ClCG09G012340.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G012340.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ATP synthase subunit alpha, chloroplastic
Location	CG_Chr09: 14030014 .. 14030542 (-)
Sequence length	465
RNA-Seq Expression	ClCG09G012340.1
Synteny	ClCG09G012340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTAGGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAATAATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTGTAAAAGCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGGTAAGGCAAATAGAGCTTTTGCACATTTTTGTTAATCCATGAACAAGATCTATATAGACACATAGGCCCATGGATCCATACATCTCGATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

mRNA sequence

ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTAGGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAATAATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGACACATAGGCCCATGGATCCATACATCTCGATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

Coding sequence (CDS)

ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTAGGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAATAATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGACACATAGGCCCATGGATCCATACATCTCGATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

Protein sequence

MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGGLLIHKREVLNGKSCSDTSLGRNMAFKLSYELVDVANKSGDAIHKKEETHRMTHRPMDPYISIRKESIEKERIRID

Homology

[Close]

BLAST of ClCG09G012340.1 vs. NCBI nr
Match: DAD29483.1 (TPA_asm: hypothetical protein HUJ06_030951 [Nelumbo nucifera])

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-31
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKREVL--NGKSCSDT 97
          IGI LNLESNNVGVVLMG GL+I +   +  N  +CSDT
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQEGNSIKANRMNCSDT 99

[Close]

BLAST of ClCG09G012340.1 vs. NCBI nr
Match: PHU09444.1 (Photosystem II protein D1 [Capsicum chinense])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIREHIEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIREHIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVL+G GLLI +R
Sbjct: 61 IGIALNLESNNVGVVLIGDGLLIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. NCBI nr
Match: YP_009509914.1 (ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica] >AXF46646.1 ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. NCBI nr
Match: YP_009318069.1 (ATP synthase CF1 alpha subunit [Corylus fargesii] >YP_009318148.1 ATP synthase CF1 alpha subunit [Corylus avellana] >YP_009318225.1 ATP synthase CF1 alpha subunit [Corylus heterophylla] >YP_009331465.1 ATP synthase CF1 alpha subunit [Corylus chinensis] >YP_009509831.1 ATP synthase CF1 alpha subunit [Corylus mandshurica] >YP_009509997.1 ATP synthase CF1 alpha subunit [Corylus yunnanensis] >YP_009559724.1 ATP synthase CF1 alpha subunit [Corylus wangii] >YP_009714763.1 ATP synthase CF1 alpha subunit [Corylus americana] >YP_009714847.1 ATP synthase CF1 alpha subunit [Corylus ferox] >YP_009714931.1 ATP synthase CF1 alpha subunit [Corylus sieboldiana] >YP_009715015.1 ATP synthase CF1 alpha subunit [Corylus colurna] >YP_009715099.1 ATP synthase CF1 alpha subunit [Corylus jacquemontii] >YP_009715183.1 ATP synthase CF1 alpha subunit [Corylus cornuta] >AXZ70272.1 ATP synthase CF1 alpha subunit [Corylus heterophylla var. sutchuenensis] >QGK87235.1 ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica] >QGK87319.1 ATP synthase CF1 alpha subunit [Corylus kweichowensis var. brevipes] >QGK87739.1 ATP synthase CF1 alpha subunit [Corylus cornuta var. californica] >QXQ00392.1 ATP synthase CF1 alpha subunit [Corylus kweichowensis])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. NCBI nr
Match: YP_009967243.1 (ATP synthase CF1 alpha subunit [Anthurium huixtlense] >QIP53297.1 ATP synthase CF1 alpha subunit [Anthurium huixtlense])

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-30
Identity = 79/107 (73.83%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
           MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1   MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61  IGITLNLESNNVGVVLMG-GLLIHKREVLNGK------SCSDTSLGR 101
           IGI LNLESNNVGVVLMG GL+I +R  +         S S+  LGR
Sbjct: 61  IGIALNLESNNVGVVLMGDGLMIQERSSVKATGRIAQISVSEAYLGR 107

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy Swiss-Prot
Match: Q49L13 (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy Swiss-Prot
Match: B1NWD5 (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy Swiss-Prot
Match: Q14FH2 (ATP synthase subunit alpha, chloroplastic OS=Populus alba OX=43335 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy Swiss-Prot
Match: A4GYP3 (ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpA PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy Swiss-Prot
Match: Q8S8Y3 (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-32
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GLLI +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLLIQE 85

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy TrEMBL
Match: A0A2G3BSI9 (Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_21304 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.6e-31
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIREHIEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIREHIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVL+G GLLI +R
Sbjct: 61 IGIALNLESNNVGVVLIGDGLLIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy TrEMBL
Match: A0A385KBW2 (ATP synthase subunit alpha, chloroplastic OS=Corylus heterophylla var. sutchuenensis OX=126982 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy TrEMBL
Match: A0A345BAT7 (ATP synthase subunit alpha, chloroplastic OS=Corylus mandshurica OX=139401 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy TrEMBL
Match: A0A1I9RG22 (ATP synthase subunit alpha, chloroplastic OS=Corylus avellana OX=13451 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. ExPASy TrEMBL
Match: A0A1I9RFU2 (ATP synthase subunit alpha, chloroplastic OS=Corylus fargesii OX=554072 GN=atpA PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVKVVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHKR 86
          IGI LNLESNNVGVVLMG GL+I +R
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQER 86

[Close]

BLAST of ClCG09G012340.1 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-33
Identity = 74/85 (87.06%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGT 60
          MVTIRADEISNIIRE IEQY+REV IVNTGTVLQVGDGIA IY LDEVM GELVEFEEGT
Sbjct: 1  MVTIRADEISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 60

Query: 61 IGITLNLESNNVGVVLMG-GLLIHK 85
          IGI LNLESNNVGVVLMG GL+I +
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQE 85

[Close]

BLAST of ClCG09G012340.1 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 5   RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGIT 64
           RA E++N+    I  +    ++   G V+ VGDGIA +Y L+E+  GE+V F  G  G+ 
Sbjct: 276 RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 335

Query: 65  LNLESNNVGVVLMGG 80
           LNLE+ NVG+V+ GG
Sbjct: 336 LNLENENVGIVVFGG 350

[Close]

BLAST of ClCG09G012340.1 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 5  RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGIT 64
          RA E++N+    I  +    ++   G V+ VGDGIA +Y L+E+  GE+V F  G  G+ 
Sbjct: 6  RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 65

Query: 65 LNLESNNVGVVLMGG 80
          LNLE+ NVG+V+ GG
Sbjct: 66 LNLENENVGIVVFGG 80

[Close]

BLAST of ClCG09G012340.1 vs. TAIR 10
Match: ATCG01240.1 (ribosomal protein S7 )

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 99  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM 131
           GRNMAFKLS ELVD A  SGDAI KKEETHRM
Sbjct: 113 GRNMAFKLSSELVDAAKGSGDAIRKKEETHRM 144

[Close]

BLAST of ClCG09G012340.1 vs. TAIR 10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 99  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM 131
           GRNMAFKLS ELVD A  SGDAI KKEETHRM
Sbjct: 113 GRNMAFKLSSELVDAAKGSGDAIRKKEETHRM 144

The following BLAST results are available for this feature:

BLAST of ClCG09G012340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
DAD29483.1	6.1e-31	79.80	TPA_asm: hypothetical protein HUJ06_030951 [Nelumbo nucifera]	[more]
PHU09444.1	1.4e-30	88.37	Photosystem II protein D1 [Capsicum chinense]	[more]
YP_009509914.1	2.3e-30	87.21	ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica] >AXF46646.1 ATP sy...	[more]
YP_009318069.1	2.3e-30	87.21	ATP synthase CF1 alpha subunit [Corylus fargesii] >YP_009318148.1 ATP synthase C...	[more]
YP_009967243.1	3.0e-30	73.83	ATP synthase CF1 alpha subunit [Anthurium huixtlense] >QIP53297.1 ATP synthase C...	[more]

BLAST of ClCG09G012340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49L13	8.8e-33	88.24	ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
B1NWD5	8.8e-33	88.24	ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA P...	[more]
Q14FH2	8.8e-33	88.24	ATP synthase subunit alpha, chloroplastic OS=Populus alba OX=43335 GN=atpA PE=3 ...	[more]
A4GYP3	8.8e-33	88.24	ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpA...	[more]
Q8S8Y3	2.0e-32	88.24	ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA ...	[more]

BLAST of ClCG09G012340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3BSI9	6.6e-31	88.37	Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_21304 PE=3 SV=1	[more]
A0A385KBW2	1.1e-30	87.21	ATP synthase subunit alpha, chloroplastic OS=Corylus heterophylla var. sutchuene...	[more]
A0A345BAT7	1.1e-30	87.21	ATP synthase subunit alpha, chloroplastic OS=Corylus mandshurica OX=139401 GN=at...	[more]
A0A1I9RG22	1.1e-30	87.21	ATP synthase subunit alpha, chloroplastic OS=Corylus avellana OX=13451 GN=atpA P...	[more]
A0A1I9RFU2	1.1e-30	87.21	ATP synthase subunit alpha, chloroplastic OS=Corylus fargesii OX=554072 GN=atpA ...	[more]

BLAST of ClCG09G012340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00120.1	3.1e-33	87.06	ATP synthase subunit alpha	[more]
AT2G07698.1	1.4e-12	42.67	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	1.4e-12	42.67	ATP synthase subunit 1	[more]
ATCG01240.1	5.9e-08	84.38	ribosomal protein S7	[more]
ATCG00900.1	5.9e-08	84.38	Ribosomal protein S7p/S5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	1.10.455.10	Ribosomal protein S7 domain	coord: 93..133 e-value: 4.8E-7 score: 31.6
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	47973	Ribosomal protein S7	coord: 98..130
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 99..131 e-value: 7.7E-7 score: 28.9
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 2..92 e-value: 7.5E-27 score: 94.9
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 29..79 e-value: 1.7E-12 score: 47.7
None	No IPR available	PANTHER	PTHR48082:SF5	ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC	coord: 2..139
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 2..139
None	No IPR available	CDD	cd18116	ATP-synt_F1_alpha_N	coord: 28..78 e-value: 2.29989E-21 score: 79.8049
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 11..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG09G012340	ClCG09G012340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG09G012340.1-exon	ClCG09G012340.1-exon-CG_Chr09:14030014..14030088	exon
ClCG09G012340.1-exon	ClCG09G012340.1-exon-CG_Chr09:14030146..14030272	exon
ClCG09G012340.1-exon	ClCG09G012340.1-exon-CG_Chr09:14030280..14030542	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG09G012340.1-cds	ClCG09G012340.1-cds-CG_Chr09:14030014..14030088	CDS
ClCG09G012340.1-cds	ClCG09G012340.1-cds-CG_Chr09:14030146..14030272	CDS
ClCG09G012340.1-cds	ClCG09G012340.1-cds-CG_Chr09:14030280..14030542	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG09G012340.1	ClCG09G012340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism