CmaCh02G007250.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G007250.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein
Location	Cma_Chr02: 4403586 .. 4404065 (+)
Sequence length	480
RNA-Seq Expression	CmaCh02G007250.1
Synteny	CmaCh02G007250.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTGGTTCCTCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGATGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGACGCTGTGAACAGTATGGTATATGAAGCTAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGGGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAGCTGGCGGCAGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTTCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCCCTGTGGAGTTGA

mRNA sequence

ATGGGAGCTGGTTCCTCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGATGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGACGCTGTGAACAGTATGGTATATGAAGCTAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGGGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAGCTGGCGGCAGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTTCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCCCTGTGGAGTTGA

Coding sequence (CDS)

ATGGGAGCTGGTTCCTCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGATGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGACGCTGTGAACAGTATGGTATATGAAGCTAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGGGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAGCTGGCGGCAGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTTCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCCCTGTGGAGTTGA

Protein sequence

MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS

Homology

[Close]

BLAST of CmaCh02G007250.1 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 9.7e-51
Identity = 99/137 (72.26%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRP 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPPDDP+KFAIVHK+FGASNVSKMLQELP+ QR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASASF 121
           DAVNS+V+EA+AR+RDPVYGCVGAI++LQNQVS+L+MQLA AQAEIL  QMQ +    S 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

Query: 122 PMTQMNQYDQNLVFLSN 139
                   D   + L+N
Sbjct: 123 HQVLELDQDHKALLLNN 139

[Close]

BLAST of CmaCh02G007250.1 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 79/118 (66.95%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP D+P KFA VH++FGASNV+KMLQELP+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASASFP 123
           +SMVYEA+AR+RDPVYGCVGAI+ LQ Q+  L+ QLA AQAE++  +++Q   S +FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ---STNFP 125

[Close]

BLAST of CmaCh02G007250.1 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 84/153 (54.90%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASA---SFP 125
           SMVYEA ARMRDPVYGC GAI  LQ QVS L+ QLA  Q E++  Q+Q+ +      +  
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 MTQMNQYDQNLVFLSNADSFNSVD---GSPEVE 153
            T+++  +Q    +S   SF S D    SP+ E
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPDEE 206

[Close]

BLAST of CmaCh02G007250.1 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-38
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ-QAASASFPMT 125
           SMVYEA AR+RDPVYGC GAI  LQ QVS L+ QLA AQ E+++ Q Q+       + M 
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 QMNQYDQ-NLVFLSN 139
           Q  + +Q N+ F SN
Sbjct: 152 QQQKQEQDNMSFESN 166

[Close]

BLAST of CmaCh02G007250.1 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 85/161 (52.80%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKD-CIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 61
           G   SPCA CKLLRR+C KD C+FAPYFP  +PYKFAIVHKIFGASNV+KMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 62  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 121
            DAV+SMVYEA+AR++DPVYGCVG I+ L  Q+  L+ QLA AQAE++  +   +  +  
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 122 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCS--LWS 160
            P T        + F SN D ++ +D +    D     LWS
Sbjct: 129 PPYTA-----STVTFPSNKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CmaCh02G007250.1 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-52
Identity = 99/137 (72.26%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRP 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPPDDP+KFAIVHK+FGASNVSKMLQELP+ QR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASASF 121
           DAVNS+V+EA+AR+RDPVYGCVGAI++LQNQVS+L+MQLA AQAEIL  QMQ +    S 
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

Query: 122 PMTQMNQYDQNLVFLSN 139
                   D   + L+N
Sbjct: 123 HQVLELDQDHKALLLNN 139

[Close]

BLAST of CmaCh02G007250.1 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-41
Identity = 79/118 (66.95%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP D+P KFA VH++FGASNV+KMLQELP+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASASFP 123
           +SMVYEA+AR+RDPVYGCVGAI+ LQ Q+  L+ QLA AQAE++  +++Q   S +FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ---STNFP 125

[Close]

BLAST of CmaCh02G007250.1 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 161.0 bits (406), Expect = 7.9e-40
Identity = 84/153 (54.90%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASA---SFP 125
           SMVYEA ARMRDPVYGC GAI  LQ QVS L+ QLA  Q E++  Q+Q+ +      +  
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 MTQMNQYDQNLVFLSNADSFNSVD---GSPEVE 153
            T+++  +Q    +S   SF S D    SP+ E
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPDEE 206

[Close]

BLAST of CmaCh02G007250.1 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQELP  QR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ-QAASASFPMT 125
           SMVYEA AR+RDPVYGC GAI  LQ QVS L+ QLA AQ E+++ Q Q+       + M 
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 QMNQYDQ-NLVFLSN 139
           Q  + +Q N+ F SN
Sbjct: 152 QQQKQEQDNMSFESN 166

[Close]

BLAST of CmaCh02G007250.1 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38
Identity = 85/161 (52.80%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKD-CIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 61
           G   SPCA CKLLRR+C KD C+FAPYFP  +PYKFAIVHKIFGASNV+KMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 62  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 121
            DAV+SMVYEA+AR++DPVYGCVG I+ L  Q+  L+ QLA AQAE++  +   +  +  
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 122 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCS--LWS 160
            P T        + F SN D ++ +D +    D     LWS
Sbjct: 129 PPYTA-----STVTFPSNKDFYSDIDMAVAYTDDAGDFLWS 164

The following BLAST results are available for this feature:

BLAST of CmaCh02G007250.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	9.7e-51	72.26	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	2.0e-40	66.95	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SK08	1.1e-38	54.90	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9LQR0	3.2e-38	60.00	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SA51	2.7e-37	52.80	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]

BLAST of CmaCh02G007250.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30130.1	6.9e-52	72.26	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.4e-41	66.95	LOB domain-containing protein 4	[more]
AT2G28500.1	7.9e-40	54.90	LOB domain-containing protein 11	[more]
AT1G07900.1	2.3e-39	60.00	LOB domain-containing protein 1	[more]
AT1G16530.1	1.9e-38	52.80	ASYMMETRIC LEAVES 2-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..113
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 1..124
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..124
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 2.2E-40 score: 137.2
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 26.68141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G007250	CmaCh02G007250	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G007250.1:exon:824	CmaCh02G007250.1:exon:824	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G007250.1:cds	CmaCh02G007250.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G007250.1	CmaCh02G007250.1-protein	polypeptide