVRVCPICLAVKTSGVEV 240
BLAST of CmaCh02G015830.1 vs. TAIR 10
Match:
AT1G10650.1 (SBP (S-ribonuclease binding protein) family protein )
HSP 1 Score: 107.5 bits (267), Expect = 2.2e-23
Identity = 95/315 (30.16%), Postives = 152/315 (48.25%), Query Frame = 0
Query: 52 KRGREISTAITSIAAPINFAAVQQPRPPLLVDLAKLHNH--------QNNVVSTGLRLSS 111
KRGRE + +I Q+ + L + L +N+ + N+VSTGLRLS
Sbjct: 62 KRGREAESISNNI---------QRQQQKLQMSLNYNYNNTSVREEVPKENLVSTGLRLSY 121
Query: 112 GDHQLNQPPQQQHHQQQQHHQQQQHHQQQQHQHNHNLVPQS-----SSAFFSLLSDDFAS 171
D +HN ++ S +S F L D
Sbjct: 122 DD----------------------------DEHNSSVTSASGSILAASPIFQSLDDSLRI 181
Query: 172 NFKRQQDEIDQFLQAQEEQLRRTLAEKRQRHYRALLDAVEKSVFRRLREREAEVEKATRR 231
+ RQ+DE DQF++ Q Q+ + + + +QRH + L +EK V ++L+E++ E+ ++
Sbjct: 182 DLHRQKDEFDQFIKIQAAQMAKGVRDMKQRHIASFLTTLEKGVSKKLQEKDHEINDMNKK 241
Query: 232 NAELEARAAQLSIEAQVWQAKARAQEATAVSLQAQLQRAM----SIGGGGGGGGDGGDGG 291
N EL R Q+++EAQ W +A+ E+ L+A LQ+AM S+ G +G
Sbjct: 242 NKELVERIKQVAMEAQNWHYRAKYNESVVNVLKANLQQAMSHNNSVIAAADQGKEGFGDS 301
Query: 292 TADDAESAHIDP-----DRVAI-LGPSCRECRKRLASVVLLPCRHLCLCTDCDRVAQTCP 344
DDA S++IDP + + I C+ C + SV+++PCRHL LC +CD + CP
Sbjct: 302 EIDDAASSYIDPNNNNNNNMGIHQRMRCKMCNVKEVSVLIVPCRHLSLCKECDVFTKICP 339
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9FHE4 | 6.8e-17 | 33.17 | BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG... | [more] |
Q9LDD1 | 8.3e-15 | 30.99 | Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=37... | [more] |
O81851 | 3.1e-14 | 31.43 | E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana OX=3702 GN=BOI PE=1 SV=1 | [more] |
F4IDI6 | 3.6e-10 | 27.35 | Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana OX=37... | [more] |
Match Name | E-value | Identity | Description | |
AT5G47050.1 | 2.4e-54 | 43.54 | SBP (S-ribonuclease binding protein) family protein | [more] |
AT1G32740.1 | 5.4e-54 | 43.98 | SBP (S-ribonuclease binding protein) family protein | [more] |
AT4G17680.1 | 1.5e-51 | 41.62 | SBP (S-ribonuclease binding protein) family protein | [more] |
AT4G17680.2 | 8.2e-42 | 43.17 | SBP (S-ribonuclease binding protein) family protein | [more] |
AT1G10650.1 | 2.2e-23 | 30.16 | SBP (S-ribonuclease binding protein) family protein | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh02G015830.1:exon:2760 | CmaCh02G015830.1:exon:2760 | exon |
CmaCh02G015830.1:exon:2759 | CmaCh02G015830.1:exon:2759 | exon |
CmaCh02G015830.1:exon:2758 | CmaCh02G015830.1:exon:2758 | exon |
CmaCh02G015830.1:exon:2757 | CmaCh02G015830.1:exon:2757 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh02G015830.1:three_prime_utr | CmaCh02G015830.1:three_prime_utr | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh02G015830.1:cds | CmaCh02G015830.1:cds_4 | CDS |
CmaCh02G015830.1:cds | CmaCh02G015830.1:cds_3 | CDS |
CmaCh02G015830.1:cds | CmaCh02G015830.1:cds_2 | CDS |
CmaCh02G015830.1:cds | CmaCh02G015830.1:cds | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh02G015830.1:five_prime_utr | CmaCh02G015830.1:five_prime_utr | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CmaCh02G015830.1 | CmaCh02G015830.1-protein | polypeptide |