Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATCACTTTGAGAAAATACTATGATAACTTGCAGACTGTATCTCCGAATGCTGCTCTTGTAGAAGACACAACGGTTCTTAAAGAGACAACCACAAAAGAAGAAGTTGAGAAGCTACCGCCACCAGCCGATACATCAGAAGAGAAGGTGAAGGAAGAAGAGGGTGATAAAGTTGAAGTTGTTGCAAAATTATCTGATTTAGAAGTAGTTGCTCCAAAAGAAAGAAATGAACCAGAGACCGAAGAGGAAGAGGAGGAAGAAGAGGAGGTTGTAATCCTGACGGATGATGAAGAGGCTGAAGAAGAATATAAAGAAGTTGAAGAGGTGGTAGCGAAGGAAGAAAACAACAAGCCCGACGAGACATCGGCCCTAGAAGTCGAAGTTGAAAAAGAAAACCCAACAAAAAAGACAGAGTAA
mRNA sequence
ATGATCATCACTTTGAGAAAATACTATGATAACTTGCAGACTGTATCTCCGAATGCTGCTCTTGTAGAAGACACAACGGTTCTTAAAGAGACAACCACAAAAGAAGAAGTTGAGAAGCTACCGCCACCAGCCGATACATCAGAAGAGAAGGTGAAGGAAGAAGAGGGTGATAAAGTTGAAGTTGTTGCAAAATTATCTGATTTAGAAGTAGTTGCTCCAAAAGAAAGAAATGAACCAGAGACCGAAGAGGAAGAGGAGGAAGAAGAGGAGGTTGTAATCCTGACGGATGATGAAGAGGCTGAAGAAGAATATAAAGAAGTTGAAGAGGTGGTAGCGAAGGAAGAAAACAACAAGCCCGACGAGACATCGGCCCTAGAAGTCGAAGTTGAAAAAGAAAACCCAACAAAAAAGACAGAGTAA
Coding sequence (CDS)
ATGATCATCACTTTGAGAAAATACTATGATAACTTGCAGACTGTATCTCCGAATGCTGCTCTTGTAGAAGACACAACGGTTCTTAAAGAGACAACCACAAAAGAAGAAGTTGAGAAGCTACCGCCACCAGCCGATACATCAGAAGAGAAGGTGAAGGAAGAAGAGGGTGATAAAGTTGAAGTTGTTGCAAAATTATCTGATTTAGAAGTAGTTGCTCCAAAAGAAAGAAATGAACCAGAGACCGAAGAGGAAGAGGAGGAAGAAGAGGAGGTTGTAATCCTGACGGATGATGAAGAGGCTGAAGAAGAATATAAAGAAGTTGAAGAGGTGGTAGCGAAGGAAGAAAACAACAAGCCCGACGAGACATCGGCCCTAGAAGTCGAAGTTGAAAAAGAAAACCCAACAAAAAAGACAGAGTAA
Protein sequence
MIITLRKYYDNLQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAKLSDLEVVAPKERNEPETEEEEEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEVEKENPTKKTE
Homology
BLAST of ClCG02G002560 vs. NCBI nr
Match:
XP_023511645.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAKLSDLEVV 71
L T+SPNAAL+E+T VLKET KEEVE+ PPA T EEK ++EE +VE VA+ E
Sbjct: 2 LTTISPNAALLEETNVLKETAAKEEVEEPAPPAVTPEEKAEKEESVEVETVAEPPHSEAA 61
Query: 72 APKERNEPETEEE--EEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV 131
E+ EP EEE EEEEEEV+ILTD+ EAEEE + V E VAKEE++ PDE+SA E +
Sbjct: 62 VSNEKVEPTEEEEEVEEEEEEVMILTDESEAEEEPEAVAE-VAKEESDSPDESSAPEADA 121
Query: 132 -----------EKENPTKKT 139
+KE P +KT
Sbjct: 122 PAAEEAKEEDEKKEAPAEKT 140
BLAST of ClCG02G002560 vs. NCBI nr
Match:
KAG6572249.1 (hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 80.9 bits (198), Expect = 9.7e-12
Identity = 71/138 (51.45%), Postives = 91/138 (65.94%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAKLSDLEVV 71
++T+SPNAAL+E+T VLKET KE VE+ PPA T EEK ++EE +VE VA+ E
Sbjct: 4 VETISPNAALLEETNVLKETAAKEGVEEPAPPAVTPEEKAEKEESVEVETVAEPPHSEAT 63
Query: 72 APKERNEPETEEE--EEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV 131
E+ E EEE EEEEEEVVILTD+ +AEEE + V E V KEE++ PDE+SA E +
Sbjct: 64 VLNEKVEATEEEEEVEEEEEEVVILTDESKAEEEPEAVAE-VTKEESDSPDESSAPEADA 123
Query: 132 --------EKENPTKKTE 140
+KE P +KTE
Sbjct: 124 PATEEEDEKKEAPAEKTE 140
BLAST of ClCG02G002560 vs. NCBI nr
Match:
XP_011658674.1 (nucleoplasmin-like protein ANO39 [Cucumis sativus] >KGN43445.1 hypothetical protein Csa_020373 [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 6.3e-11
Identity = 77/139 (55.40%), Postives = 92/139 (66.19%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKV-EVVAKLS--D 71
++ VSPNA L+EDTT +KET TKEEVE+ P TS+E V+E EE KV EVV + S D
Sbjct: 4 VEIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 63
Query: 72 LEVVAPKERNEPETEEEEEEEEEVVILTDDEEAEE-EYKEVEEVVAKEENNKPDETS--- 131
E V P E+ E T EEEEEE+EVVILTDD+E EE EY E VAKEEN+KPDE+S
Sbjct: 64 SEAVVPNEKVE-ATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVP 123
Query: 132 ---ALEVEVEKENPTKKTE 140
A+ E +E KK E
Sbjct: 124 EAKAVVSEEAEEEDEKKDE 141
BLAST of ClCG02G002560 vs. NCBI nr
Match:
XP_022968885.1 (glutamic acid-rich protein-like [Cucurbita maxima])
HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 72/140 (51.43%), Postives = 91/140 (65.00%), Query Frame = 0
Query: 13 QTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAK--LSDLEV 72
+T+SPNAAL+E+T VLKET KEEVE+ PA T EEK ++EE +VE VA+ S V
Sbjct: 9 KTISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68
Query: 73 VAPKERNEPETEEEEEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV- 132
+ K E EE EEEEEEVVILTD+ EAEEE + V E VAKEE++ P+E+SA E +
Sbjct: 69 LNEKVEATEEEEEVEEEEEEVVILTDESEAEEEPEAVAE-VAKEESDSPNESSAPEADTP 128
Query: 133 ----------EKENPTKKTE 140
+KE P +KTE
Sbjct: 129 AAKEAKEEDEKKEAPAEKTE 147
BLAST of ClCG02G002560 vs. NCBI nr
Match:
KAA0059152.1 (glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK02536.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKVEVVAKLSD--- 71
++TVSPNA L+EDTT++KET KEEVE+ P TS+EKV+E EE KVEVV + S
Sbjct: 4 VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSSDDY 63
Query: 72 LEVVAPKERNE---PETEEEEEEEEEVVILTDDEEAEE--EYKEVEEVVAKEENNKPDET 131
E V E+ E + EEEEEEE+EVVILTDD+E EE E KE E VAKEEN+KPDE
Sbjct: 64 SEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAE-VAKEENDKPDEP 123
Query: 132 S------ALEVEVEKENPTKK 138
S AL E +E KK
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK 143
BLAST of ClCG02G002560 vs. ExPASy TrEMBL
Match:
A0A0A0K197 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037490 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 77/139 (55.40%), Postives = 92/139 (66.19%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKV-EVVAKLS--D 71
++ VSPNA L+EDTT +KET TKEEVE+ P TS+E V+E EE KV EVV + S D
Sbjct: 4 VEIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 63
Query: 72 LEVVAPKERNEPETEEEEEEEEEVVILTDDEEAEE-EYKEVEEVVAKEENNKPDETS--- 131
E V P E+ E T EEEEEE+EVVILTDD+E EE EY E VAKEEN+KPDE+S
Sbjct: 64 SEAVVPNEKVE-ATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVP 123
Query: 132 ---ALEVEVEKENPTKKTE 140
A+ E +E KK E
Sbjct: 124 EAKAVVSEEAEEEDEKKDE 141
BLAST of ClCG02G002560 vs. ExPASy TrEMBL
Match:
A0A6J1HYF7 (glutamic acid-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468066 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 5.2e-11
Identity = 72/140 (51.43%), Postives = 91/140 (65.00%), Query Frame = 0
Query: 13 QTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKEEEGDKVEVVAK--LSDLEV 72
+T+SPNAAL+E+T VLKET KEEVE+ PA T EEK ++EE +VE VA+ S V
Sbjct: 9 KTISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68
Query: 73 VAPKERNEPETEEEEEEEEEVVILTDDEEAEEEYKEVEEVVAKEENNKPDETSALEVEV- 132
+ K E EE EEEEEEVVILTD+ EAEEE + V E VAKEE++ P+E+SA E +
Sbjct: 69 LNEKVEATEEEEEVEEEEEEVVILTDESEAEEEPEAVAE-VAKEESDSPNESSAPEADTP 128
Query: 133 ----------EKENPTKKTE 140
+KE P +KTE
Sbjct: 129 AAKEAKEEDEKKEAPAEKTE 147
BLAST of ClCG02G002560 vs. ExPASy TrEMBL
Match:
A0A5A7UTC3 (Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00150 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKVEVVAKLSD--- 71
++TVSPNA L+EDTT++KET KEEVE+ P TS+EKV+E EE KVEVV + S
Sbjct: 4 VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSSDDY 63
Query: 72 LEVVAPKERNE---PETEEEEEEEEEVVILTDDEEAEE--EYKEVEEVVAKEENNKPDET 131
E V E+ E + EEEEEEE+EVVILTDD+E EE E KE E VAKEEN+KPDE
Sbjct: 64 SEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAE-VAKEENDKPDEP 123
Query: 132 S------ALEVEVEKENPTKK 138
S AL E +E KK
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK 143
BLAST of ClCG02G002560 vs. ExPASy TrEMBL
Match:
A0A1S3C185 (glutamic acid-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103495666 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 0
Query: 12 LQTVSPNAALVEDTTVLKETTTKEEVEKLPPPADTSEEKVKE-EEGDKVEVVAKLSD--- 71
++TVSPNA L+EDTT++KET KEEVE+ P TS+EKV+E EE KVEVV + S
Sbjct: 4 VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSSDDY 63
Query: 72 LEVVAPKERNE---PETEEEEEEEEEVVILTDDEEAEEEYKEVEEV--VAKEENNKPDET 131
E V E+ E + EEEEEEE+EVVILTDD+E EEY E +E VAKEEN+KPDE
Sbjct: 64 SEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEV-EEYLESKEAAGVAKEENDKPDEP 123
Query: 132 S------ALEVEVEKENPTKK 138
S AL E +E KK
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK 143
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023511645.1 | 1.8e-13 | 52.86 | glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6572249.1 | 9.7e-12 | 51.45 | hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_011658674.1 | 6.3e-11 | 55.40 | nucleoplasmin-like protein ANO39 [Cucumis sativus] >KGN43445.1 hypothetical prot... | [more] |
XP_022968885.1 | 1.1e-10 | 51.43 | glutamic acid-rich protein-like [Cucurbita maxima] | [more] |
KAA0059152.1 | 2.4e-10 | 54.61 | glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK02536.1 glutamic ... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K197 | 3.1e-11 | 55.40 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037490 PE=4 SV=1 | [more] |
A0A6J1HYF7 | 5.2e-11 | 51.43 | glutamic acid-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468066 PE=4... | [more] |
A0A5A7UTC3 | 1.2e-10 | 54.61 | Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A1S3C185 | 1.2e-10 | 53.90 | glutamic acid-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103495666 PE=4 SV=... | [more] |
Match Name | E-value | Identity | Description | |