Clc08G16690.2 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc08G16690.2
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 27132158 .. 27136998 (-)
Sequence length519
RNA-Seq ExpressionClc08G16690.2
SyntenyClc08G16690.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGTCGGCTCCACCAAACAGTTGCAACAAAAACCGGATTGACCAAGAAAGGCGTTGACCAGCTATGTTAGTTCAATTGGAGTTCATACACTAAACACCAATTCTCCATTAAAATCCAAATTCATCGATTTTACCTAACCATTGTTATTGCTTATGCCAAATCAGTCAAGGGTTATTGCAATTTGCAATCGCATAGCTGTTCCTCGATCTTTGATCCTACTTCCCAACTTCACAATCTGTTCATCAACTATCTCAATTCTCAAAATGGTTAGTTCTTATAATCTCATCTTATGCTGTTTCGTTCTGTTTCCATGTAATAGAGCCACAAGGGGCATTGACTGAATCCTTCTGTACTTCACAAAGTGACAAGCCTATTACATTTGTTCTTATCTTCTACATCTTCCCCCTTGTATTGACTAATATAATTCTTTTTCATTCTTGTTTATCTCATGTTCTCGAATGTATTAAAATAGGAATCCCGAAGAGTCATTTATGTTGGTGTCTCTTCCGCAGGACTGTGTCGTTGCCGAATTATTGGGCATGAGAAATTTTGTTGGCTGCTTGTGATATCTTATTTGAATCAAATTTATACATTAAGCATCTGATTTGACTCGAAAAACTCTCCTACACGAGCCGTTCAATGGTCATCCTTTATAATATTCATCCGGGTCCCACGTACATTGACAGAACATTTTGAAATATGATACGTTGGGTTTTGTTTGTTTATTTATTTTTATTTTTATAATGGGTATCCAGCTTCCTTACTAGATTGTCTTATAATTGTGTTTCTGGATGCTTTTCCAGACGTGGTCTTATGTACTTCATCGAGTTTCCCCAGATAAACTTTTGTTTGGTCAAAGCAATTGATCAGGAAACGTTGTACCATACACTTTTTAGTCTTTTGGCATTGCTCTATTCTATCTTGTAAGATTGTTATAGATGCTTCTGGCGTGTTAACGGTTGTGATTTTGTTAAAAACATAAGTTGAGAACAAAAAATCTGCACAAAATGCAGTAGATAAGTTAATGGAATGCTGATCAATAACTAACAAATCTGGACGTGGATACTTCCTTGTAGAGGCAGGACAGGTCGGTAGATGTTTCTCTGTTGCACATTTTTCCGGGATGTGCAAAAATCACAGTGCTGTAGAAGGTTATGTAAGGTCGAAGTGTTTCGGTTTTGTTAACCTAGAAGATGCATATGATTTTGTGAAAGCAACAAATGGACTTGAATGATAAAGAGTTTGATTAAAACGAGTGATAGGTTGAAAAGCTATGAAATTTTTTGAGAGTTAAGAGTTCTGGAGCTGATCGAGCATAGTGCGGATGATTTACTTGGTTGATAGCATCTACAATGATAAATTTACCATAGTGTTTTAGGAATTGCCACAATTTCCTCGTGCTATGTTTATTATTTTCTTTTAATGATAAAACCGTGCAGTTCCAATTTCATCCTTCTCAGAGTAGTAATTGTCATGTTTTCCCTCTAAACTCTTAAATTTACAGCATATGTCGAAATGTGCCTTTATATATATGCTCTCTACTCTATTTCAATGTCTTGGAGTTGTGAGCCCCATGGTTCTAATCATGGACTTTTGTATGCAAAAGTTCGTTTCATAGTCAAGGATTAGGAATGTAACTCTTATTCATTGATTGGATCTGCTAGCTCTCATTGTTCTCTCTTTTTGAGTGCCAAGTATATTTCGGGGAGATTATTCACTTGGCAAGCCAAAAACTTGTAAAGGAAACTGGCCATCTCCTTGAATTACTTTATTAATGATAAATATAGTTCTCCATCTCCCGTAGTTTTCCTCTTTATGCAGAGCCATTGATAATTGGATTTTTGCCTAAAAATTTGGAGCAAGAATACAACTTCCAGTCTGCTGGCTCGACGGTTGCTTTTGTCACTTTCCTGTGTACGTTCTTGATGTTCTCTATATATATTCGAAAATTTCTGGTAAAAGTTCTCTTCCATTCATCATGCGAGTGTTACGAATAAACTCTTGAATATGTATCAATTTTTTAGTAGAACTATGTGTACGATGACTGAGTTCTTTTACAATGTCTTCTCACAAGTCTGAAAATCAATATTTATATTGTCATTCTGTGTGCTTTCATAGTCTGTGAAACTGAAGACTGGAGTCTTCTGGTTAAATATTTGCAATACAACCTGCTGGTTTATATGGAATGAGAGAAATATAGACCTTTCTTAGATGCTTGTGACCAGGGAATGATTATTGTTGTAGCTTAAAAATGCAGCTCTCTTGATAACGATTTCAGTAATGATTCTTCCTACCATTTTTGCCCATTAGTAACCTTTTTCTTAACTCATGGCTTAGATTTGGATGGTGGCTTATCTCCCACTTTAGATTTGGACGATCTCTTTTTGTACTTTACTGTAAGAAACAAAAGATAAAATCCTCTCTTAACTTGCTCGTAAATTTTTCTCATTACTGTGTGGATATGATGACTGATATTTATAAAATTTTGGCAATGGTGGTAAAAGGGTCAACCTCAAATGCTTTGAGGGTTAGGGAGACTCAAATCATGGTGCCCGAGATGATCAAATATCATAGTGCGTTTTGTAAATTTCCCTGTTGGAATCTAGATCGTCTCCACCATATTCTTTTCCTTTATGATAGATTGTGGCGTGATTTCTCCGGCATGTATTTGATGATCTTCTGGTGCTCCCTCCCTGGGTTAAAGATTGATCTTTTTTACTTTTTTATTTGTTGGGTTGATAATGGTTTCTGCTGTAATTCTGAGCATTAACATGGAGTGTATTTAAAAAAAATGACCAGTTCTAAATGGTCGAAAAATTGGTAGTAGAAGATGCGATGCAGAGATAACAAGTCAGAAAAGAAAGTTGTAAGTTCTTTGCGTCCATTCTTCTTTCTATTAAAGAGAAGATCTAACATGGCTCTGCTTTATGTAGATTGAATTTGGTTATGAGCAGCTAACTTCCTGACGATGGGGTCTGATAAGGCTTTTGCCTTGGACTTCTGCGCTCTTGGTTAAAACTTTTCCCTATGCAGTGGCTTCTTTGCTAAATAGTTGCTTCCAGGATGGGCCAAATTGAAGTTTCGCACATACTGTGTCACCTGAGATTTTGCAGACAAGTTTCGGAGTGGTCGCATGAAGGTTATGTGGCTGCTTGGAAAGTTCAACGTTCACTGGTCTTGTATTTTGGAGACAGCTAGATTTGTCATCTTGGCGTAGAAGCGCAAGACACTTTGGAATATAAATCCTACAGTGTTCTTTTTCATATTGACCCAATGCATTTCATTAGTTTGCCTTTAACATTAAACCTCAAATTCTAGTACATATTTCTTTGTCCTGTAATTTCCAATGTCCAGCCGACACCTAGGAAACATCATTTACCTTCTAACACGTGGACTGTGATGAAAGTGGACGCAATTCACATAAAGAAAACTGTTTGATGTTTATCTTATCAGACCCACGTCTTGAAATTGCATCTGTTTTCCTTGGCTTTTCCACAATTTCCATCCTAATTATTTGATTACCTTCTTCTCTACAATGAGTTGGGTGCTGGTGGCTTCCCACGTGTGAGGCTTAAGCAGCGAGCAAATACTTTTCTTATGGACGAGGACTTGAATAGGTATCAAAACCAACTTATGGATCAAGTTTCCTGGTAATTTTTTTTAAGACAACTCAAAAAAGTTAATTAATGGCCTCAAAATCTTGAGCTCTGTTATAAGATTCACCCGTTTTTACCATTCTTTGGCTTTGATGTGAAGAGTTACTGACTGAATTTTTTTAATTTTTAATTTTTATTTTTTTCCTTTATGAGGGTAGAAGTGTGGATAGTATAGGATAGGAACTCTAAATGTAGACTGAATCAATTGGATTTTGTTAGTTGGCAGTAAATTAATATCAAACCTACCTGTTTTATATTTTCAATCTGCAGGTTAAGACCAGGATGAGCCTATTTATTTTATTAATGAGCTAATGGAAGAGTGACATTTTAAATTGCATCGGATGCCTGGCATGCTTGCTTGCTGTGCCATCCTTCCCTTGATGGTGAAGTTAGTTAATATTTTTGGCTTCTCCCCATTATCTATTTTGCAGATCACGGGAACTTCTTAGGCAGTTTACTTTCAAAATTTCCAACTTTATATGCAAAGTTCAATGAAACTTAATGATGAAAAAGGCCTTTTTTTTCATTTTTTTCCCTGTTTATTGCTGTGAGTCTGATTTTTAAACTGGTAGTTGAAACAACCCAATGTGATATTATTGTTTTGCAGTTATGGGTGAATGACGGTTCCACCAAGTACTGACCTTTGCATCATTTTCACCCTTCTTGCTTAATCTATTTAATTAAACTCCCTACATTTTTTTACTAGAGGGTTTGGTAAGTATATTTACTGCAGTGTTTGCAGGTGAAAGGGATTGGCAATATCATCATCAGTGATTATTGCAGCAGGCTTCTTTTCATTTGCTGTACCAATTTCATTCCTTTTATTTTTTTCCTTTATAATAATATATTATCTAAAAGTCTTAGCTGATAGGTGGGATTGATTAGCACATTTTTTCTGCTGTTTGATTATTGACAAAAGTTGCATCCAGTTTTCTTCTTTCTTTGACACATTCATTTTGATTCAATTTCAATCTTCTTTCTACTCATTTTGAGAAGAAAAATGGCAACTGACAAAGATGCCCACTTATAATGGTGGGTTAGGAGAAAGGCAATCTTGGTTCCCTCATGGTTTAGCTTGATAATTATATCTACCGCCGTGGGTGAAAAAAAAGTGACCCATCTCAATTGCCTGGTTAATTTCAATCTCCTCAACGCTTTATGCCTAAGCACAGTAGATTAG

mRNA sequence

ATGCCTCGTCGGCTCCACCAAACAGTTGCAACAAAAACCGGATTGACCAAGAAAGGCGTTGACCAGCTATATGCTTCTGGCGTGTTAACGTTCTCCATCTCCCGTAGTTTTCCTCTTTATGCAGAGCCATTGATAATTGGATTTTTGCCTAAAAATTTGGAGCAAGAATACAACTTCCAGTCTGCTGGCTCGACGGTTGCTTTTGTCACTTTCCTACAAGTTTCGGAGTGGTCGCATGAAGGTTATGTGGCTGCTTGGAAAGTTCAACGTTCACTGCCGACACCTAGGAAACATCATTTACCTTCTAACACGTGGACTGTGATGAAAGTGGACGCAATTCACATAAAGAAAACTTTATGGGTGAATGACGGTTCCACCAAGAGAAAGGCAATCTTGGTTCCCTCATGGTTTAGCTTGATAATTATATCTACCGCCGTGGGTGAAAAAAAAGTGACCCATCTCAATTGCCTGGTTAATTTCAATCTCCTCAACGCTTTATGCCTAAGCACAGTAGATTAG

Coding sequence (CDS)

ATGCCTCGTCGGCTCCACCAAACAGTTGCAACAAAAACCGGATTGACCAAGAAAGGCGTTGACCAGCTATATGCTTCTGGCGTGTTAACGTTCTCCATCTCCCGTAGTTTTCCTCTTTATGCAGAGCCATTGATAATTGGATTTTTGCCTAAAAATTTGGAGCAAGAATACAACTTCCAGTCTGCTGGCTCGACGGTTGCTTTTGTCACTTTCCTACAAGTTTCGGAGTGGTCGCATGAAGGTTATGTGGCTGCTTGGAAAGTTCAACGTTCACTGCCGACACCTAGGAAACATCATTTACCTTCTAACACGTGGACTGTGATGAAAGTGGACGCAATTCACATAAAGAAAACTTTATGGGTGAATGACGGTTCCACCAAGAGAAAGGCAATCTTGGTTCCCTCATGGTTTAGCTTGATAATTATATCTACCGCCGTGGGTGAAAAAAAAGTGACCCATCTCAATTGCCTGGTTAATTTCAATCTCCTCAACGCTTTATGCCTAAGCACAGTAGATTAG

Protein sequence

MPRRLHQTVATKTGLTKKGVDQLYASGVLTFSISRSFPLYAEPLIIGFLPKNLEQEYNFQSAGSTVAFVTFLQVSEWSHEGYVAAWKVQRSLPTPRKHHLPSNTWTVMKVDAIHIKKTLWVNDGSTKRKAILVPSWFSLIIISTAVGEKKVTHLNCLVNFNLLNALCLSTVD
Homology
The following BLAST results are available for this feature:
BLAST of Clc08G16690.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc08G16690.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc08G16690.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc08G16690.2 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc08G16690Clc08G16690gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27132158..27132296exon
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27132705..27132730exon
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27133562..27133639exon
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27133820..27133880exon
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27135082..27135206exon
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27136036..27136055exon
Clc08G16690.2-exonClc08G16690.2-exon-ClcChr08:27136929..27136998exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27132158..27132296CDS
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27132705..27132730CDS
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27133562..27133639CDS
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27133820..27133880CDS
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27135082..27135206CDS
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27136036..27136055CDS
Clc08G16690.2-cdsClc08G16690.2-cds-ClcChr08:27136929..27136998CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc08G16690.2Clc08G16690.2-proteinpolypeptide