ClCG10G002010.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G002010.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Ribosomal protein S4
Location	CG_Chr10: 2210882 .. 2211392 (+)
Sequence length	216
RNA-Seq Expression	ClCG10G002010.1
Synteny	ClCG10G002010.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGAGATTTGAGTATCTAATACTTCTACTACACAGTATATCAAAGAAGTAATTATAAAAAAATTATTACTATATGAGCTTCAATCATATCATATGCTTTGATGGTAACAAACATTTATTTTATTGATAATTCTAGTGTCTTAAAGTGTGGATAGTATAGAGCTTAAAGAAACGATTTCGATTCACTTTTAATCGCTCAAATTGGATATTAAAACGAAAATATTGGGGCCAAAGGAAAATTGAAAGACGGATTCAACAAGATATGCCTTGCCTGCATTAAGATTTCAAACTTGTCGTCTACTTTTAGGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTTCGAAAATTGAGAAACAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAGAATATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTAAATCATGGGGATTTACCCATCACAGAGATGCACAGTTCAGTGCCACATTAA

mRNA sequence

ATGGTTAGAGATTTGAGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTTCGAAAATTGAGAAACAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAGAATATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTAAATCATGGGGATTTACCCATCACAGAGATGCACAGTTCAGTGCCACATTAA

Coding sequence (CDS)

ATGGTTAGAGATTTGAGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTTCGAAAATTGAGAAACAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAGAATATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTAAATCATGGGGATTTACCCATCACAGAGATGCACAGTTCAGTGCCACATTAA

Protein sequence

MVRDLRNVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMHSSVPH

Homology

[Close]

BLAST of ClCG10G002010.1 vs. NCBI nr
Match: YP_009498123.1 (ribosomal protein S4 [Senna tora] >AWW13925.1 ribosomal protein S4 [Senna tora])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPLNHGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLNHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. NCBI nr
Match: YP_009913620.1 (ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa acutangula])

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 5  LRNVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITE 64
          L NVRNRELTIIQRRILRKLRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITE
Sbjct: 20 LGNVRNRELTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITE 79

Query: 65 MH 67
          MH
Sbjct: 80 MH 81

[Close]

BLAST of ClCG10G002010.1 vs. NCBI nr
Match: YP_009704760.1 (ribosomal protein S4 [Haematoxylum brasiletto] >QEX95963.1 ribosomal protein S4 [Haematoxylum brasiletto])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. NCBI nr
Match: YP_009704681.1 (ribosomal protein S4 [Tamarindus indica] >QEX95884.1 ribosomal protein S4 [Tamarindus indica])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. NCBI nr
Match: QWQ49878.1 (ribosomal protein S4 [Zelkova schneideriana])

HSP 1 Score: 107.8 bits (268), Expect = 3.8e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. ExPASy Swiss-Prot
Match: Q31708 (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-18
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSI-KRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEM 66
          NV NRELTIIQRRILR+LRN+KRSI KRKIYP++YL SYIQ QTTRKLP  +GDLPITEM
Sbjct: 28 NVWNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSYIQLQTTRKLPFFYGDLPITEM 87

[Close]

BLAST of ClCG10G002010.1 vs. ExPASy TrEMBL
Match: A0A2Z4HGM2 (Ribosomal protein S4 OS=Senna tora OX=362788 GN=rps4 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPLNHGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLNHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. ExPASy TrEMBL
Match: A0A7D6BZG8 (Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.2e-21
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 5  LRNVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITE 64
          L NVRNRELTIIQRRILRKLRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITE
Sbjct: 20 LGNVRNRELTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITE 79

Query: 65 MH 67
          MH
Sbjct: 80 MH 81

[Close]

BLAST of ClCG10G002010.1 vs. ExPASy TrEMBL
Match: A0A6A5KZD0 (S4 RNA-binding domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00002123 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. ExPASy TrEMBL
Match: A0A072TH07 (Ribosomal protein S4 OS=Medicago truncatula OX=3880 GN=rps4 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITEMH
Sbjct: 12 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMH 71

[Close]

BLAST of ClCG10G002010.1 vs. ExPASy TrEMBL
Match: A0A385G290 (Ribosomal protein S4 OS=Ammopiptanthus mongolicus OX=126911 GN=rps4 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSIKRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEMH 66
          NVRNRELTIIQRRILR+LRNKKRSIKRKIYPRE LNSYIQSQTTRKLPL HGDLPITEMH
Sbjct: 15 NVRNRELTIIQRRILRRLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMH 74

[Close]

BLAST of ClCG10G002010.1 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSI-KRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEM 66
          NVRNRELTIIQRRILR+LRN+KRSI KRKIYP++YL SYIQ QTTRKLPL HGDLPITEM
Sbjct: 28 NVRNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSYIQLQTTRKLPLFHGDLPITEM 87

[Close]

BLAST of ClCG10G002010.1 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 7  NVRNRELTIIQRRILRKLRNKKRSI-KRKIYPREYLNSYIQSQTTRKLPLNHGDLPITEM 66
          NVRNRELTIIQRRILR+LRN+KRSI KRKIYP++YL SYIQ QTTRKLPL HGDLPITEM
Sbjct: 28 NVRNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSYIQLQTTRKLPLFHGDLPITEM 87

The following BLAST results are available for this feature:

BLAST of ClCG10G002010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009498123.1	3.4e-21	96.67	ribosomal protein S4 [Senna tora] >AWW13925.1 ribosomal protein S4 [Senna tora]	[more]
YP_009913620.1	1.7e-20	95.16	ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa ...	[more]
YP_009704760.1	3.8e-20	95.00	ribosomal protein S4 [Haematoxylum brasiletto] >QEX95963.1 ribosomal protein S4 ...	[more]
YP_009704681.1	3.8e-20	95.00	ribosomal protein S4 [Tamarindus indica] >QEX95884.1 ribosomal protein S4 [Tamar...	[more]
QWQ49878.1	3.8e-20	95.00	ribosomal protein S4 [Zelkova schneideriana]	[more]

BLAST of ClCG10G002010.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q31708	4.8e-18	81.97	Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1...	[more]

BLAST of ClCG10G002010.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z4HGM2	1.7e-21	96.67	Ribosomal protein S4 OS=Senna tora OX=362788 GN=rps4 PE=3 SV=1	[more]
A0A7D6BZG8	8.2e-21	95.16	Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1	[more]
A0A6A5KZD0	1.8e-20	95.00	S4 RNA-binding domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_0000212...	[more]
A0A072TH07	1.8e-20	95.00	Ribosomal protein S4 OS=Medicago truncatula OX=3880 GN=rps4 PE=3 SV=1	[more]
A0A385G290	1.8e-20	95.00	Ribosomal protein S4 OS=Ammopiptanthus mongolicus OX=126911 GN=rps4 PE=3 SV=1	[more]

BLAST of ClCG10G002010.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07734.1	2.8e-21	86.89	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	2.8e-21	86.89	mitochondrial ribosomal protein S4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 9..67
None	No IPR available	PANTHER	PTHR11831:SF30	RIBOSOMAL PROTEIN S4-RELATED	coord: 9..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G002010	ClCG10G002010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G002010.1-exon	ClCG10G002010.1-exon-CG_Chr10:2210882..2210897	exon
ClCG10G002010.1-exon	ClCG10G002010.1-exon-CG_Chr10:2211193..2211392	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G002010.1-cds	ClCG10G002010.1-cds-CG_Chr10:2210882..2210897	CDS
ClCG10G002010.1-cds	ClCG10G002010.1-cds-CG_Chr10:2211193..2211392	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G002010.1	ClCG10G002010.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding