ClCG02G002560.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G002560.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	glutamic acid-rich protein-like
Location	CG_Chr02: 2607973 .. 2608392 (+)
Sequence length	420
RNA-Seq Expression	ClCG02G002560.2
Synteny	ClCG02G002560.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCATCACTTTGAGAAAATACTATGATAACTTGCAGACTGTATCTCCGAATGCTGCTCTTGTAGAAGACACAACGGTTCTTAAAGAGACAACCACAAAAGAAGAAGTTGAGAAGCTACCGCCACCAGCCGATACATCAGAAGAGAAGGTGAAGGAAGAAGAGGGTGATAAAGTTGAAGTTGTTGCAAAATTATCTGATTTAGAAGTAGTTGCTCCAAAAGAAAGAAATGAACCAGAGACCGAAGAGGAAGAGGAGGAAGAAGAGGAGGTTGTAATCCTGACGGATGATGAAGAGGCTGAAGAAGAATATAAAGAAGTTGAAGAGGTGGTAGCGAAGGAAGAAAACAACAAGCCCGACGAGACATCGGCCCTAGAAGTCGAAGTTGAAAAAGAAAACCCAACAAAAAAGACAGAGTAA

mRNA sequence

ATGATCATCACTTTGAGAAAATACTATGATAACTTGCAGACTGTATCTCCGAATGCTGCTCTTGTAGAAGACACAACGGTTCTTAAAGAGACAACCACAAAAGAAGAAGTTGAGAAGCTACCGCCACCAGCCGATACATCAGAAGAGAAGGTGAAGGAAGAAGAGGGTGATAAAGTTGAAGTTGTTGCAAAATTATCTGATTTAGAAGTAGTTGCTCCAAAAGAAAGAAATGAACCAGAGACCGAAGAGGAAGAGGAGGAAGAAGAGGAGGTTGTAATCCTGACGGATGATGAAGAGGCTGAAGAAGAATATAAAGAAGTTGAAGAGGTGGTAGCGAAGGAAGAAAACAACAAGCCCGACGAGACATCGGCCCTAGAAGTCGAAGTTGAAAAAGAAAACCCAACAAAAAAGACAGAGTAA

Coding sequence (CDS)

ATGATCATCACTTTGAGAAAATACTATGATAACTTGCAGACTGTATCTCCGAATGCTGCTCTTGTAGAAGACACAACGGTTCTTAAAGAGACAACCACAAAAGAAGAAGTTGAGAAGCTACCGCCACCAGCCGATACATCAGAAGAGAAGGTGAAGGAAGAAGAGGGTGATAAAGTTGAAGTTGTTGCAAAATTATCTGATTTAGAAGTAGTTGCTCCAAAAGAAAGAAATGAACCAGAGACCGAAGAGGAAGAGGAGGAAGAAGAGGAGGTTGTAATCCTGACGGATGATGAAGAGGCTGAAGAAGAATATAAAGAAGTTGAAGAGGTGGTAGCGAAGGAAGAAAACAACAAGCCCGACGAGACATCGGCCCTAGAAGTCGAAGTTGAAAAAGAAAACCCAACAAAAAAGACAGAGTAA

Protein sequence

MIITLRKYYDNLQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAKLSDLEVVAPKERNEPETEEEEEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEVEKENPTKKTE

Homology

[Close]

BLAST of ClCG02G002560.2 vs. NCBI nr
Match: XP_023511645.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAKLSDLEVV 71
           L T+SPNAAL+E+T VLKET  KEEVE+  PPA T EEK ++EE  +VE VA+    E  
Sbjct: 2   LTTISPNAALLEETNVLKETAAKEEVEEPAPPAVTPEEKAEKEESVEVETVAEPPHSEAA 61

Query: 72  APKERNEPETEEE--EEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV 131
              E+ EP  EEE  EEEEEEV+ILTD+ EAEEE + V E VAKEE++ PDE+SA E + 
Sbjct: 62  VSNEKVEPTEEEEEVEEEEEEVMILTDESEAEEEPEAVAE-VAKEESDSPDESSAPEADA 121

Query: 132 -----------EKENPTKKT 139
                      +KE P +KT
Sbjct: 122 PAAEEAKEEDEKKEAPAEKT 140

[Close]

BLAST of ClCG02G002560.2 vs. NCBI nr
Match: KAG6572249.1 (hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 9.7e-12
Identity = 71/138 (51.45%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAKLSDLEVV 71
           ++T+SPNAAL+E+T VLKET  KE VE+  PPA T EEK ++EE  +VE VA+    E  
Sbjct: 4   VETISPNAALLEETNVLKETAAKEGVEEPAPPAVTPEEKAEKEESVEVETVAEPPHSEAT 63

Query: 72  APKERNEPETEEE--EEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV 131
              E+ E   EEE  EEEEEEVVILTD+ +AEEE + V E V KEE++ PDE+SA E + 
Sbjct: 64  VLNEKVEATEEEEEVEEEEEEVVILTDESKAEEEPEAVAE-VTKEESDSPDESSAPEADA 123

Query: 132 --------EKENPTKKTE 140
                   +KE P +KTE
Sbjct: 124 PATEEEDEKKEAPAEKTE 140

[Close]

BLAST of ClCG02G002560.2 vs. NCBI nr
Match: XP_011658674.1 (nucleoplasmin-like protein ANO39 [Cucumis sativus] >KGN43445.1 hypothetical protein Csa_020373 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-11
Identity = 77/139 (55.40%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKV-EVVAKLS--D 71
           ++ VSPNA L+EDTT +KET TKEEVE+   P  TS+E V+E EE  KV EVV + S  D
Sbjct: 4   VEIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 63

Query: 72  LEVVAPKERNEPETEEEEEEEEEVVILTDDEEAEE-EYKEVEEVVAKEENNKPDETS--- 131
            E V P E+ E  T EEEEEE+EVVILTDD+E EE EY E    VAKEEN+KPDE+S   
Sbjct: 64  SEAVVPNEKVE-ATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVP 123

Query: 132 ---ALEVEVEKENPTKKTE 140
              A+  E  +E   KK E
Sbjct: 124 EAKAVVSEEAEEEDEKKDE 141

[Close]

BLAST of ClCG02G002560.2 vs. NCBI nr
Match: XP_022968885.1 (glutamic acid-rich protein-like [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 72/140 (51.43%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 13  QTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAK--LSDLEV 72
           +T+SPNAAL+E+T VLKET  KEEVE+   PA T EEK ++EE  +VE VA+   S   V
Sbjct: 9   KTISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68

Query: 73  VAPKERNEPETEEEEEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV- 132
           +  K     E EE EEEEEEVVILTD+ EAEEE + V E VAKEE++ P+E+SA E +  
Sbjct: 69  LNEKVEATEEEEEVEEEEEEVVILTDESEAEEEPEAVAE-VAKEESDSPNESSAPEADTP 128

Query: 133 ----------EKENPTKKTE 140
                     +KE P +KTE
Sbjct: 129 AAKEAKEEDEKKEAPAEKTE 147

[Close]

BLAST of ClCG02G002560.2 vs. NCBI nr
Match: KAA0059152.1 (glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK02536.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKVEVVAKLSD--- 71
           ++TVSPNA L+EDTT++KET  KEEVE+   P  TS+EKV+E EE  KVEVV + S    
Sbjct: 4   VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSSDDY 63

Query: 72  LEVVAPKERNE---PETEEEEEEEEEVVILTDDEEAEE--EYKEVEEVVAKEENNKPDET 131
            E V   E+ E    + EEEEEEE+EVVILTDD+E EE  E KE  E VAKEEN+KPDE 
Sbjct: 64  SEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAE-VAKEENDKPDEP 123

Query: 132 S------ALEVEVEKENPTKK 138
           S      AL  E  +E   KK
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK 143

[Close]

BLAST of ClCG02G002560.2 vs. ExPASy TrEMBL
Match: A0A0A0K197 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037490 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 77/139 (55.40%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKV-EVVAKLS--D 71
           ++ VSPNA L+EDTT +KET TKEEVE+   P  TS+E V+E EE  KV EVV + S  D
Sbjct: 4   VEIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 63

Query: 72  LEVVAPKERNEPETEEEEEEEEEVVILTDDEEAEE-EYKEVEEVVAKEENNKPDETS--- 131
            E V P E+ E  T EEEEEE+EVVILTDD+E EE EY E    VAKEEN+KPDE+S   
Sbjct: 64  SEAVVPNEKVE-ATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVP 123

Query: 132 ---ALEVEVEKENPTKKTE 140
              A+  E  +E   KK E
Sbjct: 124 EAKAVVSEEAEEEDEKKDE 141

[Close]

BLAST of ClCG02G002560.2 vs. ExPASy TrEMBL
Match: A0A6J1HYF7 (glutamic acid-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468066 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.2e-11
Identity = 72/140 (51.43%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 13  QTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAK--LSDLEV 72
           +T+SPNAAL+E+T VLKET  KEEVE+   PA T EEK ++EE  +VE VA+   S   V
Sbjct: 9   KTISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68

Query: 73  VAPKERNEPETEEEEEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV- 132
           +  K     E EE EEEEEEVVILTD+ EAEEE + V E VAKEE++ P+E+SA E +  
Sbjct: 69  LNEKVEATEEEEEVEEEEEEVVILTDESEAEEEPEAVAE-VAKEESDSPNESSAPEADTP 128

Query: 133 ----------EKENPTKKTE 140
                     +KE P +KTE
Sbjct: 129 AAKEAKEEDEKKEAPAEKTE 147

[Close]

BLAST of ClCG02G002560.2 vs. ExPASy TrEMBL
Match: A0A5A7UTC3 (Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00150 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKVEVVAKLSD--- 71
           ++TVSPNA L+EDTT++KET  KEEVE+   P  TS+EKV+E EE  KVEVV + S    
Sbjct: 4   VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSSDDY 63

Query: 72  LEVVAPKERNE---PETEEEEEEEEEVVILTDDEEAEE--EYKEVEEVVAKEENNKPDET 131
            E V   E+ E    + EEEEEEE+EVVILTDD+E EE  E KE  E VAKEEN+KPDE 
Sbjct: 64  SEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAE-VAKEENDKPDEP 123

Query: 132 S------ALEVEVEKENPTKK 138
           S      AL  E  +E   KK
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK 143

[Close]

BLAST of ClCG02G002560.2 vs. ExPASy TrEMBL
Match: A0A1S3C185 (glutamic acid-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103495666 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 12  LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKVEVVAKLSD--- 71
           ++TVSPNA L+EDTT++KET  KEEVE+   P  TS+EKV+E EE  KVEVV + S    
Sbjct: 4   VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSSDDY 63

Query: 72  LEVVAPKERNE---PETEEEEEEEEEVVILTDDEEAEEEYKEVEEV--VAKEENNKPDET 131
            E V   E+ E    + EEEEEEE+EVVILTDD+E  EEY E +E   VAKEEN+KPDE 
Sbjct: 64  SEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEV-EEYLESKEAAGVAKEENDKPDEP 123

Query: 132 S------ALEVEVEKENPTKK 138
           S      AL  E  +E   KK
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK 143

The following BLAST results are available for this feature:

BLAST of ClCG02G002560.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511645.1	1.8e-13	52.86	glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]	[more]
KAG6572249.1	9.7e-12	51.45	hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011658674.1	6.3e-11	55.40	nucleoplasmin-like protein ANO39 [Cucumis sativus] >KGN43445.1 hypothetical prot...	[more]
XP_022968885.1	1.1e-10	51.43	glutamic acid-rich protein-like [Cucurbita maxima]	[more]
KAA0059152.1	2.4e-10	54.61	glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK02536.1 glutamic ...	[more]

BLAST of ClCG02G002560.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G002560.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K197	3.1e-11	55.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037490 PE=4 SV=1	[more]
A0A6J1HYF7	5.2e-11	51.43	glutamic acid-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468066 PE=4...	[more]
A0A5A7UTC3	1.2e-10	54.61	Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C185	1.2e-10	53.90	glutamic acid-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103495666 PE=4 SV=...	[more]

BLAST of ClCG02G002560.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G002560	ClCG02G002560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G002560.2-exon	ClCG02G002560.2-exon-CG_Chr02:2607973..2608392	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G002560.2-cds	ClCG02G002560.2-cds-CG_Chr02:2607973..2608392	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G002560.2	ClCG02G002560.2-protein	polypeptide