Cla97C02G042490.2 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C02G042490.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	PSII 6.1 kDa protein
Location	Cla97Chr02: 30452611 .. 30453758 (-)
Sequence length	585
RNA-Seq Expression	Cla97C02G042490.2
Synteny	Cla97C02G042490.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCATAAAAATGAAAACTTTCCGCTGTCCACTCTTCAAAACACAAAAAAATAGAAGAAAATTCTTCAGATCCAAGTGTTAAAGCCAATCAAAGCCTTTCTCCTCACCCTCAAGCAGCTGTTTTTGGCTGGAAAAAATGGCTTCCTCTCTGCTTTCTCACTCCAGCCTTTTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAACAATGGCAGCTCACAGTAAGTTTCTTCAATTCCAAACAGCTTTTTCACTACTTTTTATTACCCAATTACAGAAAAAAGCTTAAACTTTCTCTCTCTTCATTTGAAGAATTGAACTGGGTTTTGGCTCAATGTTCTGTTTCTAAGTTTAATTATCATTTTGGTTAAATTGAATCTGGTTGTAAAAATAGCATTTGTTCCCAGTTATTACAGCTTTCCCTAATGTCTATGTTGTTTAGTTTCTCATCAGTTGACATGTTTTGATTAGATATGATAAAGATAGGTAATAAGTTTAGATTTGATGAAGAATGTATGTGAAAGGTTAAGTTGGGTTGACTTTTGTTCATCTTACCTTCTCCCTTTCATTAGCCGCTCTTTGATCGACCAATGGACTGAGATTTAGGTCATGAAGGCCATTTAAGTTTGAATCTATGTAAATAAATAGAGAACATCATATTTATTATCGAATCACGAGGAAGTAGATAAGAGGGAGTCTAATACACATTTTTGTCTGAACATAGCTCAAATGGTTTAGGCACATGCTCTTAGTTAATTTTTCTAATGTGGTTGTTGATTACTAGAGTTTCATGGGAAAGAAAATTGGAAGAGGAGTGTTTTTTTCTTTTCAGGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGGTAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCGGGGACGGTGGCAACGGTGGTGATGGCTGCATTGGCAGCAGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGCACAGGGCTGCCTTTTGGCTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA

mRNA sequence

TGCATAAAAATGAAAACTTTCCGCTGTCCACTCTTCAAAACACAAAAAAATAGAAGAAAATTCTTCAGATCCAAGTGTTAAAGCCAATCAAAGCCTTTCTCCTCACCCTCAAGCAGCTGTTTTTGGCTGGAAAAAATGGCTTCCTCTCTGCTTTCTCACTCCAGCCTTTTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAACAATGGCAGCTCACAAGTTTCATGGGAAAGAAAATTGGAAGAGGAGTGTTTTTTTCTTTTCAGGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGGTAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCGGGGACGGTGGCAACGGTGGTGATGGCTGCATTGGCAGCAGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGCACAGGGCTGCCTTTTGGCTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA

Coding sequence (CDS)

ATGGCTTCCTCTCTGCTTTCTCACTCCAGCCTTTTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAACAATGGCAGCTCACAAGTTTCATGGGAAAGAAAATTGGAAGAGGAGTGTTTTTTTCTTTTCAGGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGGTAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCGGGGACGGTGGCAACGGTGGTGATGGCTGCATTGGCAGCAGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGCACAGGGCTGCCTTTTGGCTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA

Protein sequence

MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL

Homology

[Close]

BLAST of Cla97C02G042490.2 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 121/149 (81.21%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LLSHS LLLKGSSKVLPSP +AAH+                LPMLQKMKKGG+KCR
Sbjct: 1   MASTLLSHSRLLLKGSSKVLPSPPVAAHR----------------LPMLQKMKKGGIKCR 60

Query: 61  VEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120
           VEEK EGKKSEES+VSGT+A V MAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI
Sbjct: 61  VEEKPEGKKSEESLVSGTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120

Query: 121 LAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           LAGVF LIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 LAGVFALIWALYFVYASSLDEDEDSGLSL 133

[Close]

BLAST of Cla97C02G042490.2 vs. NCBI nr
Match: XP_016902308.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 9.6e-50
Identity = 118/155 (76.13%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKEN--WKRSVFFFS----GLPMLQKMKK 60
           MAS+LL HS LLLKGSSK+LPS TMAA  F    +    R +   +    GLP LQKMK 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSN 120
           G +KC+VEEK EGKKSEESMV GTVA V MAALAAAGPAVALVDER+STEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           NLLGWILAG+FGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of Cla97C02G042490.2 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-49
Identity = 115/149 (77.18%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LL HS LLLKGSSK+LPS TMAA +                LP LQKMK G +KC+
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------LPTLQKMKMGRIKCK 60

Query: 61  VEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120
           VEEK EGKKSEESMV GTVA V MAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWI
Sbjct: 61  VEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWI 120

Query: 121 LAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           LAG+FGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 LAGMFGLIWALYFVYASSLDEDEDSGLSL 133

[Close]

BLAST of Cla97C02G042490.2 vs. NCBI nr
Match: XP_004139238.1 (photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60797.1 hypothetical protein Csa_019406 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 8.2e-49
Identity = 117/150 (78.00%), Postives = 121/150 (80.67%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LL HS LLLKGSSK+L SPTMAAH+                LP LQKMKKGG+KC 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------LPTLQKMKKGGIKCS 60

Query: 61  VEEKAEGKK-SEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW 120
           VEEK EGKK SEESMV GTV  V MAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Sbjct: 61  VEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW 120

Query: 121 ILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           ILA VF LIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 ILAVVFALIWALYFVYASSLDEDEDSGLSL 134

[Close]

BLAST of Cla97C02G042490.2 vs. NCBI nr
Match: XP_023521133.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537055.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46
Identity = 105/149 (70.47%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LLSHS + LKGS K+LP P MAAH+                L ++QKMKKGG+KCR
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----------------LSVVQKMKKGGIKCR 60

Query: 61  VEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120
           +EEK EGK+S+ESM+SGTVA V    +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWI
Sbjct: 61  LEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120

Query: 121 LAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           LAG+FG IWALYFVYASSL+EDEDSGLSL
Sbjct: 121 LAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-26
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 45  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLS 104
           GLP + K KKGGV+C +E     K+   S++   V+    AAL A  + PA+ALVDER+S
Sbjct: 32  GLPPMGK-KKGGVRCSMET----KQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMS 91

Query: 105 TEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           TEGTGLPFGLSNNLLGWIL GVFGLIW  +FVY SSL+EDE+SGLSL
Sbjct: 92  TEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 45  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLS 104
           GLP + K  K  V C +E K    ++  +      A+++ AA AA  + PA+ALVDER+S
Sbjct: 33  GLPSMTKRSK--VTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMS 92

Query: 105 TEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           TEGTGLPFGLSNNLLGWIL GVFGLIWALYFVYAS L+EDE+SGLSL
Sbjct: 93  TEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 45  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTE 104
           GLP ++  +   V+C   ++A    +  + V G  A+ ++A  A A PA+ALVDER+STE
Sbjct: 23  GLPQMRARRSERVRCNYSKEA---ATPAAAVKGAGAS-LLAMAATAAPAMALVDERMSTE 82

Query: 105 GTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSG 147
           GTGL  GLSNNLLGWIL GVFGLIW+LY +Y S L+EDE+SG
Sbjct: 83  GTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 64  KAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG 123
           KA   +SE +     ++T  + A  AA PA ALVDER++ +GTG PFG+++ +LGW+L G
Sbjct: 30  KATTVRSEVAKKVAMLST--LPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLG 89

Query: 124 VFGLIWALYFVYASSLD--EDEDSGLSL 150
           VFG +WA++F+    L   ED D GL L
Sbjct: 90  VFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy TrEMBL
Match: A0A1S4E257 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.7e-50
Identity = 118/155 (76.13%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKEN--WKRSVFFFS----GLPMLQKMKK 60
           MAS+LL HS LLLKGSSK+LPS TMAA  F    +    R +   +    GLP LQKMK 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSN 120
           G +KC+VEEK EGKKSEESMV GTVA V MAALAAAGPAVALVDER+STEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           NLLGWILAG+FGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 115/149 (77.18%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LL HS LLLKGSSK+LPS TMAA +                LP LQKMK G +KC+
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------LPTLQKMKMGRIKCK 60

Query: 61  VEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120
           VEEK EGKKSEESMV GTVA V MAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWI
Sbjct: 61  VEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWI 120

Query: 121 LAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           LAG+FGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 LAGMFGLIWALYFVYASSLDEDEDSGLSL 133

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.0e-49
Identity = 117/150 (78.00%), Postives = 121/150 (80.67%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LL HS LLLKGSSK+L SPTMAAH+                LP LQKMKKGG+KC 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------LPTLQKMKKGGIKCS 60

Query: 61  VEEKAEGKK-SEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW 120
           VEEK EGKK SEESMV GTV  V MAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Sbjct: 61  VEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW 120

Query: 121 ILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           ILA VF LIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 ILAVVFALIWALYFVYASSLDEDEDSGLSL 134

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 103/149 (69.13%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MAS+LLSHS + LKGS K+LP P MAAH+                LP++QKMKKGG+KC+
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----------------LPVVQKMKKGGIKCK 60

Query: 61  VEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120
           +EEK EGK+S+ES++SGTVA +    +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWI
Sbjct: 61  LEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120

Query: 121 LAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           LAG+FG IWALYFVYASSL+EDEDSGLSL
Sbjct: 121 LAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of Cla97C02G042490.2 vs. ExPASy TrEMBL
Match: A0A6J1G2Y6 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111450304 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.0e-45
Identity = 108/149 (72.48%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MASSLLSHSSLLLKGSSKVLPSPTMAAHKFHGKENWKRSVFFFSGLPMLQKMKKGGVKCR 60
           MASSLLS S +LLKGSS VLP P MAA K                   L KMKKG +KC+
Sbjct: 1   MASSLLSPSRILLKGSSMVLPPPLMAARK-------------------LLKMKKGAIKCK 60

Query: 61  VEEKAEGKKSEESMVSGTVATVVMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120
           VEEK EGK+SEE MVSGTVATV MA +AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI
Sbjct: 61  VEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI 120

Query: 121 LAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           L G+FGLIW+LYFVYASSLDE +DSGLSL
Sbjct: 121 LVGMFGLIWSLYFVYASSLDEGDDSGLSL 130

[Close]

BLAST of Cla97C02G042490.2 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-27
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 45  GLPMLQKMKKGGVKCRVEEKAEGKKSEESMVSGTVATVVMAALAA--AGPAVALVDERLS 104
           GLP + K KKGGV+C +E     K+   S++   V+    AAL A  + PA+ALVDER+S
Sbjct: 32  GLPPMGK-KKGGVRCSMET----KQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMS 91

Query: 105 TEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLDEDEDSGLSL 150
           TEGTGLPFGLSNNLLGWIL GVFGLIW  +FVY SSL+EDE+SGLSL
Sbjct: 92  TEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Cla97C02G042490.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890119.1	1.1e-53	81.21	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_016902308.1	9.6e-50	76.13	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_008456049.1	2.1e-49	77.18	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_004139238.1	8.2e-49	78.00	photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60...	[more]
XP_023521133.1	1.7e-46	70.47	photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo sub...	[more]

BLAST of Cla97C02G042490.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	3.5e-26	62.62	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	1.0e-25	61.68	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	5.7e-21	53.92	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	3.2e-11	45.45	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Cla97C02G042490.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E257	4.7e-50	76.13	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A1S3C2B0	1.0e-49	77.18	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A0A0LJA2	4.0e-49	78.00	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A6J1FBR0	1.1e-46	69.13	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A6J1G2Y6	2.0e-45	72.48	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111450304 PE=3 SV=1	[more]

BLAST of Cla97C02G042490.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	2.5e-27	62.62	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 37..149 e-value: 4.2E-43 score: 146.5
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 27..149
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 27..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C02G042490	Cla97C02G042490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G042490.2-exon	Cla97C02G042490.2-exon-Cla97Chr02:30452611..30452975	exon
Cla97C02G042490.2-exon	Cla97C02G042490.2-exon-Cla97Chr02:30453539..30453758	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G042490.2-cds	Cla97C02G042490.2-cds-Cla97Chr02:30452611..30452975	CDS
Cla97C02G042490.2-cds	Cla97C02G042490.2-cds-Cla97Chr02:30453539..30453623	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G042490.2-five_prime_utr	Cla97C02G042490.2-five_prime_utr-Cla97Chr02:30453624..30453758	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C02G042490.2	Cla97C02G042490.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0042549	photosystem II stabilization
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane