CmaCh01G013170.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G013170.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 9398013 .. 9401902 (-)
Sequence length	339
RNA-Seq Expression	CmaCh01G013170.1
Synteny	CmaCh01G013170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGAACCTCTGAACAAGGTATTCTTCGCCAGGTCTTAACCATTCCCTACAAAACCAAGCACAAAACATTCAATAAAATGTCATTTACATTTGGCTCTTAAAATCATTAAGAACTTTTATCTTCATCTTTCACGATCTCCCCCTATTCATCCTCTTTTTGCATTTTTATCTATATCTACGACCACTTTTTTTCTAGCTCCCAATACATTTTCTCTTTTAACTTCTTTACCCTTCTCCCATTAGTATCGTGCCAAATACTAAGCTACTTAAGACATACTCTCGATCAAGAAGTTAGACAATCGAATCTTACTTAGAATTCTTATTTCCATCATAGATTTTTACTTGTAATCGTTTAAACCGAACCCTTGTTCTTAAAGTTGGTGAAATTACTAATCACAAGGCAAGAGAAGAATCAAGGAAGATCCTTTTACTTGTTTGTATATGTATTTAAAGCCATACAACTATTATCGTGAGTACTGGTTCTTTTGGCTTGAGTTGAATACATTTATCTACTTTATTTTGTCAAGGTTAAGCCTTCTATGATTTGATTTTGAATGCTTGGTTAGTACAATTTCAGGTGATTCCAGAACAAATCTTTAGCTCTAAATAGGTACTGATTTCACTAAGTATCCAAATCTAGATTAATTAATCCCTTAAACAGGTTATATGTATAGAGACAAAAAAGTTCTGTGAACAATAGATATTTAATTTTTCATTGTGAAGGGGAGAGCGCAAAAATAACACTAAGTCAAAGCACTTACTCCACAGAATGATCAGCAAACTCAAAACGACCAACAAGGCCAGGTCCTCCAACTCTTGGATGCTGAAATATCATAAGGTTGCAAAGGTAAATGTCAATCAGATAAATTAGATTGTTCAAAGTGAGTGAATGCAGAAAGAGCAGCAAAGCTGTGGTGCCAAGGTTAATGGGATAGGAAGGAAGCAATAATCATGTGCTATCTAACCTGTGGTGCCAAGGTTAAGAACTTGTACGTATCCAAAGCATATCGTACCAAAGCTTCATTCTCACCGGGGTTTATCGTACAGCTGGCAGTGTAAAAGTATTACACAAAAACTTCAGTTGAATATACTGACAACAAAATTCAGAATAATTTGATCTAAAAAAAATAAAAAATAAAAAAGTAAACTAGAAGCAGAAAATTTTGGGGTGTGAGCAAAGCCTCGCGAGGAGTATTAGTGGGGTGGATCACAGTATAACGTAATGGGAAGGACCAAACAACCCGTTTATTAAAACAGTTGCCACAAAATTACAAGAGCTCCTGAGTTGATAGCATAATTTAGGGGGAAAATGGATAGCGAGTTTGGCCCAAGTAAAAACATTGAAACGATTAATTTCCCGAACCTCCTCTACGTCGTTATTCCTATCTTAGAAGATCCTATCATCCCTTCCCATTTATTAACTAATAAAATATAGCCATGACTGCGAGATCTCAAAGAATGTTCTTTGAAGGGTGGCAACTATTTTAGTTCAAAAGCAGACGTTCTATCCAAATTGCATTAACTTGTGGCACACAACAAACAAGAAAAAGTATAGTGCTGCATACTCACGTTGAATATACAATGACTCCACCCGGCCGGACTAATTGGACAGCCTGATCAAACATGCGCCTCTGATACTTTGCATGGTGCTTCAACGACGCAAGGGTTTCCTGGCAAAGACAATATATCAATCTCAAGTTTCCAATCATCGAGGCTTTAGTGAATGAATTACACACCAGCATAATTTTGAAAAGAAATTAGATGGTACAAAGCCATTTCTCAACCAAACATTACAGATACACACATAAACATGCATTCAGTTAATCATTGAAGTGATTCTACCTCCCCAGCAAATAGTCGAGGTCTTAAACCGAGGGCCGAGCAAGGAGCGTCAAGAAGGACTCTGTCAAAGCTGTTGGGAGCAAAACCTTTCGAGTTTTCAGCTCTACCGCCCATGCATTGATTTCTTCCTGGACCATTTCGTGGTCTCTTACCATTGTTCCTCCCTTCAGCTTCATTAACAAAAGTTCTCTCATTCAGTTTTCCCACAGTCGATTAAAAAAAATATGAAACTGAATTTGCAATCACAGATAGAGAAACACACATATGATGCAGTCAAAGAGGTGAAACTAGAAAGAACAGAACTTTGGAAAATAACAGTTGTACAGATCTCAATCCAAGCTTGCTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACCGTGTTTTCATTGTGACAATTAAAAGAATATTGGGACACAAAAAAAACAAGCCCAAACAAATGTGTAACGAAACTAATTATAGGTCTTCAAGCTAAAGAACAAGACCAAGCTCATTATTACAATGTATATATATATATATATATTAAATCCTAGTCACCAAAGCCCAAAGGGAAGCATTCTTCAGAGNTCAATGTAAGTAATTTTTACGAAGGAAAAGTATAAAAAAGAGTCCAAAAAATAATATTCCTATACCCCAAAAAAAAAAAAAGAATCAAACTACACATTTCCAAACTTGGATAGTCAAGGACTTTCCAAAAGCAATCCTGATGTCAAAGTCTACCTATTTCATTCCACACTTAGAATATAGAATAAGCACGTGTGGAAGATGAATGCTGCATTTTATTCCTTGGATCCCAAGTTCAAACTCCTAGATCTGTAAGAAACTATTCCACAAGGCAGGATTCTATATGTATATATACATAAAACTATAAGTTTTTTAATATGAAACATTGACCAAAAGGGATGGGGAGGAAAGCTAAGAAACTATTAGCCCAGTAGTTTCTAAAAGTTATAAGAATAAAGATAACCTACCATTTTGCTTCCTAATCTTATCAACTTCCAATATTTCGGTAATTGAGGATGGTTTTTCATTGTCAAGATTCATTGAACTGGAACTATCATTCACAACACTGTCGTTGGCATCAACACAAACTGAATCAGAGCTTTTGCAGGAATCAGTCCTTCGATTGACAGATTTCAGAGCATCAAGCTTATAGGTTTTTATACAGCTCAACCCCATTTCAGCAGCCAGTTTCTGAATATTCATCACCTGAACGTGGGTTTGAGAAAGGTTAACAAAGCAAGCAGACCATTGAACTTAATCTACACTTTGGAAGAATAGTTTGCACAGTTTAAATCCAGGATATGAGAAACAGAACGGAATAATTGAAAACATCTTTGTCATATCTCCAAGTTCATAATTCTACCTTATTATGGGACCTATCAGCAGCAATGATCTCCCCTTCATCCTTCATAAGGATGGCAATTGCAGTTGTTTTTCCCCCAGGTGCCGCACACATGTCTAATATGCGTTCACCTTTTTGTGGATCTAAGGTGAAAAATCCAAAAAAGATATCCATTAGGAGGAAATCAAACCATCCATAGTTAGCAAAAGGAAAAACCAAAACAAAACAATGATCAATGTGAACAAAATAAATAGACATAATGGTGACAGTGAGAAAATGACGAGCTGGGAAAATTATATTAATTGTTAAAAAATCCTCATTATAAGTTTTAATCTGCTCAATTGATTTTAACCTCAAAATCGAGTGTCCTTCATGCAAGTACAGGAGATGAGCAATGAGAAACACAAAGCTCAAGACTTGTCTGATACTGGACTGAATGGAAGGAAGACCACCCGGATAGGAAGGTTGATAGCAAAACAGAAACTTTAA

mRNA sequence

ATGGATCGAACCTCTGAACAAGGTATTCTTCGCCAGGTCTTAACCATTCCCTACAAAACCAAGCACAAAACATTCAATAAAATGGGAGAGCGCAAAAATAACACTAAGTCAAAGCACTTACTCCACAGAATGATCAGCAAACTCAAAACGACCAACAAGGCCAGGTCCTCCAACTCTTGGATGCTGAAATATCATAAGGTTGCAAAGAAAGAGCAGCAAAGCTGTGGTGCCAAGGAGATGAGCAATGAGAAACACAAAGCTCAAGACTTGTCTGATACTGGACTGAATGGAAGGAAGACCACCCGGATAGGAAGGTTGATAGCAAAACAGAAACTTTAA

Coding sequence (CDS)

ATGGATCGAACCTCTGAACAAGGTATTCTTCGCCAGGTCTTAACCATTCCCTACAAAACCAAGCACAAAACATTCAATAAAATGGGAGAGCGCAAAAATAACACTAAGTCAAAGCACTTACTCCACAGAATGATCAGCAAACTCAAAACGACCAACAAGGCCAGGTCCTCCAACTCTTGGATGCTGAAATATCATAAGGTTGCAAAGAAAGAGCAGCAAAGCTGTGGTGCCAAGGAGATGAGCAATGAGAAACACAAAGCTCAAGACTTGTCTGATACTGGACTGAATGGAAGGAAGACCACCCGGATAGGAAGGTTGATAGCAAAACAGAAACTTTAA

Protein sequence

MDRTSEQGILRQVLTIPYKTKHKTFNKMGERKNNTKSKHLLHRMISKLKTTNKARSSNSWMLKYHKVAKKEQQSCGAKEMSNEKHKAQDLSDTGLNGRKTTRIGRLIAKQKL

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh01G013170.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013170.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013170.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013170.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G013170	CmaCh01G013170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013170.1:exon:854	CmaCh01G013170.1:exon:854	exon
CmaCh01G013170.1:exon:855	CmaCh01G013170.1:exon:855	exon
CmaCh01G013170.1:exon:856	CmaCh01G013170.1:exon:856	exon
CmaCh01G013170.1:exon:857	CmaCh01G013170.1:exon:857	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013170.1:cds	CmaCh01G013170.1:cds_4	CDS
CmaCh01G013170.1:cds	CmaCh01G013170.1:cds_3	CDS
CmaCh01G013170.1:cds	CmaCh01G013170.1:cds_2	CDS
CmaCh01G013170.1:cds	CmaCh01G013170.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013170.1	CmaCh01G013170.1-protein	polypeptide