ClCG10G012250.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G012250.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Ribosomal protein S21 family protein isoform 1
Location	CG_Chr10: 26242834 .. 26243250 (-)
Sequence length	417
RNA-Seq Expression	ClCG10G012250.2
Synteny	ClCG10G012250.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATTATCTGCAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTTGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTATATTTTTTCTTTCAACAATAAGCTATTGGGTGATGATGCAATCGTTCGAATGGATGATCATACGGTTCTTCTAGCTTTGCTTATAAGTTGCTTGCCTATTTTTTAA

mRNA sequence

ATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATTATCTGCAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTTGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTATATTTTTTCTTTCAACAATAAGCTATTGGGTGATGATGCAATCGTTCGAATGGATGATCATACGGTTCTTCTAGCTTTGCTTATAAGTTGCTTGCCTATTTTTTAA

Coding sequence (CDS)

ATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATTATCTGCAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTTGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTATATTTTTTCTTTCAACAATAAGCTATTGGGTGATGATGCAATCGTTCGAATGGATGATCATACGGTTCTTCTAGCTTTGCTTATAAGTTGCTTGCCTATTTTTTAA

Protein sequence

MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYLYIFSFNNKLLGDDAIVRMDDHTVLLALLISCLPIF

Homology

[Close]

BLAST of ClCG10G012250.2 vs. NCBI nr
Match: XP_038903160.1 (30S ribosomal protein S21 [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSIHTNYLQHQQ RGIRVKVLNGNL+QAL FM+RKMQ+SGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIHTNYLQHQQLRGIRVKVLNGNLEQALAFMRRKMQASGIERLIKR 60

Query: 61  EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           EQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61  EQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 103

[Close]

BLAST of ClCG10G012250.2 vs. NCBI nr
Match: KAG6581566.1 (Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HTN LQH     QQWRGIRVKVLNGNL++AL F+QRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of ClCG10G012250.2 vs. NCBI nr
Match: XP_022934889.1 (uncharacterized protein LOC111441929 [Cucurbita moschata] >XP_023526273.1 uncharacterized protein LOC111789807 [Cucurbita pepo subsp. pepo] >KAG7018073.1 hypothetical protein SDJN02_19939 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HTN LQH     QQWRGIRVKVLNGNL++AL F+QRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of ClCG10G012250.2 vs. NCBI nr
Match: XP_022982723.1 (uncharacterized protein LOC111481507 [Cucurbita maxima])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HTN L+H     QQWRGIRVKVLNGNL++AL F+QRKMQSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of ClCG10G012250.2 vs. NCBI nr
Match: KAA0048381.1 (Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa] >TYJ99860.1 Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-37
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVR 102
           EQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKVR
Sbjct: 61  EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKVR 101

[Close]

BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match: A0A6J1F3V2 (uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC111441929 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.0e-38
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HTN LQH     QQWRGIRVKVLNGNL++AL F+QRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match: A0A6J1J5L6 (uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.5e-38
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIE 60
           MNSL+RN+SCSIRSS+HTN L+H     QQWRGIRVKVLNGNL++AL F+QRKMQSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           RLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKVR L
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match: A0A5A7U491 (Ribosomal protein S21 family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVR 102
           EQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKVR
Sbjct: 61  EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKVR 101

[Close]

BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match: A0A1S3CG17 (uncharacterized protein LOC103500324 OS=Cucumis melo OX=3656 GN=LOC103500324 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVR 102
           EQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKVR
Sbjct: 61  EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKVR 101

[Close]

BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL
Match: A0A0A0LCD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G689780 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSI TN LQHQQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
           EQ+HHIKNSEKRVLARK LE KI+S+DLARKLKAILIKKVR L
Sbjct: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVRGL 103

[Close]

BLAST of ClCG10G012250.2 vs. TAIR 10
Match: AT3G26360.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-23
Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MNSLARNISCSI-RSSIHTNYLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIK 60
           MN++A+ ++  + R S++    Q QQ RGIRVKV + +LD+AL  +Q+KMQSSG+ERLIK
Sbjct: 1   MNTIAKRVTGLVTRPSLNQ---QLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERLIK 60

Query: 61  REQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRYL 104
             Q HHIKNSEK+VLARKNLE +I+S D ARKL++ILIKKVR L
Sbjct: 61  GTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101

The following BLAST results are available for this feature:

BLAST of ClCG10G012250.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903160.1	2.2e-40	92.23	30S ribosomal protein S21 [Benincasa hispida]	[more]
KAG6581566.1	1.0e-37	84.26	Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022934889.1	1.0e-37	84.26	uncharacterized protein LOC111441929 [Cucurbita moschata] >XP_023526273.1 unchar...	[more]
XP_022982723.1	1.3e-37	84.26	uncharacterized protein LOC111481507 [Cucurbita maxima]	[more]
KAA0048381.1	5.1e-37	88.12	Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa] >TYJ99...	[more]

BLAST of ClCG10G012250.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G012250.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3V2	5.0e-38	84.26	uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1J5L6	6.5e-38	84.26	uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507...	[more]
A0A5A7U491	2.5e-37	88.12	Ribosomal protein S21 family protein isoform 1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CG17	2.5e-37	88.12	uncharacterized protein LOC103500324 OS=Cucumis melo OX=3656 GN=LOC103500324 PE=...	[more]
A0A0A0LCD1	1.2e-36	85.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G689780 PE=3 SV=1	[more]

BLAST of ClCG10G012250.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26360.1	2.0e-23	60.58	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 31..84 e-value: 6.3E-13 score: 48.3
None	No IPR available	PANTHER	PTHR37228	RIBOSOMAL PROTEIN S21 FAMILY PROTEIN	coord: 1..101
None	No IPR available	PANTHER	PTHR37228:SF1	RIBOSOMAL PROTEIN S21 FAMILY PROTEIN	coord: 1..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G012250	ClCG10G012250	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G012250.2-exon	ClCG10G012250.2-exon-CG_Chr10:26242834..26243250	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G012250.2-cds	ClCG10G012250.2-cds-CG_Chr10:26242834..26243250	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G012250.2	ClCG10G012250.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome