CmUC04G076220.1 (mRNA) Watermelon (USVL531) v1

Overview
NameCmUC04G076220.1
TypemRNA
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr04: 22703301 .. 22705430 (+)
Sequence length612
RNA-Seq ExpressionCmUC04G076220.1
SyntenyCmUC04G076220.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGAAGAATTTCTTCAGTACTAGGCATACTAGTTTTCACCATCGGATGTAATAGAGAAAAGTACCTTGAGTTTACTTCCATTAATTATTAATCAACAGGCAAATTTTTTAATCTACATCAATTGTGATTATGAGACAACTACATTATAACGGTCTTGTTAAGTAATCCGTCTATGTATTGTGCAATGTGAAACAATGAAATAGTTGATCCCCATTTAACATTTCAATTAGTCTATCTTGGATAAATTCTTCATGATCACACATGCTACACACAATCAAACCTTTGAATCCCAATTCCCACCTCACAAAACTATACTTTAACTTAAGACTGAATCAAACATATCCACTTCAACTACACTTTAATTAAGATTACCAATCAAAGAGTAAACACAAGAATTACAAAGAAGTTATAAAGTCAACAGCTTCAAGGACCCCAAAAGAAGGCCCAAGCCCCTGCCGTTTTCTACGCATTGGCTCGAATACAACATGGAGGGCATGTGTTCAACAAACCCAACCTCTACTACTTTTTGAGTATCAACCCGTTTGATAGCAGAGTAATAAATAACCAACCAACAAGCTAAAATTTCAAACAATTTGATTTTGTGGACTGTCAACAACAATAAACAACAACCAACGGCCCAAAAGAAAACGCAATGTCATCATTCAGGCATTTCATCGAACACGTTGTGGGCATTAAAAGAAGAACCAGGGCAAAAACAACAAACCATGGTTAAAGGGAAAGTTGGTCTCGATATCAACTGTTGACTGGTTGAAATCGTGAATAACGATGAGAAATTTTTTTAAAAAGATAGGGGGGATTGGGTAGGGAGACCGAAATACCTCGAAAGGAGAAAATAGAAGTTTCTGTGCGAGGGCTTTGTCGGGTGCCCCAGCCCCATTGATGGGTAATTAGTAAAGTAAAAGACATTGATAATCGCAGCAAAGCAAACCCCACTTGCAGTTGGTGGGATTGATTAATTAAAGAAAAGGCAAAAGAAGCGTAGGGTTTAGCAGCGAGTGCGAGCGTGGGCGTGTCTGTCTTAAGAAACTAATCAAATGCCTGCGCCGGCACCGCCTACGCTGCTGCTGCTTCCCCCCACCCTAAACTCTGTTCCTTCCCATGTGCCCAACTACGCATATTAATTTAATTAATTAATGGCTTCTTAATGTTAACAATTATTAATTATTAAATAAAGTAGGAGAAGATTGACTACAAATATCTTGACCATTTGGACCATGATGATTTTGTCTAATGTAACAAAAATATATATATTTTTTAATTCTATTAAGTAATGGTTGGAAACATAAATTTTATAAGTGGCTCAATTTAGATCCTTCATTTTTTTATTTAAAATTATATTTTTATTCTATTCTATTTAAAAATCAGCTAAAATTACCCAAATAAAATTACCCAATTCCCAAAAATCCCACCAAAGTAAAAAGAATTAAAATAAAATAAAAGATTGTCACAAAATAAAGAAAGACGATAAGATTACAAATTGATTAAATTGTAAACTAGACTATATAGTTTAGAGAAAATTAGAATTTAGTTTCTATAATTTGATAAAAATCTTACAAAAAGGTCATACTAGGATTATATATGAGAACTTTATCCAACCACAAGAACTATTTATGAGATGTTATCAAAACATATGGTCTAAATTATTCTAAATTATATGGACTAAATTTATAGTTAAACCTTCAAAATCTTTTAAAATTTTATTTTTTTTAATTTTCACTCATCTTTGCAATTAAAAAAAAAGAAGTATACATTTGTAAAATTTACGTATTCAGGACTTTAAAATAAAATTCTAATAGATAAGATTAAATTAATTTACTTATAAATTGAATTTTGTTTCCATTAGTAAGGTTGATGGAAAATGTGTTTGGGGAAATGATGATTGGTGGGAAAGTGGAGGAAGGAGAAAAGAGTAAAAAGGGAGAAAAAAACGACAAGTCGGCAATGATCGATAAAAAGGGAAACGCAGCATCGACATAAGAAGCCAACAGATTCCGAGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCCTCCTACACGTGGCCAGTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCCACAAAGTAGGAGGAGGGAAGTAA

mRNA sequence

ATGTCCGAAGAATTTCTTCATCAACAGCTTCAAGGACCCCAAAAGAAGGCCCAAGCCCCTGCCGTTTTCTACGCATTGGCTCGAATACAACATGGAGGGCATGTGTTCAACAAACCCAACCTCTACTACTTTTTGAGTATCAACCCGTTTGATAGCAGAAAAACGCAATGTCATCATTCAGGCATTTCATCGAACACGTTGTGGGCATTAAAAGAAGAACCAGGGCAAAAACAACAAACCATGGTTAAAGGGAAAGGAGACCGAAATACCTCGAAAGGAGAAAATAGAAGTTTCTGTGCGAGGGCTTTGTCGGGTGCCCCAGCCCCATTGATGGAAACTAATCAAATGCCTGCGCCGGCACCGCCTACGCTGCTGCTGCTTCCCCCCACCCTAAACTCTGTTCCTTCCCATGTTGATGGAAAATGTGTTTGGGGAAATGATGATTGGTGGGAAAGTGGAGGAAGGAGAAAAGACATCGACATAAGAAGCCAACAGATTCCGAGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCCTCCTACACGTGGCCAGTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCCACAAAGTAGGAGGAGGGAAGTAA

Coding sequence (CDS)

ATGTCCGAAGAATTTCTTCATCAACAGCTTCAAGGACCCCAAAAGAAGGCCCAAGCCCCTGCCGTTTTCTACGCATTGGCTCGAATACAACATGGAGGGCATGTGTTCAACAAACCCAACCTCTACTACTTTTTGAGTATCAACCCGTTTGATAGCAGAAAAACGCAATGTCATCATTCAGGCATTTCATCGAACACGTTGTGGGCATTAAAAGAAGAACCAGGGCAAAAACAACAAACCATGGTTAAAGGGAAAGGAGACCGAAATACCTCGAAAGGAGAAAATAGAAGTTTCTGTGCGAGGGCTTTGTCGGGTGCCCCAGCCCCATTGATGGAAACTAATCAAATGCCTGCGCCGGCACCGCCTACGCTGCTGCTGCTTCCCCCCACCCTAAACTCTGTTCCTTCCCATGTTGATGGAAAATGTGTTTGGGGAAATGATGATTGGTGGGAAAGTGGAGGAAGGAGAAAAGACATCGACATAAGAAGCCAACAGATTCCGAGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCCTCCTACACGTGGCCAGTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCCACAAAGTAGGAGGAGGGAAGTAA

Protein sequence

MSEEFLHQQLQGPQKKAQAPAVFYALARIQHGGHVFNKPNLYYFLSINPFDSRKTQCHHSGISSNTLWALKEEPGQKQQTMVKGKGDRNTSKGENRSFCARALSGAPAPLMETNQMPAPAPPTLLLLPPTLNSVPSHVDGKCVWGNDDWWESGGRRKDIDIRSQQIPRRNKWKRKAEVGPSYTWPVNAKVVRSSGTHKVGGGK
Homology
[Close]
BLAST of CmUC04G076220.1 vs. NCBI nr
Match: KGN48156.1 (hypothetical protein Csa_004099 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 155 RRKDIDIRSQQIPRRNKWKRKAEVGPSYTWPVNAKVVRSSGT 197
           R + ID+ SQQI  RNKWKRKAEVGPSYTWP+NAKVVRSSGT
Sbjct: 6   RERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGT 47

[Close]
BLAST of CmUC04G076220.1 vs. ExPASy TrEMBL
Match: A0A0A0KK67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 155 RRKDIDIRSQQIPRRNKWKRKAEVGPSYTWPVNAKVVRSSGT 197
           R + ID+ SQQI  RNKWKRKAEVGPSYTWP+NAKVVRSSGT
Sbjct: 6   RERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGT 47

The following BLAST results are available for this feature:
BLAST of CmUC04G076220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48156.11.0e-0980.95hypothetical protein Csa_004099 [Cucumis sativus][more]
BLAST of CmUC04G076220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC04G076220.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK674.9e-1080.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1[more]
BLAST of CmUC04G076220.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..94

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmUC04G076220CmUC04G076220gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22703301..22703320exon
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22703719..22703857exon
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22703949..22704044exon
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22704130..22704208exon
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22704349..22704425exon
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22705173..22705234exon
CmUC04G076220.1-exonCmUC04G076220.1-exon-CmU531Chr04:22705292..22705430exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22703301..22703320CDS
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22703719..22703857CDS
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22703949..22704044CDS
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22704130..22704208CDS
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22704349..22704425CDS
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22705173..22705234CDS
CmUC04G076220.1-cdsCmUC04G076220.1-cds-CmU531Chr04:22705292..22705430CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmUC04G076220.1CmUC04G076220.1-proteinpolypeptide