CmUC04G076220 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC04G076220
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr04: 22703301 .. 22705430 (+)
RNA-Seq Expression	CmUC04G076220
Synteny	CmUC04G076220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGAAGAATTTCTTCAGTACTAGGCATACTAGTTTTCACCATCGGATGTAATAGAGAAAAGTACCTTGAGTTTACTTCCATTAATTATTAATCAACAGGCAAATTTTTTAATCTACATCAATTGTGATTATGAGACAACTACATTATAACGGTCTTGTTAAGTAATCCGTCTATGTATTGTGCAATGTGAAACAATGAAATAGTTGATCCCCATTTAACATTTCAATTAGTCTATCTTGGATAAATTCTTCATGATCACACATGCTACACACAATCAAACCTTTGAATCCCAATTCCCACCTCACAAAACTATACTTTAACTTAAGACTGAATCAAACATATCCACTTCAACTACACTTTAATTAAGATTACCAATCAAAGAGTAAACACAAGAATTACAAAGAAGTTATAAAGTCAACAGCTTCAAGGACCCCAAAAGAAGGCCCAAGCCCCTGCCGTTTTCTACGCATTGGCTCGAATACAACATGGAGGGCATGTGTTCAACAAACCCAACCTCTACTACTTTTTGAGTATCAACCCGTTTGATAGCAGAGTAATAAATAACCAACCAACAAGCTAAAATTTCAAACAATTTGATTTTGTGGACTGTCAACAACAATAAACAACAACCAACGGCCCAAAAGAAAACGCAATGTCATCATTCAGGCATTTCATCGAACACGTTGTGGGCATTAAAAGAAGAACCAGGGCAAAAACAACAAACCATGGTTAAAGGGAAAGTTGGTCTCGATATCAACTGTTGACTGGTTGAAATCGTGAATAACGATGAGAAATTTTTTTAAAAAGATAGGGGGGATTGGGTAGGGAGACCGAAATACCTCGAAAGGAGAAAATAGAAGTTTCTGTGCGAGGGCTTTGTCGGGTGCCCCAGCCCCATTGATGGGTAATTAGTAAAGTAAAAGACATTGATAATCGCAGCAAAGCAAACCCCACTTGCAGTTGGTGGGATTGATTAATTAAAGAAAAGGCAAAAGAAGCGTAGGGTTTAGCAGCGAGTGCGAGCGTGGGCGTGTCTGTCTTAAGAAACTAATCAAATGCCTGCGCCGGCACCGCCTACGCTGCTGCTGCTTCCCCCCACCCTAAACTCTGTTCCTTCCCATGTGCCCAACTACGCATATTAATTTAATTAATTAATGGCTTCTTAATGTTAACAATTATTAATTATTAAATAAAGTAGGAGAAGATTGACTACAAATATCTTGACCATTTGGACCATGATGATTTTGTCTAATGTAACAAAAATATATATATTTTTTAATTCTATTAAGTAATGGTTGGAAACATAAATTTTATAAGTGGCTCAATTTAGATCCTTCATTTTTTTATTTAAAATTATATTTTTATTCTATTCTATTTAAAAATCAGCTAAAATTACCCAAATAAAATTACCCAATTCCCAAAAATCCCACCAAAGTAAAAAGAATTAAAATAAAATAAAAGATTGTCACAAAATAAAGAAAGACGATAAGATTACAAATTGATTAAATTGTAAACTAGACTATATAGTTTAGAGAAAATTAGAATTTAGTTTCTATAATTTGATAAAAATCTTACAAAAAGGTCATACTAGGATTATATATGAGAACTTTATCCAACCACAAGAACTATTTATGAGATGTTATCAAAACATATGGTCTAAATTATTCTAAATTATATGGACTAAATTTATAGTTAAACCTTCAAAATCTTTTAAAATTTTATTTTTTTTAATTTTCACTCATCTTTGCAATTAAAAAAAAAGAAGTATACATTTGTAAAATTTACGTATTCAGGACTTTAAAATAAAATTCTAATAGATAAGATTAAATTAATTTACTTATAAATTGAATTTTGTTTCCATTAGTAAGGTTGATGGAAAATGTGTTTGGGGAAATGATGATTGGTGGGAAAGTGGAGGAAGGAGAAAAGAGTAAAAAGGGAGAAAAAAACGACAAGTCGGCAATGATCGATAAAAAGGGAAACGCAGCATCGACATAAGAAGCCAACAGATTCCGAGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCCTCCTACACGTGGCCAGTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCCACAAAGTAGGAGGAGGGAAGTAA

mRNA sequence

ATGTCCGAAGAATTTCTTCATCAACAGCTTCAAGGACCCCAAAAGAAGGCCCAAGCCCCTGCCGTTTTCTACGCATTGGCTCGAATACAACATGGAGGGCATGTGTTCAACAAACCCAACCTCTACTACTTTTTGAGTATCAACCCGTTTGATAGCAGAAAAACGCAATGTCATCATTCAGGCATTTCATCGAACACGTTGTGGGCATTAAAAGAAGAACCAGGGCAAAAACAACAAACCATGGTTAAAGGGAAAGGAGACCGAAATACCTCGAAAGGAGAAAATAGAAGTTTCTGTGCGAGGGCTTTGTCGGGTGCCCCAGCCCCATTGATGGAAACTAATCAAATGCCTGCGCCGGCACCGCCTACGCTGCTGCTGCTTCCCCCCACCCTAAACTCTGTTCCTTCCCATGTTGATGGAAAATGTGTTTGGGGAAATGATGATTGGTGGGAAAGTGGAGGAAGGAGAAAAGACATCGACATAAGAAGCCAACAGATTCCGAGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCCTCCTACACGTGGCCAGTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCCACAAAGTAGGAGGAGGGAAGTAA

Coding sequence (CDS)

ATGTCCGAAGAATTTCTTCATCAACAGCTTCAAGGACCCCAAAAGAAGGCCCAAGCCCCTGCCGTTTTCTACGCATTGGCTCGAATACAACATGGAGGGCATGTGTTCAACAAACCCAACCTCTACTACTTTTTGAGTATCAACCCGTTTGATAGCAGAAAAACGCAATGTCATCATTCAGGCATTTCATCGAACACGTTGTGGGCATTAAAAGAAGAACCAGGGCAAAAACAACAAACCATGGTTAAAGGGAAAGGAGACCGAAATACCTCGAAAGGAGAAAATAGAAGTTTCTGTGCGAGGGCTTTGTCGGGTGCCCCAGCCCCATTGATGGAAACTAATCAAATGCCTGCGCCGGCACCGCCTACGCTGCTGCTGCTTCCCCCCACCCTAAACTCTGTTCCTTCCCATGTTGATGGAAAATGTGTTTGGGGAAATGATGATTGGTGGGAAAGTGGAGGAAGGAGAAAAGACATCGACATAAGAAGCCAACAGATTCCGAGAAGAAACAAATGGAAAAGGAAAGCTGAGGTGGGACCCTCCTACACGTGGCCAGTGAATGCCAAAGTGGTGAGGTCAAGTGGGACCCACAAAGTAGGAGGAGGGAAGTAA

Protein sequence

MSEEFLHQQLQGPQKKAQAPAVFYALARIQHGGHVFNKPNLYYFLSINPFDSRKTQCHHSGISSNTLWALKEEPGQKQQTMVKGKGDRNTSKGENRSFCARALSGAPAPLMETNQMPAPAPPTLLLLPPTLNSVPSHVDGKCVWGNDDWWESGGRRKDIDIRSQQIPRRNKWKRKAEVGPSYTWPVNAKVVRSSGTHKVGGGK

Homology

[Close]

BLAST of CmUC04G076220 vs. NCBI nr
Match: KGN48156.1 (hypothetical protein Csa_004099 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 155 RRKDIDIRSQQIPRRNKWKRKAEVGPSYTWPVNAKVVRSSGT 197
           R + ID+ SQQI  RNKWKRKAEVGPSYTWP+NAKVVRSSGT
Sbjct: 6   RERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGT 47

[Close]

BLAST of CmUC04G076220 vs. ExPASy TrEMBL
Match: A0A0A0KK67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 155 RRKDIDIRSQQIPRRNKWKRKAEVGPSYTWPVNAKVVRSSGT 197
           R + ID+ SQQI  RNKWKRKAEVGPSYTWP+NAKVVRSSGT
Sbjct: 6   RERSIDVTSQQIRGRNKWKRKAEVGPSYTWPLNAKVVRSSGT 47

The following BLAST results are available for this feature:

BLAST of CmUC04G076220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48156.1	1.0e-09	80.95	hypothetical protein Csa_004099 [Cucumis sativus]	[more]

BLAST of CmUC04G076220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC04G076220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK67	4.9e-10	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445200 PE=4 SV=1	[more]

BLAST of CmUC04G076220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC04G076220.1	CmUC04G076220.1	mRNA