CmUC01G011000.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC01G011000.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	CmU531Chr01: 16866193 .. 16866393 (-)
Sequence length	201
RNA-Seq Expression	CmUC01G011000.1
Synteny	CmUC01G011000.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCCAAGTGCTTGCAGCCATGCTGATCTTGTTGACAAGGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATGTATGGGGGCTGTGGTGGACTTTTTTGGTGA

mRNA sequence

ATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCCAAGTGCTTGCAGCCATGCTGATCTTGTTGACAAGGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATGTATGGGGGCTGTGGTGGACTTTTTTGGTGA

Coding sequence (CDS)

ATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCCAAGTGCTTGCAGCCATGCTGATCTTGTTGACAAGGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATGTATGGGGGCTGTGGTGGACTTTTTTGGTGA

Protein sequence

MMAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLFW

Homology

[Close]

BLAST of CmUC01G011000.1 vs. NCBI nr
Match: XP_008450527.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450530.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450531.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450532.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >KAA0050956.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK10303.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           A+KLFDEMVQSGI PDRIVFM V S CSHA LVD+ L+YFRSM+ DYN NPDQE+Y
Sbjct: 396 AVKLFDEMVQSGIQPDRIVFMGVLSGCSHAGLVDRGLKYFRSMLEDYNINPDQEIY 451

[Close]

BLAST of CmUC01G011000.1 vs. NCBI nr
Match: XP_023891648.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Quercus suber])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG 60
           A++LFD+M++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN  PDQE+YG
Sbjct: 396 AVELFDKMIRSGIRPDKIVYMAVLSACSHAGLVDEGLRYFKSMVGDYNITPDQEIYG 452

[Close]

BLAST of CmUC01G011000.1 vs. NCBI nr
Match: KAG6588590.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 4   MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG 60
           +KLFDEMV+SGI PDRIVFMAV SACSHA LV+K L YFRSMV DYN NPD E+YG
Sbjct: 371 IKLFDEMVRSGIQPDRIVFMAVLSACSHAGLVNKGLSYFRSMVEDYNLNPDHEIYG 426

[Close]

BLAST of CmUC01G011000.1 vs. NCBI nr
Match: XP_011659402.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus] >XP_031746026.1 putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           A+KLFDEMVQSGI PDRIVFM V   CSHA LVDK L+YFRSM+ DYN NPDQE+Y
Sbjct: 396 AVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIY 451

[Close]

BLAST of CmUC01G011000.1 vs. NCBI nr
Match: RVW39116.1 (putative pentatricopeptide repeat-containing protein [Vitis vinifera])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG 60
           A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Sbjct: 366 AVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYG 422

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy Swiss-Prot
Match: Q9FXA9 (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           A++LFD+MV SGI PDRIVFMAV SAC HA LV+K L+YF  M  +Y  NPD+++Y
Sbjct: 399 AVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIY 454

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy Swiss-Prot
Match: Q9CAY1 (Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-08
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           + + LFD+M++ GI PD  VF+ V SACSH+ L DK L  FR+M  +Y   P  E Y
Sbjct: 341 IGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY 397

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy Swiss-Prot
Match: Q9STE1 (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E36 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-08
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 6   LFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGL 65
           LF EMV+ SGI PD+I F+ + S+C H   VD+ +R+FRSM  DY   P QE Y     L
Sbjct: 630 LFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDL 689

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy Swiss-Prot
Match: Q9SMZ2 (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 4   MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           ++LF +M   GI PD++ F+ V SACSH+ LV +  ++ RSM GDY   P+ E Y
Sbjct: 704 LQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCG 62
           A+K+F +M    + P+ + F++V +AC+HA LVD+  R +RSM+ DY+   + E YGG  
Sbjct: 372 ALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMV 431

Query: 63  GLF 66
            LF
Sbjct: 432 HLF 434

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy TrEMBL
Match: A0A1S3BQ30 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103492105 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           A+KLFDEMVQSGI PDRIVFM V S CSHA LVD+ L+YFRSM+ DYN NPDQE+Y
Sbjct: 396 AVKLFDEMVQSGIQPDRIVFMGVLSGCSHAGLVDRGLKYFRSMLEDYNINPDQEIY 451

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy TrEMBL
Match: A0A5D3CEL5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004550 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           A+KLFDEMVQSGI PDRIVFM V S CSHA LVD+ L+YFRSM+ DYN NPDQE+Y
Sbjct: 396 AVKLFDEMVQSGIQPDRIVFMGVLSGCSHAGLVDRGLKYFRSMLEDYNINPDQEIY 451

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy TrEMBL
Match: A0A438DUD8 (Putative pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=PCMP-E64_18 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG 60
           A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Sbjct: 366 AVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYG 422

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy TrEMBL
Match: A0A438IM61 (Putative pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=PCMP-E64_15 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG 60
           A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Sbjct: 396 AVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYG 452

[Close]

BLAST of CmUC01G011000.1 vs. ExPASy TrEMBL
Match: F6I4U5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00870 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG 60
           A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Sbjct: 396 AVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYG 452

[Close]

BLAST of CmUC01G011000.1 vs. TAIR 10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 3   AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           A++LFD+MV SGI PDRIVFMAV SAC HA LV+K L+YF  M  +Y  NPD+++Y
Sbjct: 399 AVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIY 454

[Close]

BLAST of CmUC01G011000.1 vs. TAIR 10
Match: AT3G11460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           + + LFD+M++ GI PD  VF+ V SACSH+ L DK L  FR+M  +Y   P  E Y
Sbjct: 341 IGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY 397

[Close]

BLAST of CmUC01G011000.1 vs. TAIR 10
Match: AT4G21300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 6   LFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGL 65
           LF EMV+ SGI PD+I F+ + S+C H   VD+ +R+FRSM  DY   P QE Y     L
Sbjct: 630 LFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDL 689

[Close]

BLAST of CmUC01G011000.1 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-09
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 3    AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCG 62
            A+K+F +M    + P+ + F++V +AC+HA LVD+  R +RSM+ DY+   + E YGG  
Sbjct: 1117 ALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMV 1176

Query: 63   GLF 66
             LF
Sbjct: 1177 HLF 1179

[Close]

BLAST of CmUC01G011000.1 vs. TAIR 10
Match: AT4G33170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-09
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 4   MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY 59
           ++LF +M   GI PD++ F+ V SACSH+ LV +  ++ RSM GDY   P+ E Y
Sbjct: 704 LQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758

The following BLAST results are available for this feature:

BLAST of CmUC01G011000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450527.1	2.6e-15	76.79	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum...	[more]
XP_023891648.1	4.5e-15	71.93	putative pentatricopeptide repeat-containing protein At1g56570 [Quercus suber]	[more]
KAG6588590.1	4.5e-15	78.57	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_011659402.1	4.5e-15	76.79	putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus]...	[more]
RVW39116.1	4.5e-15	71.93	putative pentatricopeptide repeat-containing protein [Vitis vinifera]	[more]

BLAST of CmUC01G011000.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FXA9	1.5e-13	62.50	Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th...	[more]
Q9CAY1	4.2e-08	47.37	Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS...	[more]
Q9STE1	4.2e-08	49.18	Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX...	[more]
Q9SMZ2	1.2e-07	45.45	Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX...	[more]
Q56X05	1.2e-07	41.27	Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmUC01G011000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQ30	1.3e-15	76.79	putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo O...	[more]
A0A5D3CEL5	1.3e-15	76.79	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A438DUD8	2.2e-15	71.93	Putative pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 ...	[more]
A0A438IM61	2.2e-15	71.93	Putative pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 ...	[more]
F6I4U5	2.2e-15	71.93	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00870 PE=4 SV=...	[more]

BLAST of CmUC01G011000.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56570.1	1.1e-14	62.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G11460.1	3.0e-09	47.37	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21300.1	3.0e-09	49.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G06150.1	8.7e-09	41.27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G33170.1	8.7e-09	45.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..60 e-value: 2.6E-9 score: 38.9
None	No IPR available	PANTHER	PTHR47929:SF16	SUBFAMILY NOT NAMED	coord: 3..60
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 3..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC01G011000	CmUC01G011000	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G011000.1-exon	CmUC01G011000.1-exon-CmU531Chr01:16866193..16866393	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G011000.1-cds	CmUC01G011000.1-cds-CmU531Chr01:16866193..16866393	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC01G011000.1	CmUC01G011000.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding