CmUC08G142870.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC08G142870.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ty1-copia retrotransposon protein
Location	CmU531Chr08: 529480 .. 530719 (-)
Sequence length	438
RNA-Seq Expression	CmUC08G142870.1
Synteny	CmUC08G142870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGGTATAAATATGAAGGCTTGCTAAAGGGGCTTCTAACTTGTAGATGTGGTGGAAATAGAAACTTTCTCTACAAGCACGCTGCCGCTTGTCCTAATGGGTTCAGGTAACCATGTTCTAATTTTTACTACCTTTCTATTTTAAAATTTTATCATTTTTTTTAATTAAAACGTTTATATTAAGTTAAGGTCCATATTTATTGGATCTAATTAAATTTTTTCCCATTTTGATCCACCGCTCCTTTTTCTTCTTCATATACAATAAGTTTTTCAGAAAAATATACAAACATTTTTTCTACCAGATTTTCTTCCTCTATTTTCTTTTGACACGTTTATGAGCATAGTTTCCGATGGTTCCATTCATTCATCTAGCGAGTGAACGCTTGAGTTGGAAAATTGTGTTAACCTTGGGGAGCAATTGACATTCGCAATTTAGCACCGTGGTCGTGCTGAATTTTGCTTTCAATGTAGTGGTTCTTCCATAGCACAACAACATGACATTTGATTGCAAGAATTTGAAAGAAAAAATATATTTCTTTTATCCCTTTTCTTCCAAATGTCTATTAGAAACGATACGATCCTTCCTGATCTGTCTAAATTGGAGCCACTGGACGGATCAAACTATCGACACTGGTCTCATAAGCTCATATGATTGTCTTCGAGTAACTAGAGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGGTTGCAGATCCAACATAAGCTAGTTGGTGCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGGTGCAAAAATCAGCAAAGATAACTTGAGACACTTTGGAATCCAGGTATGGAGGAGATGATGCGGGTAGAAAAAAAAAATACATTGTTAGCAAATAACTACAGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

mRNA sequence

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

Coding sequence (CDS)

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

Protein sequence

MGKELSHIGSFSNAKRIDYILTSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFMFWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKYKKDLTL

Homology

[Close]

BLAST of CmUC08G142870.1 vs. NCBI nr
Match: XP_016902586.1 (PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-24
Identity = 76/158 (48.10%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 22  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDL 81
           TST SD           S+ VV  D+ K D VAD  KY KDNKT+  HLLNHM+D +FDL
Sbjct: 16  TSTSSDPESS----TGPSTTVVVADQVKKDQVADPEKYAKDNKTVRGHLLNHMSDPMFDL 75

Query: 82  FM---------------------------------FWMMDDKRLWTRFHEYKNLVANVLA 141
           F+                                 F M DDK +  + HEY+NLVANVL+
Sbjct: 76  FVVQKFVKDIWSTLESRYGGDDVARKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLS 135

Query: 142 KVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           + MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 136 EGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 169

[Close]

BLAST of CmUC08G142870.1 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CmUC08G142870.1 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CmUC08G142870.1 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
           NKT+  HLLNHM+D +FDLF+                                 F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

[Close]

BLAST of CmUC08G142870.1 vs. NCBI nr
Match: KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
           NKT+  HLLNHM+D +FDLF+                                 F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

[Close]

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL
Match: A0A1S4E2X9 (uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 76/158 (48.10%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 22  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDL 81
           TST SD           S+ VV  D+ K D VAD  KY KDNKT+  HLLNHM+D +FDL
Sbjct: 16  TSTSSDPESS----TGPSTTVVVADQVKKDQVADPEKYAKDNKTVRGHLLNHMSDPMFDL 75

Query: 82  FM---------------------------------FWMMDDKRLWTRFHEYKNLVANVLA 141
           F+                                 F M DDK +  + HEY+NLVANVL+
Sbjct: 76  FVVQKFVKDIWSTLESRYGGDDVARKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLS 135

Query: 142 KVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           + MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 136 EGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 169

[Close]

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL
Match: A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
           NKT+  HLLNHM+D +FDLF+                                 F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

[Close]

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
           NKT+  HLLNHM+D +FDLF+                                 F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

The following BLAST results are available for this feature:

BLAST of CmUC08G142870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902586.1	8.8e-24	48.10	PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo]	[more]
KAA0040554.1	2.6e-23	42.70	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05597.1	2.6e-23	42.70	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	3.4e-23	42.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051006.1	3.4e-23	42.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC08G142870.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E2X9	4.3e-24	48.10	uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=...	[more]
A0A5D3C1A6	1.2e-23	42.70	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TAR9	1.2e-23	42.70	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U9X9	1.6e-23	42.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZI1	1.6e-23	42.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CmUC08G142870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 53..142
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 53..142

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC08G142870	CmUC08G142870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC08G142870.1-exon	CmUC08G142870.1-exon-CmU531Chr08:529480..529668	exon
CmUC08G142870.1-exon	CmUC08G142870.1-exon-CmU531Chr08:529771..529872	exon
CmUC08G142870.1-exon	CmUC08G142870.1-exon-CmU531Chr08:529906..530004	exon
CmUC08G142870.1-exon	CmUC08G142870.1-exon-CmU531Chr08:530672..530719	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC08G142870.1-cds	CmUC08G142870.1-cds-CmU531Chr08:529480..529668	CDS
CmUC08G142870.1-cds	CmUC08G142870.1-cds-CmU531Chr08:529771..529872	CDS
CmUC08G142870.1-cds	CmUC08G142870.1-cds-CmU531Chr08:529906..530004	CDS
CmUC08G142870.1-cds	CmUC08G142870.1-cds-CmU531Chr08:530672..530719	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC08G142870.1	CmUC08G142870.1-protein	polypeptide