CmaCh01G013450.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G013450.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	At4g19430
Location	Cma_Chr01: 9616187 .. 9616597 (+)
Sequence length	411
RNA-Seq Expression	CmaCh01G013450.1
Synteny	CmaCh01G013450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTTCCATCCAAGTTCTAGGCTTAAAAAGCCTTCAGAAGCAAGAGAAAAAGTGCCATAGGAGAGAGATTTTAGAGAGAGAAGGAATTGGTCATTTCAGCATTTCCCAACATGGGCATCATGAGAGTGAGCAGCCTGCAGATGGCAAGGGAAGAAGAAGGGAGAAGAAGCAGGGACGAAGAAGAAAGACGACTCAGTTTGGAGCTGCTAGACAAGTTCTTCAATGGAACATGTGGTACTTTACCTCAACAATCAGCTATATTTTAAGGAAGGCCAAAGCCTTTTACAATGAGTGTTGCTGTGATGCTTATGAAGATGAGAGGATGAAGAGAGTTGAAGTGGCTATGGTTGATCCTTATTTCTCAATGCCTGTTTTTCCTTATACTACTATGGCTAATTGTATGTAA

mRNA sequence

ATGTCTGTTTCCATCCAAGTTCTAGGCTTAAAAAGCCTTCAGAAGCAAGAGAAAAAGTGCCATAGGAGAGAGATTTTAGAGAGAGAAGGAATTGGTCATTTCAGCATTTCCCAACATGGGCATCATGAGAGTGAGCAGCCTGCAGATGGCAAGGGAAGAAGAAGGGAGAAGAAGCAGGGACGAAGAAGAAAGACGACTCAGTTTGGAGCTGCTAGACAAGTTCTTCAATGGAACATGTGGTACTTTACCTCAACAATCAGCTATATTTTAAGGAAGGCCAAAGCCTTTTACAATGAGTGTTGCTGTGATGCTTATGAAGATGAGAGGATGAAGAGAGTTGAAGTGGCTATGGTTGATCCTTATTTCTCAATGCCTGTTTTTCCTTATACTACTATGGCTAATTGTATGTAA

Coding sequence (CDS)

ATGTCTGTTTCCATCCAAGTTCTAGGCTTAAAAAGCCTTCAGAAGCAAGAGAAAAAGTGCCATAGGAGAGAGATTTTAGAGAGAGAAGGAATTGGTCATTTCAGCATTTCCCAACATGGGCATCATGAGAGTGAGCAGCCTGCAGATGGCAAGGGAAGAAGAAGGGAGAAGAAGCAGGGACGAAGAAGAAAGACGACTCAGTTTGGAGCTGCTAGACAAGTTCTTCAATGGAACATGTGGTACTTTACCTCAACAATCAGCTATATTTTAAGGAAGGCCAAAGCCTTTTACAATGAGTGTTGCTGTGATGCTTATGAAGATGAGAGGATGAAGAGAGTTGAAGTGGCTATGGTTGATCCTTATTTCTCAATGCCTGTTTTTCCTTATACTACTATGGCTAATTGTATGTAA

Protein sequence

MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYTTMANCM

Homology

[Close]

BLAST of CmaCh01G013450.1 vs. ExPASy TrEMBL
Match: A0A6J1FKP2 (uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC111446301 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.8e-67
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MSVSIQVLGLKSLQK+EKKCHRRE+LERE  GHFS SQHGHHESEQP DGKGRRR KKQG
Sbjct: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQG 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP
Sbjct: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPVFPYTTMANCM
Sbjct: 121 YFSMPVFPYTTMANCM 136

[Close]

BLAST of CmaCh01G013450.1 vs. ExPASy TrEMBL
Match: A0A0A0L609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.6e-35
Identity = 84/136 (61.76%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MSVS Q+L L  L+K+ KK  +RE L+RE  G++S       ++E+  + KGRRR K   
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVLPYTTMANCM 130

[Close]

BLAST of CmaCh01G013450.1 vs. ExPASy TrEMBL
Match: A0A5A7UDK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001040 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.8e-31
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MS+S Q+LGL  L+K+ +K  +RE  +RE  G++S  +    ++ +  D KGRRR     
Sbjct: 1   MSLSTQLLGLGRLEKKGRKKIKRESSKRERNGYYSYKEVS--DNAEHGDSKGRRRR---- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDAYEDERM       +DP
Sbjct: 61  RRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERM----FQSIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANC+
Sbjct: 121 YFSMPVLPYTTMANCL 126

[Close]

BLAST of CmaCh01G013450.1 vs. ExPASy TrEMBL
Match: A0A5D3BSQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00900 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.8e-31
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MS+S Q+LGL  L+K+ +K  +RE  +RE  G++S  +    ++ +  D KGRRR     
Sbjct: 1   MSLSTQLLGLGRLEKKGRKRIKRESSKRERNGYYSYKEVS--DNAEHGDSKGRRRR---- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDAYEDERM       +DP
Sbjct: 61  RRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERM----FQSIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANC+
Sbjct: 121 YFSMPVLPYTTMANCL 126

[Close]

BLAST of CmaCh01G013450.1 vs. ExPASy TrEMBL
Match: A0A1Q3D8H6 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32173 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 11  KSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQGRRRKTTQFGA 70
           KS+  + +  H R    R    +  +  H   E E+    K   R+KK G          
Sbjct: 4   KSVSSRSQNVHFRVSSRR----NIKLESHLEEEHEENMGEKYMPRKKKPGH--------W 63

Query: 71  ARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYT 130
           A Q  +  +WY TS+ISYILRKAKAFYNECCCDA+ED  +   +V +VD YFS PV P  
Sbjct: 64  ALQFPRLGIWYMTSSISYILRKAKAFYNECCCDAFEDPVLMGKQVTLVDSYFSTPVVPPP 117

Query: 131 TMANCM 137
           T++  M
Sbjct: 124 TISPYM 117

[Close]

BLAST of CmaCh01G013450.1 vs. NCBI nr
Match: KAG6608012.1 (hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.0 bits (676), Expect = 3.6e-67
Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MSVSIQVLGL SLQK+EKKCHRREILERE  GHFS SQHGHHESEQP DGKGRRREKKQG
Sbjct: 1   MSVSIQVLGLTSLQKKEKKCHRREILERERTGHFSTSQHGHHESEQPGDGKGRRREKKQG 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP
Sbjct: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPVFPYTTMANCM
Sbjct: 121 YFSMPVFPYTTMANCM 136

[Close]

BLAST of CmaCh01G013450.1 vs. NCBI nr
Match: XP_022940822.1 (uncharacterized protein LOC111446301 [Cucurbita moschata])

HSP 1 Score: 263.8 bits (673), Expect = 7.9e-67
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MSVSIQVLGLKSLQK+EKKCHRRE+LERE  GHFS SQHGHHESEQP DGKGRRR KKQG
Sbjct: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQG 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP
Sbjct: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPVFPYTTMANCM
Sbjct: 121 YFSMPVFPYTTMANCM 136

[Close]

BLAST of CmaCh01G013450.1 vs. NCBI nr
Match: KGN55571.1 (hypothetical protein Csa_012627 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 84/136 (61.76%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MSVS Q+L L  L+K+ KK  +RE L+RE  G++S       ++E+  + KGRRR K   
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVLPYTTMANCM 130

[Close]

BLAST of CmaCh01G013450.1 vs. NCBI nr
Match: TYK01842.1 (hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MS+S Q+LGL  L+K+ +K  +RE  +RE  G++S  +    ++ +  D KGRRR     
Sbjct: 1   MSLSTQLLGLGRLEKKGRKRIKRESSKRERNGYYSYKEVS--DNAEHGDSKGRRRR---- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDAYEDERM       +DP
Sbjct: 61  RRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERM----FQSIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANC+
Sbjct: 121 YFSMPVLPYTTMANCL 126

[Close]

BLAST of CmaCh01G013450.1 vs. NCBI nr
Match: KAA0052276.1 (hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MSVSIQVLGLKSLQKQEKKCHRREILEREGIGHFSISQHGHHESEQPADGKGRRREKKQG 60
           MS+S Q+LGL  L+K+ +K  +RE  +RE  G++S  +    ++ +  D KGRRR     
Sbjct: 1   MSLSTQLLGLGRLEKKGRKKIKRESSKRERNGYYSYKEVS--DNAEHGDSKGRRRR---- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
           RRRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDAYEDERM       +DP
Sbjct: 61  RRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERM----FQSIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANC+
Sbjct: 121 YFSMPVLPYTTMANCL 126

[Close]

BLAST of CmaCh01G013450.1 vs. TAIR 10
Match: AT4G19430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 43  ESEQPADGKGRRREKKQGRRRKTTQFG-AARQVLQWN-MWYFTSTISYILRKAKAFYNEC 102
           E+ Q   GK      K G+    T++G   R V + + +WY   +IS+ILRKA+AFYNE 
Sbjct: 80  ETNQQEHGK---VSNKDGKSITATKYGDLRRDVARLSLLWYMKCSISHILRKARAFYNEF 139

Query: 103 CCDAYEDERMKRVEVAMVDPYFSMPV 127
           CCD Y +       +A+V+PYFS+PV
Sbjct: 140 CCDTYAESN----TMAVVEPYFSIPV 158

The following BLAST results are available for this feature:

BLAST of CmaCh01G013450.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKP2	3.8e-67	94.85	uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A0A0L609	6.6e-35	61.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1	[more]
A0A5A7UDK1	5.8e-31	58.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSQ8	5.8e-31	58.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1Q3D8H6	2.3e-11	40.48	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]

BLAST of CmaCh01G013450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608012.1	3.6e-67	95.59	hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940822.1	7.9e-67	94.85	uncharacterized protein LOC111446301 [Cucurbita moschata]	[more]
KGN55571.1	1.4e-34	61.76	hypothetical protein Csa_012627 [Cucumis sativus]	[more]
TYK01842.1	1.2e-30	58.09	hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa]	[more]
KAA0052276.1	1.2e-30	58.09	hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh01G013450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19430.1	1.4e-08	41.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G013450	CmaCh01G013450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013450.1:exon:436	CmaCh01G013450.1:exon:436	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013450.1:cds	CmaCh01G013450.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013450.1	CmaCh01G013450.1-protein	polypeptide