Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATTATCTGCAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTTGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTATATTTTTTCTTTCAACAATAAGCTATTGGGTGATGATGCAATCGTTCGAATGGATGATCATACGGTTCTTCTAGCTTTGCTTATAAGTTGCTTGCCTATTTTTTAA
mRNA sequence
ATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATTATCTGCAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTTGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTATATTTTTTCTTTCAACAATAAGCTATTGGGTGATGATGCAATCGTTCGAATGGATGATCATACGGTTCTTCTAGCTTTGCTTATAAGTTGCTTGCCTATTTTTTAA
Coding sequence (CDS)
ATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATTATCTGCAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTTGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTATATTTTTTCTTTCAACAATAAGCTATTGGGTGATGATGCAATCGTTCGAATGGATGATCATACGGTTCTTCTAGCTTTGCTTATAAGTTGCTTGCCTATTTTTTAA
Protein sequence
MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYLYIFSFNNKLLGDDAIVRMDDHTVLLALLISCLPIF
Homology
BLAST of ClCG10G012250.2 vs. NCBI nr
Match:
XP_038903160.1 (30S ribosomal protein S21 [Benincasa hispida])
HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
MNSLARNISCSIRSSIHTNYLQHQQ RGIRVKVLNGNL+QAL FM+RKMQ+SGIERLIKR
Sbjct: 1 MNSLARNISCSIRSSIHTNYLQHQQLRGIRVKVLNGNLEQALAFMRRKMQASGIERLIKR 60
Query: 61 EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
EQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61 EQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 103
BLAST of ClCG10G012250.2 vs. NCBI nr
Match:
KAG6581566.1 (Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
MNSL+RN+SCSIRSS+HTN LQH QQWRGIRVKVLNGNL++AL F+QRKM+SSGIE
Sbjct: 1 MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
Query: 61 RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61 RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108
BLAST of ClCG10G012250.2 vs. NCBI nr
Match:
XP_022934889.1 (uncharacterized protein LOC111441929 [Cucurbita moschata] >XP_023526273.1 uncharacterized protein LOC111789807 [Cucurbita pepo subsp. pepo] >KAG7018073.1 hypothetical protein SDJN02_19939 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
MNSL+RN+SCSIRSS+HTN LQH QQWRGIRVKVLNGNL++AL F+QRKM+SSGIE
Sbjct: 1 MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
Query: 61 RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61 RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108
BLAST of ClCG10G012250.2 vs. NCBI nr
Match:
XP_022982723.1 (uncharacterized protein LOC111481507 [Cucurbita maxima])
HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
MNSL+RN+SCSIRSS+HTN L+H QQWRGIRVKVLNGNL++AL F+QRKMQSSGIE
Sbjct: 1 MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60
Query: 61 RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61 RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108
BLAST of ClCG10G012250.2 vs. NCBI nr
Match:
KAA0048381.1 (Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa] >TYJ99860.1 Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa])
HSP 1 Score: 164.9 bits (416), Expect = 5.1e-37
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL +QRKMQSSGIERLIKR
Sbjct: 1 MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60
Query: 61 EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVR 102
EQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKVR
Sbjct: 61 EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKVR 101
BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match:
A0A6J1F3V2 (uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC111441929 PE=3 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 5.0e-38
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
MNSL+RN+SCSIRSS+HTN LQH QQWRGIRVKVLNGNL++AL F+QRKM+SSGIE
Sbjct: 1 MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
Query: 61 RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61 RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108
BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match:
A0A6J1J5L6 (uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507 PE=3 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 6.5e-38
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
MNSL+RN+SCSIRSS+HTN L+H QQWRGIRVKVLNGNL++AL F+QRKMQSSGIE
Sbjct: 1 MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60
Query: 61 RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61 RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108
BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match:
A0A5A7U491 (Ribosomal protein S21 family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00010 PE=3 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL +QRKMQSSGIERLIKR
Sbjct: 1 MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60
Query: 61 EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVR 102
EQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKVR
Sbjct: 61 EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKVR 101
BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match:
A0A1S3CG17 (uncharacterized protein LOC103500324 OS=Cucumis melo OX=3656 GN=LOC103500324 PE=3 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL +QRKMQSSGIERLIKR
Sbjct: 1 MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60
Query: 61 EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVR 102
EQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKVR
Sbjct: 61 EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKVR 101
BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match:
A0A0A0LCD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G689780 PE=3 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 0
Query: 1 MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
MNSLARNISCSIRSSI TN LQHQQWRGIRVKVL G L++AL +QRKMQSSGIERLIKR
Sbjct: 1 MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60
Query: 61 EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
EQ+HHIKNSEKRVLARK LE KI+S+DLARKLKAILIKKVR L
Sbjct: 61 EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVRGL 103
BLAST of ClCG10G012250.2 vs. TAIR 10
Match:
AT3G26360.1 (Ribosomal protein S21 family protein )
HSP 1 Score: 106.3 bits (264), Expect = 2.0e-23
Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = 0
Query: 1 MNSLARNISCSI-RSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIK 60
MN++A+ ++ + R S++ Q QQ RGIRVKV + +LD+AL +Q+KMQSSG+ERLIK
Sbjct: 1 MNTIAKRVTGLVTRPSLNQ---QLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERLIK 60
Query: 61 REQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
Q HHIKNSEK+VLARKNLE +I+S D ARKL++ILIKKVR L
Sbjct: 61 GTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038903160.1 | 2.2e-40 | 92.23 | 30S ribosomal protein S21 [Benincasa hispida] | [more] |
| KAG6581566.1 | 1.0e-37 | 84.26 | Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. soro... | [more] |
| XP_022934889.1 | 1.0e-37 | 84.26 | uncharacterized protein LOC111441929 [Cucurbita moschata] >XP_023526273.1 unchar... | [more] |
| XP_022982723.1 | 1.3e-37 | 84.26 | uncharacterized protein LOC111481507 [Cucurbita maxima] | [more] |
| KAA0048381.1 | 5.1e-37 | 88.12 | Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa] >TYJ99... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1F3V2 | 5.0e-38 | 84.26 | uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC1114419... | [more] |
| A0A6J1J5L6 | 6.5e-38 | 84.26 | uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507... | [more] |
| A0A5A7U491 | 2.5e-37 | 88.12 | Ribosomal protein S21 family protein isoform 1 OS=Cucumis melo var. makuwa OX=11... | [more] |
| A0A1S3CG17 | 2.5e-37 | 88.12 | uncharacterized protein LOC103500324 OS=Cucumis melo OX=3656 GN=LOC103500324 PE=... | [more] |
| A0A0A0LCD1 | 1.2e-36 | 85.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G689780 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G26360.1 | 2.0e-23 | 60.58 | Ribosomal protein S21 family protein | [more] |
