ClCG10G001710.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G001710.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LINE-1 retrotransposable element ORF2 protein
Location	CG_Chr10: 1824941 .. 1826859 (-)
Sequence length	405
RNA-Seq Expression	ClCG10G001710.1
Synteny	ClCG10G001710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCTAGAAATTGGAGTCAGCTTTGTAAACTCGAGTGGCTTTCAAAAGGTGACGAAAACGCAACTTATTTTCATAAGGTTTGTTTGGCACGACGTCGTTTCAACTTTATATCAGAGATTCAAAACTCGCAAGGTATCAATCAATTCTTTGATTACAACATTCAGAAACCTTAAGCTTACCTTGATCACTTCAATGACATTTACAGAGGACATTCTATTGCTCTTGCTCTTGGTTGGTTAGAAATTTTTACTAGCGACCTATCAGTGAAGAGCAAGCCAACAACCTTATTCAACCTTTCATTGAAGCTAAAGTTTTTTATTGTATCAAGCTCCTTGGTAGCAACAAAATCCCAGGATCAGATGGCTTTACGATTGAATTCTTTAAAAAATACTGGAACAACTTCAAATGTGAGATTATGGATTTGTTCCAAGATTTTTTTCTTGAATAAGATTGTGAATAAATCCCTGAATGCTACATATGTTGCTTTGATTCCTAAAAAGGTGCATTGCACTAAAGTTTCAAATTACCAACCTATAAGCTTGACTACAAACATTTACAAGATCTTGGCCAAGGTTCTCTCTGAACGTATCAAACAAGTTCTTCCCTTCACCACTACTTTACAACAATCTACATTTGTCCATGGAAGACAAATTCTTGATCCTATTATTTTTGCTAGTGAACTTGTCGATTACTGGCGTTGTAGTAAACAAAAAGGCTTGGTTATCAAATTAGACATTGAAAAAGCTTTTGACAAGGTGAACTGGAATTTTCTTCTATCTATTCGAGATTTAAAGGCTTTCATATCCATTGGGTCGATTGGATCTGTGCTTTTATATCTTATGTTAATTACTCTATTTTTCTGAATGGTAGACCAAGAGGATATATAGAAGCTAATAGAGGCATTTGGCAAGGAGACCCTCTTTCGCCCTTTCTATTCATTATTGCCATGGATTACCTCACTATGTTACTTGAAGAAGCTCAACATAAAGAACTCATCACGGGCCTTCGTTCTACTGATGGTAAGATGCAACTTAACCATCTTTTTATTTGCAGATGACGTATTGCTTTTCTCCAAGGCGGATATTATAGAGCTTAAAAAACTCAAATCTATCATCAGTATCTTTGAGGTTGCCTCAAGCTTGAAGATCAATCTCTAGAAGTCTACTTTAATGTGGTCTTTGCATTTACTTCTTAGGTTGAAGCTTTATGGGACTATCCTTCAACCATCCTTCCTGTCATGTACCTTGGCATGCCTTTTGAAGGTAATCCAAAATTCCCTACATTCTGAATTGGAAGGAAGTTGACTTCTTGGAAGTACTCTTACATCTCCAAAGGTGGTCGTTTGACATTAATACAAGGTGTGCTTAGCAACCTACCTACTTATTACTTGTCTACCTTTCAAGCTCCTATGTCCATCTGTAAAACTATTGAAAATTTGATGCGAAATTTTCTTTGGAAAGGTTCAAACAAAGATGGTGGATCACACCTGGTTAGATGAGATATTAATTGTTACTTTACCCAAAGACAGGAAGGGCCTTGACATCGATAAGATCAAGGCCACTAATATTGCTCTTCTTAGCAAATAGATATGGCGTTAGTTAACTGAAAAAGATAGTCTTTGAAAGCTCTTCATTGAGGCTAAGTTTGAAGTTGAACATACGAAGACCATTCCGAGTATCTGTAAATATAAAAGCTCAAAATCCCTATGGTTCCACATTATAAAATAACAAAATTTTATTCTTTAGCATTTTGTTTGGCACATAAAAGGTGGGGAAGACACCCTATTTTGGTTCCATAGCTGGTCCACAAGTGGAATTCTCAACCGAATTTTGCCTAGATTCTTTGCTTTATCTAGCAATCCATTGATGACAGTTAGAGAAGCGTGGAACCTGATTCTTGCTCAGTGGAATTTCTAG

mRNA sequence

ATGAGGCTAGAAATTGGAGTCAGCTTTGTAAACTCGAGTGGCTTTCAAAAGGTGACGAAAACGCAACTTATTTTCATAAGGTTTGTTTGGCACGACGTCGTTTCAACTTTATATCAGAGATTCAAAACTCGCAAGGTATCAATCAATTCTTTGATTACAACATTCAGAAACCTTAAGCTTACCTTGATCACTTCAATGACATTTACAGAGGACATTCTATTGCTCTTGCTCTTGCATTTTGTTTGGCACATAAAAGGTGGGGAAGACACCCTATTTTGGTTCCATAGCTGGTCCACAAGTGGAATTCTCAACCGAATTTTGCCTAGATTCTTTGCTTTATCTAGCAATCCATTGATGACAGTTAGAGAAGCGTGGAACCTGATTCTTGCTCAGTGGAATTTCTAG

Coding sequence (CDS)

ATGAGGCTAGAAATTGGAGTCAGCTTTGTAAACTCGAGTGGCTTTCAAAAGGTGACGAAAACGCAACTTATTTTCATAAGGTTTGTTTGGCACGACGTCGTTTCAACTTTATATCAGAGATTCAAAACTCGCAAGGTATCAATCAATTCTTTGATTACAACATTCAGAAACCTTAAGCTTACCTTGATCACTTCAATGACATTTACAGAGGACATTCTATTGCTCTTGCTCTTGCATTTTGTTTGGCACATAAAAGGTGGGGAAGACACCCTATTTTGGTTCCATAGCTGGTCCACAAGTGGAATTCTCAACCGAATTTTGCCTAGATTCTTTGCTTTATCTAGCAATCCATTGATGACAGTTAGAGAAGCGTGGAACCTGATTCTTGCTCAGTGGAATTTCTAG

Protein sequence

MRLEIGVSFVNSSGFQKVTKTQLIFIRFVWHDVVSTLYQRFKTRKVSINSLITTFRNLKLTLITSMTFTEDILLLLLLHFVWHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWNF

Homology

[Close]

BLAST of ClCG10G001710.1 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 82  WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
           W +  GED  FW  +W+ +  L+ ++PR FALS+N   +V++ WN  L  WN
Sbjct: 749 WKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWN 800

[Close]

BLAST of ClCG10G001710.1 vs. NCBI nr
Match: TYK03140.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 82  WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
           W +  G+   FW+ +WS  G L+   PR FALS +  ++V++AWN +  QWN
Sbjct: 798 WDLNNGDQISFWYSNWSLEGRLSTAYPRLFALSLDKEISVKDAWNTLDNQWN 849

[Close]

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5D3BVM7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00150 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 82  WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
           W +  G+   FW+ +WS  G L+   PR FALS +  ++V++AWN +  QWN
Sbjct: 798 WDLNNGDQISFWYSNWSLEGRLSTAYPRLFALSLDKEISVKDAWNTLDNQWN 849

[Close]

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 82  WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
           W +  GED  FW  +W+ +  L+ ++PR FALS+N   +V++ WN  L  WN
Sbjct: 749 WKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWN 800

[Close]

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.9e-04
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 82  WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
           W +  GED  FW  +W+ +  L+  +PR FALS+N   +V++ WN  L  WN
Sbjct: 655 WKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWN 706

[Close]

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5D3C104 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00250 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 82  WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
           W +  G+   FW+ +WS  G L+   PR FAL+    ++V++AWN    QWN
Sbjct: 407 WELNNGDQISFWYSNWSQEGHLSTAYPRLFALTLGKEISVKDAWNTFDNQWN 458

[Close]

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 82   WHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWN 134
            W +  G+   FW+ +WS  G L+   PR FAL+ +  ++V++AWN    QWN
Sbjct: 1595 WDLNNGDQISFWYSNWSQEGRLSTAYPRLFALTLDKEISVKDAWNTFDNQWN 1646

The following BLAST results are available for this feature:

BLAST of ClCG10G001710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041397.1	4.2e-04	40.38	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK03140.1	4.2e-04	40.38	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG10G001710.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVM7	2.0e-04	40.38	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	2.0e-04	40.38	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	5.9e-04	40.38	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C104	7.8e-04	38.46	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BLV7	7.8e-04	38.46	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G001710	ClCG10G001710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G001710.1-exon	ClCG10G001710.1-exon-CG_Chr10:1824941..1825111	exon
ClCG10G001710.1-exon	ClCG10G001710.1-exon-CG_Chr10:1826626..1826859	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G001710.1-cds	ClCG10G001710.1-cds-CG_Chr10:1824941..1825111	CDS
ClCG10G001710.1-cds	ClCG10G001710.1-cds-CG_Chr10:1826626..1826859	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G001710.1	ClCG10G001710.1-protein	polypeptide