Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGGTATAAATATGAAGGCTTGCTAAAGGGGCTTCTAACTTGTAGATGTGGTGGAAATAGAAACTTTCTCTACAAGCACGCTGCCGCTTGTCCTAATGGGTTCAGGTAACCATGTTCTAATTTTTACTACCTTTCTATTTTAAAATTTTATCATTTTTTTTAATTAAAACGTTTATATTAAGTTAAGGTCCATATTTATTGGATCTAATTAAATTTTTTCCCATTTTGATCCACCGCTCCTTTTTCTTCTTCATATACAATAAGTTTTTCAGAAAAATATACAAACATTTTTTCTACCAGATTTTCTTCCTCTATTTTCTTTTGACACGTTTATGAGCATAGTTTCCGATGGTTCCATTCATTCATCTAGCGAGTGAACGCTTGAGTTGGAAAATTGTGTTAACCTTGGGGAGCAATTGACATTCGCAATTTAGCACCGTGGTCGTGCTGAATTTTGCTTTCAATGTAGTGGTTCTTCCATAGCACAACAACATGACATTTGATTGCAAGAATTTGAAAGAAAAAATATATTTCTTTTATCCCTTTTCTTCCAAATGTCTATTAGAAACGATACGATCCTTCCTGATCTGTCTAAATTGGAGCCACTGGACGGATCAAACTATCGACACTGGTCTCATAAGCTCATATGATTGTCTTCGAGTAACTAGAGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGGTTGCAGATCCAACATAAGCTAGTTGGTGCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGGTGCAAAAATCAGCAAAGATAACTTGAGACACTTTGGAATCCAGGTATGGAGGAGATGATGCGGGTAGAAAAAAAAAATACATTGTTAGCAAATAACTACAGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG
mRNA sequence
ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG
Coding sequence (CDS)
ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG
Protein sequence
MGKELSHIGSFSNAKRIDYILTSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFMFWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKYKKDLTL
Homology
BLAST of CmUC08G142870 vs. NCBI nr
Match:
XP_016902586.1 (PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo])
HSP 1 Score: 120.9 bits (302), Expect = 8.8e-24
Identity = 76/158 (48.10%), Postives = 89/158 (56.33%), Query Frame = 0
Query: 22 TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDL 81
TST SD S+ VV D+ K D VAD KY KDNKT+ HLLNHM+D +FDL
Sbjct: 16 TSTSSDPESS----TGPSTTVVVADQVKKDQVADPEKYAKDNKTVRGHLLNHMSDPMFDL 75
Query: 82 FM---------------------------------FWMMDDKRLWTRFHEYKNLVANVLA 141
F+ F M DDK + + HEY+NLVANVL+
Sbjct: 76 FVVQKFVKDIWSTLESRYGGDDVARKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLS 135
Query: 142 KVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
+ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 136 EGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 169
BLAST of CmUC08G142870 vs. NCBI nr
Match:
KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 119.4 bits (298), Expect = 2.6e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0
Query: 11 FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
F +DYILT+ T D +SS+++ ++ K D V D KY K
Sbjct: 34 FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93
Query: 71 DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
DNKT+ HLLNHM+D +FDLF+ F M D
Sbjct: 94 DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153
Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
DK + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211
BLAST of CmUC08G142870 vs. NCBI nr
Match:
TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 119.4 bits (298), Expect = 2.6e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0
Query: 11 FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
F +DYILT+ T D +SS+++ ++ K D V D KY K
Sbjct: 34 FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93
Query: 71 DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
DNKT+ HLLNHM+D +FDLF+ F M D
Sbjct: 94 DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153
Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
DK + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211
BLAST of CmUC08G142870 vs. NCBI nr
Match:
TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0
Query: 11 FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
F +DY+LT+ T + D + V D+ K D V D KY KD
Sbjct: 34 FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93
Query: 71 NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
NKT+ HLLNHM+D +FDLF+ F M DD
Sbjct: 94 NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153
Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
K + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210
BLAST of CmUC08G142870 vs. NCBI nr
Match:
KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0
Query: 11 FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
F +DY+LT+ T + D + V D+ K D V D KY KD
Sbjct: 34 FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93
Query: 71 NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
NKT+ HLLNHM+D +FDLF+ F M DD
Sbjct: 94 NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153
Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
K + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210
BLAST of CmUC08G142870 vs. ExPASy TrEMBL
Match:
A0A1S4E2X9 (uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 76/158 (48.10%), Postives = 89/158 (56.33%), Query Frame = 0
Query: 22 TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDL 81
TST SD S+ VV D+ K D VAD KY KDNKT+ HLLNHM+D +FDL
Sbjct: 16 TSTSSDPESS----TGPSTTVVVADQVKKDQVADPEKYAKDNKTVRGHLLNHMSDPMFDL 75
Query: 82 FM---------------------------------FWMMDDKRLWTRFHEYKNLVANVLA 141
F+ F M DDK + + HEY+NLVANVL+
Sbjct: 76 FVVQKFVKDIWSTLESRYGGDDVARKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLS 135
Query: 142 KVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
+ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 136 EGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 169
BLAST of CmUC08G142870 vs. ExPASy TrEMBL
Match:
A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0
Query: 11 FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
F +DYILT+ T D +SS+++ ++ K D V D KY K
Sbjct: 34 FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93
Query: 71 DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
DNKT+ HLLNHM+D +FDLF+ F M D
Sbjct: 94 DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153
Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
DK + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211
BLAST of CmUC08G142870 vs. ExPASy TrEMBL
Match:
A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 0
Query: 11 FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
F +DYILT+ T D +SS+++ ++ K D V D KY K
Sbjct: 34 FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93
Query: 71 DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
DNKT+ HLLNHM+D +FDLF+ F M D
Sbjct: 94 DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153
Query: 131 DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
DK + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211
BLAST of CmUC08G142870 vs. ExPASy TrEMBL
Match:
A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0
Query: 11 FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
F +DY+LT+ T + D + V D+ K D V D KY KD
Sbjct: 34 FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93
Query: 71 NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
NKT+ HLLNHM+D +FDLF+ F M DD
Sbjct: 94 NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153
Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
K + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210
BLAST of CmUC08G142870 vs. ExPASy TrEMBL
Match:
A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 75/177 (42.37%), Postives = 92/177 (51.98%), Query Frame = 0
Query: 11 FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
F +DY+LT+ T + D + V D+ K D V D KY KD
Sbjct: 34 FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93
Query: 71 NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
NKT+ HLLNHM+D +FDLF+ F M DD
Sbjct: 94 NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153
Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
K + + HEY+NLVANVL++ MKMCEILQAN L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_016902586.1 | 8.8e-24 | 48.10 | PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo] | [more] |
KAA0040554.1 | 2.6e-23 | 42.70 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK05597.1 | 2.6e-23 | 42.70 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK04394.1 | 3.4e-23 | 42.37 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0051006.1 | 3.4e-23 | 42.37 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S4E2X9 | 4.3e-24 | 48.10 | uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=... | [more] |
A0A5D3C1A6 | 1.2e-23 | 42.70 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TAR9 | 1.2e-23 | 42.70 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7U9X9 | 1.6e-23 | 42.37 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3BZI1 | 1.6e-23 | 42.37 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |