ClCG10G001710.1 (mRNA) Watermelon (Charleston Gray) v2.5
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Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGCTAGAAATTGGAGTCAGCTTTGTAAACTCGAGTGGCTTTCAAAAGGTGACGAAAACGCAACTTATTTTCATAAGGTTTGTTTGGCACGACGTCGTTTCAACTTTATATCAGAGATTCAAAACTCGCAAGGTATCAATCAATTCTTTGATTACAACATTCAGAAACCTTAAGCTTACCTTGATCACTTCAATGACATTTACAGAGGACATTCTATTGCTCTTGCTCTTGGTTGGTTAGAAATTTTTACTAGCGACCTATCAGTGAAGAGCAAGCCAACAACCTTATTCAACCTTTCATTGAAGCTAAAGTTTTTTATTGTATCAAGCTCCTTGGTAGCAACAAAATCCCAGGATCAGATGGCTTTACGATTGAATTCTTTAAAAAATACTGGAACAACTTCAAATGTGAGATTATGGATTTGTTCCAAGATTTTTTTCTTGAATAAGATTGTGAATAAATCCCTGAATGCTACATATGTTGCTTTGATTCCTAAAAAGGTGCATTGCACTAAAGTTTCAAATTACCAACCTATAAGCTTGACTACAAACATTTACAAGATCTTGGCCAAGGTTCTCTCTGAACGTATCAAACAAGTTCTTCCCTTCACCACTACTTTACAACAATCTACATTTGTCCATGGAAGACAAATTCTTGATCCTATTATTTTTGCTAGTGAACTTGTCGATTACTGGCGTTGTAGTAAACAAAAAGGCTTGGTTATCAAATTAGACATTGAAAAAGCTTTTGACAAGGTGAACTGGAATTTTCTTCTATCTATTCGAGATTTAAAGGCTTTCATATCCATTGGGTCGATTGGATCTGTGCTTTTATATCTTATGTTAATTACTCTATTTTTCTGAATGGTAGACCAAGAGGATATATAGAAGCTAATAGAGGCATTTGGCAAGGAGACCCTCTTTCGCCCTTTCTATTCATTATTGCCATGGATTACCTCACTATGTTACTTGAAGAAGCTCAACATAAAGAACTCATCACGGGCCTTCGTTCTACTGATGGTAAGATGCAACTTAACCATCTTTTTATTTGCAGATGACGTATTGCTTTTCTCCAAGGCGGATATTATAGAGCTTAAAAAACTCAAATCTATCATCAGTATCTTTGAGGTTGCCTCAAGCTTGAAGATCAATCTCTAGAAGTCTACTTTAATGTGGTCTTTGCATTTACTTCTTAGGTTGAAGCTTTATGGGACTATCCTTCAACCATCCTTCCTGTCATGTACCTTGGCATGCCTTTTGAAGGTAATCCAAAATTCCCTACATTCTGAATTGGAAGGAAGTTGACTTCTTGGAAGTACTCTTACATCTCCAAAGGTGGTCGTTTGACATTAATACAAGGTGTGCTTAGCAACCTACCTACTTATTACTTGTCTACCTTTCAAGCTCCTATGTCCATCTGTAAAACTATTGAAAATTTGATGCGAAATTTTCTTTGGAAAGGTTCAAACAAAGATGGTGGATCACACCTGGTTAGATGAGATATTAATTGTTACTTTACCCAAAGACAGGAAGGGCCTTGACATCGATAAGATCAAGGCCACTAATATTGCTCTTCTTAGCAAATAGATATGGCGTTAGTTAACTGAAAAAGATAGTCTTTGAAAGCTCTTCATTGAGGCTAAGTTTGAAGTTGAACATACGAAGACCATTCCGAGTATCTGTAAATATAAAAGCTCAAAATCCCTATGGTTCCACATTATAAAATAACAAAATTTTATTCTTTAGCATTTTGTTTGGCACATAAAAGGTGGGGAAGACACCCTATTTTGGTTCCATAGCTGGTCCACAAGTGGAATTCTCAACCGAATTTTGCCTAGATTCTTTGCTTTATCTAGCAATCCATTGATGACAGTTAGAGAAGCGTGGAACCTGATTCTTGCTCAGTGGAATTTCTAGATGAGGCTAGAAATTGGAGTCAGCTTTGTAAACTCGAGTGGCTTTCAAAAGGTGACGAAAACGCAACTTATTTTCATAAGGTTTGTTTGGCACGACGTCGTTTCAACTTTATATCAGAGATTCAAAACTCGCAAGGTATCAATCAATTCTTTGATTACAACATTCAGAAACCTTAAGCTTACCTTGATCACTTCAATGACATTTACAGAGGACATTCTATTGCTCTTGCTCTTGCATTTTGTTTGGCACATAAAAGGTGGGGAAGACACCCTATTTTGGTTCCATAGCTGGTCCACAAGTGGAATTCTCAACCGAATTTTGCCTAGATTCTTTGCTTTATCTAGCAATCCATTGATGACAGTTAGAGAAGCGTGGAACCTGATTCTTGCTCAGTGGAATTTCTAG ATGAGGCTAGAAATTGGAGTCAGCTTTGTAAACTCGAGTGGCTTTCAAAAGGTGACGAAAACGCAACTTATTTTCATAAGGTTTGTTTGGCACGACGTCGTTTCAACTTTATATCAGAGATTCAAAACTCGCAAGGTATCAATCAATTCTTTGATTACAACATTCAGAAACCTTAAGCTTACCTTGATCACTTCAATGACATTTACAGAGGACATTCTATTGCTCTTGCTCTTGCATTTTGTTTGGCACATAAAAGGTGGGGAAGACACCCTATTTTGGTTCCATAGCTGGTCCACAAGTGGAATTCTCAACCGAATTTTGCCTAGATTCTTTGCTTTATCTAGCAATCCATTGATGACAGTTAGAGAAGCGTGGAACCTGATTCTTGCTCAGTGGAATTTCTAG MRLEIGVSFVNSSGFQKVTKTQLIFIRFVWHDVVSTLYQRFKTRKVSINSLITTFRNLKLTLITSMTFTEDILLLLLLHFVWHIKGGEDTLFWFHSWSTSGILNRILPRFFALSSNPLMTVREAWNLILAQWNF Homology
BLAST of ClCG10G001710.1 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 55.5 bits (132), Expect = 4.2e-04 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of ClCG10G001710.1 vs. NCBI nr
Match: TYK03140.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 55.5 bits (132), Expect = 4.2e-04 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5D3BVM7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00150 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 5.9e-04 Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 0
BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5D3C104 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00250 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04 Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 0
BLAST of ClCG10G001710.1 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04 Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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