Clc01G01340.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc01G01340.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ethylene-responsive transcription factor ERF096-like protein
Location	ClcChr01: 1083260 .. 1084559 (+)
Sequence length	690
RNA-Seq Expression	Clc01G01340.2
Synteny	Clc01G01340.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTATTCCGTTCACTTTCGACTATAAAAGCTCCATATTTGAAGCCTCACATGGCCATGGGAAGCTGCAGAAAGAAGGCTTCATCAAGAGGCCACCATCGCTATGTAGGAGTTCGCCAGAGGCCCTCCGGCAGATGGGTCTCTGAGATCAAGGACTCCCTCCAAAAGGTCAGACTATGGCTCGGGACTTTCGACACCGCCGAGGAGGCCGCTCGGGCTTACGATGATGCGGCTCGGGCACTCCGTGGCTCCAACGCTCGCACTAACTTTGACTACTTGCCTTCAGGCTCGTATGACTCTGTTCCAAGTAAGGATTTAAATATCGATAATCGAGTAAATGAAAAATGTGTAGGTATTTATTTTATGAAAATATTTAATAGGTGTTTTCATCAATAATTACAATGGTTATTTTCGAATATAGTAAAATCAGAAAATATATTTATAATTATAGAAAAATTTCAAGGTTTGTAAATAGTATCATATTTTTTCCATTTATAAAAGTTTCACAGTTGGTAAATCATATCAAATTTTTTATATTTGTAAATATTTTGACTCATTTTGCTATATTAGAAAACAACATTTTCTTTATAAGTTTATTGTCTTATTAGTTACTATTCGATATATTTATCATTTTTTTTAAGGGCAATGATCAGAGTCAGCTTAGGTGGCTCCACCTAATCCCACAATTTTGTTACATATTAATTTTCTATAAGGAAAATCTTTGCCACATGACAATTTTTAATTAGCCACACAATGTTTAAATATTTTTTGTTTTTTTTTTTTTTTAAGTAAAATAACAAATTGAGTCAAGTATGAAAAAGTAAAATTTTTTGAATTTCATTTTACGTAATTAAAAACTTTGTATATAGATATATAAATGAAAATGTAAACATGTGGATGGATATTTAATGTAATAGATGCAGGCGATGCTAACCAACCAATTGAACCACCTTTCTCATTCGAAGAGGGTTGCATCGAAGAAGAGGGGCTCCTAGGGGCCCTAAAGGCGAAGCTATTCGATGGCAAGGGGCGGCGGGTGCTGCAGGCGGTGGCGCAAACAACTTGCTGCTCAACCGCGGATAATGTAAACACAAACAACAACAACAATCACAATGGAACTATTATTCAAGGTGGCGTCCACCAGCCACCGGAATACCAAGTTGATGCGGTGGCAGAGGTGGATTCCGGCGGAGGAAGTGGATGGTTGAATGCTTCGGCCGCCGTGGGAATATATGCGTGGCCGGTGGTTTTAGGTGGGCTAGAAGAAGGGGGTATTGGAGATGTGTGTGTTATGTAG

mRNA sequence

ATGTCCTTATTCCGTTCACTTTCGACTATAAAAGCTCCATATTTGAAGCCTCACATGGCCATGGGAAGCTGCAGAAAGAAGGCTTCATCAAGAGGCCACCATCGCTATGTAGGAGTTCGCCAGAGGCCCTCCGGCAGATGGGTCTCTGAGATCAAGGACTCCCTCCAAAAGGTCAGACTATGGCTCGGGACTTTCGACACCGCCGAGGAGGCCGCTCGGGCTTACGATGATGCGGCTCGGGCACTCCGTGGCTCCAACGCTCGCACTAACTTTGACTACTTGCCTTCAGGCTCGTATGACTCTGTTCCAAATGCAGGCGATGCTAACCAACCAATTGAACCACCTTTCTCATTCGAAGAGGGTTGCATCGAAGAAGAGGGGCTCCTAGGGGCCCTAAAGGCGAAGCTATTCGATGGCAAGGGGCGGCGGGTGCTGCAGGCGGTGGCGCAAACAACTTGCTGCTCAACCGCGGATAATGTAAACACAAACAACAACAACAATCACAATGGAACTATTATTCAAGGTGGCGTCCACCAGCCACCGGAATACCAAGTTGATGCGGTGGCAGAGGTGGATTCCGGCGGAGGAAGTGGATGGTTGAATGCTTCGGCCGCCGTGGGAATATATGCGTGGCCGGTGGTTTTAGGTGGGCTAGAAGAAGGGGGTATTGGAGATGTGTGTGTTATGTAG

Coding sequence (CDS)

ATGTCCTTATTCCGTTCACTTTCGACTATAAAAGCTCCATATTTGAAGCCTCACATGGCCATGGGAAGCTGCAGAAAGAAGGCTTCATCAAGAGGCCACCATCGCTATGTAGGAGTTCGCCAGAGGCCCTCCGGCAGATGGGTCTCTGAGATCAAGGACTCCCTCCAAAAGGTCAGACTATGGCTCGGGACTTTCGACACCGCCGAGGAGGCCGCTCGGGCTTACGATGATGCGGCTCGGGCACTCCGTGGCTCCAACGCTCGCACTAACTTTGACTACTTGCCTTCAGGCTCGTATGACTCTGTTCCAAATGCAGGCGATGCTAACCAACCAATTGAACCACCTTTCTCATTCGAAGAGGGTTGCATCGAAGAAGAGGGGCTCCTAGGGGCCCTAAAGGCGAAGCTATTCGATGGCAAGGGGCGGCGGGTGCTGCAGGCGGTGGCGCAAACAACTTGCTGCTCAACCGCGGATAATGTAAACACAAACAACAACAACAATCACAATGGAACTATTATTCAAGGTGGCGTCCACCAGCCACCGGAATACCAAGTTGATGCGGTGGCAGAGGTGGATTCCGGCGGAGGAAGTGGATGGTTGAATGCTTCGGCCGCCGTGGGAATATATGCGTGGCCGGTGGTTTTAGGTGGGCTAGAAGAAGGGGGTATTGGAGATGTGTGTGTTATGTAG

Protein sequence

MSLFRSLSTIKAPYLKPHMAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFDGKGRRVLQAVAQTTCCSTADNVNTNNNNNHNGTIIQGGVHQPPEYQVDAVAEVDSGGGSGWLNASAAVGIYAWPVVLGGLEEGGIGDVCVM

Homology

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BLAST of Clc01G01340.2 vs. NCBI nr
Match: KAA0042627.1 (ethylene-responsive transcription factor ERF096-like protein [Cucumis melo var. makuwa] >TYK06028.1 ethylene-responsive transcription factor ERF096-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 2.1e-96
Identity = 187/217 (86.18%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S DS  +AGDANQPIE PFSFEEGCIEE+GLLGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPSSCDSGADAGDANQPIESPFSFEEGCIEEDGLLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADN-VNTNNNNNHNGTIIQGGVHQPP---EYQVDAV-AEVDS 198
           GKG+RVLQAVAQTTCCST DN +NTNNN+N+N TIIQGG+H PP     QVD V AE+DS
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLINTNNNSNYNETIIQGGIHPPPVLSSGQVDVVTAELDS 180

Query: 199 GGGSGWLNASAAVGIYAWPVVLGGLEEGG-IGDVCVM 230
           GGGSGW NASAAVG++AWPVVLGGLEEGG IGDVCVM
Sbjct: 181 GGGSGWFNASAAVGLHAWPVVLGGLEEGGNIGDVCVM 217

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BLAST of Clc01G01340.2 vs. NCBI nr
Match: XP_008437477.1 (PREDICTED: ethylene-responsive transcription factor ERF096-like [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 1.4e-95
Identity = 185/217 (85.25%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S DS  +AGDANQPIE PFSFEEGCIEE+GLLGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPSSCDSGADAGDANQPIESPFSFEEGCIEEDGLLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADN-VNTNNNNNHNGTIIQGGVHQPP---EYQVDAV-AEVDS 198
           GKG+RVLQAVAQTTCCST DN +NTNNN+N+N TIIQGG+H PP     QVD V AE+DS
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLINTNNNSNYNETIIQGGIHPPPVLSSGQVDVVTAELDS 180

Query: 199 GGGSGWLNASAAVGIYAWPVVLGGLEEGG-IGDVCVM 230
           GGGSGW NAS+ VG++AWPVVLGGLEEGG IGDVCVM
Sbjct: 181 GGGSGWFNASSTVGLHAWPVVLGGLEEGGNIGDVCVM 217

[Close]

BLAST of Clc01G01340.2 vs. NCBI nr
Match: XP_004145964.1 (ethylene-responsive transcription factor ERN1 isoform X2 [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 1.7e-93
Identity = 185/216 (85.65%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S D    AGDANQP E PFSFEEGCIEE+G LGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPTSAD----AGDANQPTESPFSFEEGCIEEDGFLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADNVNTNNNNNHNGT-IIQGGVHQPPEY--QVDAV-AEVDSG 198
           GKG+RVLQAVAQTTCCST DN+NTNNN+NHN T IIQGG+H P     QVDAV AE+DSG
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLNTNNNSNHNETIIIQGGIHPPSSSSGQVDAVTAELDSG 180

Query: 199 GGSGWL-NASAAVGIYAWPVVLGGLEEGGIGDVCVM 230
           GGSGW  NASAAVG++AWPVVLGGLEEGGIGDVCVM
Sbjct: 181 GGSGWFNNASAAVGLHAWPVVLGGLEEGGIGDVCVM 212

[Close]

BLAST of Clc01G01340.2 vs. NCBI nr
Match: XP_031741179.1 (ethylene-responsive transcription factor 9 isoform X1 [Cucumis sativus] >KAE8647821.1 hypothetical protein Csa_000612 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 3.7e-93
Identity = 184/216 (85.19%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP     S  +AGDANQP E PFSFEEGCIEE+G LGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPP---TSAVDAGDANQPTESPFSFEEGCIEEDGFLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADNVNTNNNNNHNGT-IIQGGVHQPPEY--QVDAV-AEVDSG 198
           GKG+RVLQAVAQTTCCST DN+NTNNN+NHN T IIQGG+H P     QVDAV AE+DSG
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLNTNNNSNHNETIIIQGGIHPPSSSSGQVDAVTAELDSG 180

Query: 199 GGSGWL-NASAAVGIYAWPVVLGGLEEGGIGDVCVM 230
           GGSGW  NASAAVG++AWPVVLGGLEEGGIGDVCVM
Sbjct: 181 GGSGWFNNASAAVGLHAWPVVLGGLEEGGIGDVCVM 213

[Close]

BLAST of Clc01G01340.2 vs. NCBI nr
Match: XP_031741180.1 (ethylene-responsive transcription factor ERN2 isoform X3 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 8.3e-93
Identity = 184/216 (85.19%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S      AGDANQP E PFSFEEGCIEE+G LGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPTS------AGDANQPTESPFSFEEGCIEEDGFLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADNVNTNNNNNHNGT-IIQGGVHQPPEY--QVDAV-AEVDSG 198
           GKG+RVLQAVAQTTCCST DN+NTNNN+NHN T IIQGG+H P     QVDAV AE+DSG
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLNTNNNSNHNETIIIQGGIHPPSSSSGQVDAVTAELDSG 180

Query: 199 GGSGWL-NASAAVGIYAWPVVLGGLEEGGIGDVCVM 230
           GGSGW  NASAAVG++AWPVVLGGLEEGGIGDVCVM
Sbjct: 181 GGSGWFNNASAAVGLHAWPVVLGGLEEGGIGDVCVM 210

[Close]

BLAST of Clc01G01340.2 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-20
Identity = 71/161 (44.10%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 13  PYLKPHMAMGSCRKKASSRGH----HRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTA 72
           P L+ H   G+   K   R      +++VGVRQRPSGRWV+EIKD+ QK+R+WLGTF+TA
Sbjct: 8   PNLQQHQKAGTKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETA 67

Query: 73  EEAARAYDDAARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGL 132
           EEAARAYD+AA  LRGSN RTNF  +   S DS P A      I    + ++G  ++EG+
Sbjct: 68  EEAARAYDEAACLLRGSNTRTNF--ITHVSLDS-PLA----SRIRNLLNNKKGNKKQEGV 127

Query: 133 LGALKAKLFDGKGRRVLQAVAQTTCCSTADNVNTNNNNNHN 170
           +         G    V    A TT  ST+ N + ++ N+HN
Sbjct: 128 VDV-------GVDVDVPAPSASTT--STSSNTSNSDKNDHN 152

[Close]

BLAST of Clc01G01340.2 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-20
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 26 KKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARALRGS 85
          +  +S   +++VGVRQRPSGRWV+EIKD+ QK+R+WLGTF+TAEEAARAYD+AA  LRGS
Sbjct: 29 RNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGS 88

Query: 86 NARTNF 92
          N RTNF
Sbjct: 89 NTRTNF 94

[Close]

BLAST of Clc01G01340.2 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-20
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 18 HMAMGSCRKKASSRGHH-RYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYD 77
          H      + K  S+G+  ++VGVRQRPSG+WV+EIKD+ QK+R+WLGTF+TAEEAARAYD
Sbjct: 3  HQTTPKQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYD 62

Query: 78 DAARALRGSNARTNF-DYLPSGS 99
          +AA  LRGSN RTNF ++ P+ S
Sbjct: 63 EAACLLRGSNTRTNFANHFPNNS 85

[Close]

BLAST of Clc01G01340.2 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 26  KKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARALRGS 85
           KK+ +R   ++VGVRQRPSGR+V+EIKD+ Q +R+WLGTF+TAEEAARAYD+AA  LRGS
Sbjct: 25  KKSETR--DKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAARAYDEAATLLRGS 84

Query: 86  NARTNFDYLPSGSYDS 102
             RTNF  +   SYDS
Sbjct: 85  KTRTNF--VTHVSYDS 96

[Close]

BLAST of Clc01G01340.2 vs. ExPASy Swiss-Prot
Match: Q9M644 (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=LEP PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-17
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 25  RKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARALRG 84
           +KK   +   R++GVR+RP GR+ +EI+D   K R WLGTFDTAEEAA AYD AAR++RG
Sbjct: 9   KKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRG 68

Query: 85  SNARTNF---DYLPSGSYDSVPNAGDANQPIEPP 116
           + ARTNF   D  PS S  S+ +  D   P  PP
Sbjct: 69  TRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPPP 102

[Close]

BLAST of Clc01G01340.2 vs. ExPASy TrEMBL
Match: A0A5A7TLM2 (Ethylene-responsive transcription factor ERF096-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001280 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.0e-96
Identity = 187/217 (86.18%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S DS  +AGDANQPIE PFSFEEGCIEE+GLLGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPSSCDSGADAGDANQPIESPFSFEEGCIEEDGLLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADN-VNTNNNNNHNGTIIQGGVHQPP---EYQVDAV-AEVDS 198
           GKG+RVLQAVAQTTCCST DN +NTNNN+N+N TIIQGG+H PP     QVD V AE+DS
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLINTNNNSNYNETIIQGGIHPPPVLSSGQVDVVTAELDS 180

Query: 199 GGGSGWLNASAAVGIYAWPVVLGGLEEGG-IGDVCVM 230
           GGGSGW NASAAVG++AWPVVLGGLEEGG IGDVCVM
Sbjct: 181 GGGSGWFNASAAVGLHAWPVVLGGLEEGGNIGDVCVM 217

[Close]

BLAST of Clc01G01340.2 vs. ExPASy TrEMBL
Match: A0A1S3AUP5 (ethylene-responsive transcription factor ERF096-like OS=Cucumis melo OX=3656 GN=LOC103482887 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.6e-96
Identity = 185/217 (85.25%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S DS  +AGDANQPIE PFSFEEGCIEE+GLLGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPSSCDSGADAGDANQPIESPFSFEEGCIEEDGLLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADN-VNTNNNNNHNGTIIQGGVHQPP---EYQVDAV-AEVDS 198
           GKG+RVLQAVAQTTCCST DN +NTNNN+N+N TIIQGG+H PP     QVD V AE+DS
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLINTNNNSNYNETIIQGGIHPPPVLSSGQVDVVTAELDS 180

Query: 199 GGGSGWLNASAAVGIYAWPVVLGGLEEGG-IGDVCVM 230
           GGGSGW NAS+ VG++AWPVVLGGLEEGG IGDVCVM
Sbjct: 181 GGGSGWFNASSTVGLHAWPVVLGGLEEGGNIGDVCVM 217

[Close]

BLAST of Clc01G01340.2 vs. ExPASy TrEMBL
Match: A0A0A0KQI4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G146300 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.0e-93
Identity = 184/216 (85.19%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA
Sbjct: 1   MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIEEEGLLGALKAKLFD 138
           ARALRGSNARTNF+YLP  S      AGDANQP E PFSFEEGCIEE+G LGALKAKLFD
Sbjct: 61  ARALRGSNARTNFEYLPPTS------AGDANQPTESPFSFEEGCIEEDGFLGALKAKLFD 120

Query: 139 GKGRRVLQAVAQTTCCSTADNVNTNNNNNHNGT-IIQGGVHQPPEY--QVDAV-AEVDSG 198
           GKG+RVLQAVAQTTCCST DN+NTNNN+NHN T IIQGG+H P     QVDAV AE+DSG
Sbjct: 121 GKGQRVLQAVAQTTCCSTTDNLNTNNNSNHNETIIIQGGIHPPSSSSGQVDAVTAELDSG 180

Query: 199 GGSGWL-NASAAVGIYAWPVVLGGLEEGGIGDVCVM 230
           GGSGW  NASAAVG++AWPVVLGGLEEGGIGDVCVM
Sbjct: 181 GGSGWFNNASAAVGLHAWPVVLGGLEEGGIGDVCVM 210

[Close]

BLAST of Clc01G01340.2 vs. ExPASy TrEMBL
Match: A0A6J1HZQ1 (ethylene-responsive transcription factor LEP-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469103 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 5.1e-56
Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAM +C KK SSRGHHRYVGVRQRPSGRWVSEIKDSL KVRLWLGTFDTAE+AARAYDDA
Sbjct: 1   MAMRTCTKKPSSRGHHRYVGVRQRPSGRWVSEIKDSLHKVRLWLGTFDTAEDAARAYDDA 60

Query: 79  ARALRGSNARTNFDYL-PSGSYDSVPNAGDANQPIEPPFSFEEGCIE-EEGLLGALKAKL 138
           ARALRGSNARTNF YL P+ S  S+ +AGDA+QP+EPPFSFEEGC+E ++GLLGAL+AKL
Sbjct: 61  ARALRGSNARTNFAYLPPTSSESSIVDAGDASQPMEPPFSFEEGCMEKDDGLLGALRAKL 120

Query: 139 FDGKGRRVLQAVAQTTC 154
           FDGKGRRVLQAVAQT+C
Sbjct: 121 FDGKGRRVLQAVAQTSC 137

[Close]

BLAST of Clc01G01340.2 vs. ExPASy TrEMBL
Match: A0A6J1HY79 (ethylene-responsive transcription factor RAP2-11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469103 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 7.4e-55
Identity = 113/136 (83.09%), Postives = 124/136 (91.18%), Query Frame = 0


Query: 19  MAMGSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDA 78
           MAM +C KK SSRGHHRYVGVRQRPSGRWVSEIKDSL KVRLWLGTFDTAE+AARAYDDA
Sbjct: 1   MAMRTCTKKPSSRGHHRYVGVRQRPSGRWVSEIKDSLHKVRLWLGTFDTAEDAARAYDDA 60

Query: 79  ARALRGSNARTNFDYLPSGSYDSVPNAGDANQPIEPPFSFEEGCIE-EEGLLGALKAKLF 138
           ARALRGSNARTNF YLP  S +S  + GDA+QP+EPPFSFEEGC+E ++GLLGAL+AKLF
Sbjct: 61  ARALRGSNARTNFAYLPPTSSES--SIGDASQPMEPPFSFEEGCMEKDDGLLGALRAKLF 120

Query: 139 DGKGRRVLQAVAQTTC 154
           DGKGRRVLQAVAQT+C
Sbjct: 121 DGKGRRVLQAVAQTSC 134

[Close]

BLAST of Clc01G01340.2 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 )

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-21
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 18 HMAMGSCRKKASSRGHH-RYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYD 77
          H      + K  S+G+  ++VGVRQRPSG+WV+EIKD+ QK+R+WLGTF+TAEEAARAYD
Sbjct: 3  HQTTPKQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYD 62

Query: 78 DAARALRGSNARTNF-DYLPSGS 99
          +AA  LRGSN RTNF ++ P+ S
Sbjct: 63 EAACLLRGSNTRTNFANHFPNNS 85

[Close]

BLAST of Clc01G01340.2 vs. TAIR 10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-18
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 25  RKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARALRG 84
           +KK   +   R++GVR+RP GR+ +EI+D   K R WLGTFDTAEEAA AYD AAR++RG
Sbjct: 9   KKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRG 68

Query: 85  SNARTNF---DYLPSGSYDSVPNAGDANQPIEPP 116
           + ARTNF   D  PS S  S+ +  D   P  PP
Sbjct: 69  TRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPPP 102

[Close]

BLAST of Clc01G01340.2 vs. TAIR 10
Match: AT1G53910.1 (related to AP2 12 )

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 22  GSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARA 81
           G   K A+ +  ++Y G+RQRP G+W +EI+D  +  R+WLGTF TAEEAARAYD AAR 
Sbjct: 111 GDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARR 170

Query: 82  LRGSNARTNF 92
           +RGS A+ NF
Sbjct: 171 IRGSKAKVNF 180

[Close]

BLAST of Clc01G01340.2 vs. TAIR 10
Match: AT1G53910.2 (related to AP2 12 )

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 22  GSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARA 81
           G   K A+ +  ++Y G+RQRP G+W +EI+D  +  R+WLGTF TAEEAARAYD AAR 
Sbjct: 111 GDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARR 170

Query: 82  LRGSNARTNF 92
           +RGS A+ NF
Sbjct: 171 IRGSKAKVNF 180

[Close]

BLAST of Clc01G01340.2 vs. TAIR 10
Match: AT1G53910.3 (related to AP2 12 )

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 22  GSCRKKASSRGHHRYVGVRQRPSGRWVSEIKDSLQKVRLWLGTFDTAEEAARAYDDAARA 81
           G   K A+ +  ++Y G+RQRP G+W +EI+D  +  R+WLGTF TAEEAARAYD AAR 
Sbjct: 109 GDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARR 168

Query: 82  LRGSNARTNF 92
           +RGS A+ NF
Sbjct: 169 IRGSKAKVNF 178

The following BLAST results are available for this feature:

BLAST of Clc01G01340.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042627.1	2.1e-96	86.18	ethylene-responsive transcription factor ERF096-like protein [Cucumis melo var. ...	[more]
XP_008437477.1	1.4e-95	85.25	PREDICTED: ethylene-responsive transcription factor ERF096-like [Cucumis melo]	[more]
XP_004145964.1	1.7e-93	85.65	ethylene-responsive transcription factor ERN1 isoform X2 [Cucumis sativus]	[more]
XP_031741179.1	3.7e-93	85.19	ethylene-responsive transcription factor 9 isoform X1 [Cucumis sativus] >KAE8647...	[more]
XP_031741180.1	8.3e-93	85.19	ethylene-responsive transcription factor ERN2 isoform X3 [Cucumis sativus]	[more]

BLAST of Clc01G01340.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A1X9PY88	2.0e-20	44.10	Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN...	[more]
A2Q5W1	2.0e-20	69.70	Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=...	[more]
Q6J9S1	2.0e-20	60.24	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702...	[more]
A9Y0K8	1.8e-18	64.47	Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=...	[more]
Q9M644	3.5e-17	52.13	Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Clc01G01340.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLM2	1.0e-96	86.18	Ethylene-responsive transcription factor ERF096-like protein OS=Cucumis melo var...	[more]
A0A1S3AUP5	6.6e-96	85.25	ethylene-responsive transcription factor ERF096-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KQI4	4.0e-93	85.19	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G146300 PE=...	[more]
A0A6J1HZQ1	5.1e-56	83.21	ethylene-responsive transcription factor LEP-like isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1HY79	7.4e-55	83.09	ethylene-responsive transcription factor RAP2-11-like isoform X2 OS=Cucurbita ma...	[more]

BLAST of Clc01G01340.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19790.1	1.4e-21	60.24	related to AP2 11	[more]
AT5G13910.1	2.5e-18	52.13	Integrase-type DNA-binding superfamily protein	[more]
AT1G53910.1	4.6e-17	55.71	related to AP2 12	[more]
AT1G53910.2	4.6e-17	55.71	related to AP2 12	[more]
AT1G53910.3	4.6e-17	55.71	related to AP2 12	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..229
None	No IPR available	PANTHER	PTHR31677:SF68	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP	coord: 24..157
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 24..157
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 36..47 score: 58.03 coord: 58..74 score: 72.94
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 35..98 e-value: 8.6E-38 score: 141.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 35..84 e-value: 8.3E-14 score: 51.6
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 35..92 score: 20.665833
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 35..94 e-value: 1.28053E-21 score: 82.7047
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 34..93 e-value: 2.1E-24 score: 87.4
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 35..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc01G01340	Clc01G01340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G01340.2-exon	Clc01G01340.2-exon-ClcChr01:1083260..1083569	exon
Clc01G01340.2-exon	Clc01G01340.2-exon-ClcChr01:1084180..1084559	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G01340.2-cds	Clc01G01340.2-cds-ClcChr01:1083260..1083569	CDS
Clc01G01340.2-cds	Clc01G01340.2-cds-ClcChr01:1084180..1084559	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc01G01340.2	Clc01G01340.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity