ClCG02G001220.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G001220.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr02: 1380613 .. 1384393 (-)
Sequence length	462
RNA-Seq Expression	ClCG02G001220.2
Synteny	ClCG02G001220.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGTGGTAACATGGTTGTTTTGACTCTAGAAACAGGAACCACTGAAAAAAATTAGTATTTCTCGTTGGTTTTGAGATTCCCACTTCCTATGGGGATCTGCAATTCAAATGGTCCTCCAACTTGGCATCTTTCTTTTATTGTTTTTGGGAAAAGTGAAATCTTTTTCCTTTCATCTTCTTTTTTTCATTGTTTGTATTGAATATGCATGGGGTACAGGTTATGTCTTCTCTGGTGGGGCTAACACTGGAACGTTTCTCTTTTTCTTTTCGCTATGTGTTGCATTGTGGACTGTGCTGTCCCAAGCACTCCAGACAAAGGGGTCAACAAAAGTAGCACAGAGTCCAAGGAGAATATCCACGAAGATTTCTGTTAATATTGTAAGTCATCATCTCTATTCATCTGCTGGTAATTCCATATAAGGAAGTAAAAATGAAAGAGCCCACAAAAAACTAGTATAAGTCTTTTGCAAATGCCGATAACAATGGCCATTATGTAAGATGATGCAGTATTGAGAACTTTAAATGGTCATCTTCTTCGGTTACTTTTTTTCTTTAATTTGGGTTTTCGATGCTGACGTTTTTCTTCTTTTCATGGTTGGTGGTAGAATTATGTGGTTAATTAACTATATGTTGTAACTTTGATGTCAGTGAAAGAGGCATGGGATTCATTATGAACATAACAATCAGGGTACTAATCATGGATTACAGGAGCTGACCCAGCTTGCAACAATCATTCATTTTCATCCTCTCTTTAATTTGGTGGGGGCAAGAGAAGGCCCAAATCAACATCATCAAATATAACCTAAAGGGCCTCTCTACATATTGAAGTTAGAGACTGATGTTGATGTGACTTTCACCATGTTTTCCAACTTTAGAATGTCAAGTTGCAAGTCAGAATAAGCTGAAATTCCAAGAGTGGGTGACCCTTGTTCTATAGTGATGTTATTTTTCAGGTCAACTGATGTTGGAGCTTGATGTTAAGCTTGATGGTGGACAGATGCTCAAGCTATGTTGATGCAGAGGCTTCAAAATGGGTTCTGGAGGACAAGGTGCAGGAGCAGGGTGAGCAATGTAGGTTGGAATTTCTTCACCCGGCATCAATACGGACACTCCCCGAGCATAAACCGTCATCTACATAAATCAAGTAAAAAAGAATGAACCAGTCAATCCCAATGGTACAGAATAAAACTAAACTTTGCTTCTCAGCTACTCCTCTAATTATCAGTAGAAATATATTTCATTACAGGAATCATCTAGCTACTAATATCATGGTGTTCTGGGAATGCTGCAAGATTTCAGCAGCAATGGTGCAAAAGGTCATCGTCCAAGAATGATTAAGCATGTTTGACAGACGCAATAAAGAAGGGTTTTTTTTTTTTTTTTTTTTCCCTTTTGCATGAGAGTTCTGTAGCATGTAGTTCATCAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGATTTGACTTGAACACTGTACAGCCACTGTTGATTGAACAGTATAGAATTATAAATTTGATTAAAAGATAGATGAATCAAAACCTCACTCCAATAGAACATTAATGCTTGTCCGAACCTTTTTTCCCTTTTTCTTTTGCCTTTCTTTCCCCTTATGAAGAGAAAGATAAGCCACATGATCAAACATGATGGTNGACAGACGCAATAAAGAAGGGGTTTTTTTTTTTTTTTTTTTCCCTTTTGCATGAGAGTTCTGTAGCATGTAGTTCATCAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGATTTGACTTGAACACTGTACAGCCACTGTTGATTGAACAGTATAGAATTATAAATTTGATTAAAAGATAGATGAATCAAAACCTCACTCCAATAGAACATTAATGCTTGTCCGAACCTTTTTTCCCTTTTTCTTTTGCCTTTCTTTCCCCTTATGAAGAGAAAGATAAGCCACATGATCAAACATGATGGTCACTAAAAGCAAATGTCCTCAAACAAGAAGGAAAACTCATAATAATGATCACCATTCTAATTTTCAGTTGAAAATAGCTGGCCTATAAGCAAAAAGGAAGACAACTTTATCATACTTGAGATGCAAGAATAGGACACAAACTAGTGGAAGTAGATTCTGAATAATCCAGGACCTCCTATTTCAATACCCTTCTACTCTGCTAGTATTTTTCCCAACAAAATAAAATTGAAAGTATTACTCAAATCTCAACCAAACTCAGCTGTACATGTTGGTATGGTACAAGTATACCTCATAGAATGTAGGAAAGATATTGAAAATAGTGCCAGCTGAGACTTTAAGACACTTTATAAAGCTAAAAGAAATACTTAAAAATATGGGCACATTACTATAGTGTAATCAGAAAGGGAAACATAGCATGTGATTATGTTTGTAATTAACTTGCTACTGCACTTAAAAGGCTTATGAACAGTTGTGCTATATCTTGCTTGATATGAACAATGCATTTAATGGTGTAGGATCAAATTGTTGACAAAGTTTGTTACATTGAGATAACTTTGAATAATCTGTTCTTTTTAAAATGTCATCTGGCACAGCTTCACAAGCGACTAATGCTATAAAAAATTAAGAGCAGCTTGTTCATTTTAAAGCCTTTTGGATGTGTTTTGCCTATCAAATTTGATTGTGGTTGGATTGCTATAACAGTTGAGACAAAAACACATGCTACCTACATGCTGTGGACCCTTATCCTTAAAATCTAGAATGAGGAAAACTATTGTATTAATATTAACAAACAGAGGTAATATAGAAATTTTTAGAAGAGAACTGTTTGAAAATAGTTTAAACATTATTAATTGTCAACAAAAGAATTTATTATTATTATTTAAAAAAAAAAGTGATCCTTTTAAGGATGGTTTTCGAGAAAGAAAAAAAAAAAAACTACGGACAATACTTGAGTACATCGCAAATGTATCCATTTTACGCATCCCATGAGAAATAATTAAGTGCTGCCTAGACTCTTTTTGTTGTGTGCAAAGAAAAGTGGAGTGTGGATTAGATGGAATTTAATTGCTCTTAAAATAAAAATAAGAATAATTTGTCATGTGGCAAATTATGATTGGACTTAGTGGAATGCACGAAAATAGGTATTATTGGAGATGCACCTAAATATTTTCCAAAAACTATTCTCTTGATCTTATAACCTAGTTTCTAAAGTAAAGCAGAAGCCATTTAAATTAGAATCTCGAGATTAGTAACCCCATCAGATTATAACTCCAAGGCCCCACAACAAACTTCCATAACAAACAGATATTATACAACACCTACAACTCTAAAGCTTAAGAAAAATGGCATGGGATTCATTTATTCAAAAGATCATACACAAAATAGACTTGCAATGTTGTAAAATGGTGGAGAATATGATTTCCAGTGTCTTAAAAGTTCAAAAGAGTTTCATGCTTAGATGTAAAAATACAACAAAACAGCTCATAATTAGTTAGACCAATAATTCAGCCCACTAGAAGAACTAACTGCCAACAAGCTATGCCATTATTCTTGAAGATAATGAAATCATTTACACAAACAAATTATCTTCACAACTTACCCATCAAGCCTTTAATCAACTAAAAGAAAACTCAAAACAAAACACTAAAAAAACACAAGAATCAAAATTTTGAAGAGCAAACAAAATGCAGGCCACCATTAGAATGCAGTTGAAGAAAAGAAGAGAAGACAAAAACCTTAGGATAAGGGTAACGAGGCTTTCCATCAAACACCATCTGAGCTTCAAGATCAGAAGGCGGCCGTCCGATGGCCGGCGGCGACCTGGGTCTTAG

mRNA sequence

ATGGTAAGTTATGTCTTCTCTGGTGGGGCTAACACTGGAACGTTTCTCTTTTTCTTTTCGCTATGTGTTGCATTGTGGACTGTGCTGTCCCAAGCACTCCAGACAAAGGGGTCAACAAAAGTAGCACAGAGTCCAAGGAGAATATCCACGAAGATTTCTGTTAATATTGTAAGTCATCATCTCTATTCATCTGCTGAGGCTTCAAAATGGGTTCTGGAGGACAAGGTGCAGGAGCAGGGTGAGCAATGTAGGAATCATCTAGCTACTAATATCATGGTGTTCTGGGAATGCTGCAAGATTTCAGCAGCAATGGTGCAAAAGGCCACCATTAGAATGCAGTTGAAGAAAAGAAGAGAAGACAAAAACCTTAGGATAAGGGTAACGAGGCTTTCCATCAAACACCATCTGAGCTTCAAGATCAGAAGGCGGCCGTCCGATGGCCGGCGGCGACCTGGGTCTTAG

Coding sequence (CDS)

ATGGTAAGTTATGTCTTCTCTGGTGGGGCTAACACTGGAACGTTTCTCTTTTTCTTTTCGCTATGTGTTGCATTGTGGACTGTGCTGTCCCAAGCACTCCAGACAAAGGGGTCAACAAAAGTAGCACAGAGTCCAAGGAGAATATCCACGAAGATTTCTGTTAATATTGTAAGTCATCATCTCTATTCATCTGCTGAGGCTTCAAAATGGGTTCTGGAGGACAAGGTGCAGGAGCAGGGTGAGCAATGTAGGAATCATCTAGCTACTAATATCATGGTGTTCTGGGAATGCTGCAAGATTTCAGCAGCAATGGTGCAAAAGGCCACCATTAGAATGCAGTTGAAGAAAAGAAGAGAAGACAAAAACCTTAGGATAAGGGTAACGAGGCTTTCCATCAAACACCATCTGAGCTTCAAGATCAGAAGGCGGCCGTCCGATGGCCGGCGGCGACCTGGGTCTTAG

Protein sequence

MVSYVFSGGANTGTFLFFFSLCVALWTVLSQALQTKGSTKVAQSPRRISTKISVNIVSHHLYSSAEASKWVLEDKVQEQGEQCRNHLATNIMVFWECCKISAAMVQKATIRMQLKKRREDKNLRIRVTRLSIKHHLSFKIRRRPSDGRRRPGS

Homology

[Close]

BLAST of ClCG02G001220.2 vs. ExPASy TrEMBL
Match: A0A0A0K5P2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047280 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.7e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 27 TVLSQALQTKGSTKVAQSPRRISTKISVNIVSHHLYSSA 66
          TVLSQALQTKGSTKVA+SPRRI TKIS NIVSHHLYS A
Sbjct: 47 TVLSQALQTKGSTKVARSPRRICTKISRNIVSHHLYSPA 85

The following BLAST results are available for this feature:

BLAST of ClCG02G001220.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG02G001220.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG02G001220.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5P2	7.7e-08	89.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047280 PE=4 SV=1	[more]

BLAST of ClCG02G001220.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G001220	ClCG02G001220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G001220.2-exon	ClCG02G001220.2-exon-CG_Chr02:1380613..1380753	exon
ClCG02G001220.2-exon	ClCG02G001220.2-exon-CG_Chr02:1383074..1383143	exon
ClCG02G001220.2-exon	ClCG02G001220.2-exon-CG_Chr02:1383315..1383369	exon
ClCG02G001220.2-exon	ClCG02G001220.2-exon-CG_Chr02:1383984..1384172	exon
ClCG02G001220.2-exon	ClCG02G001220.2-exon-CG_Chr02:1384387..1384393	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G001220.2-cds	ClCG02G001220.2-cds-CG_Chr02:1380613..1380753	CDS
ClCG02G001220.2-cds	ClCG02G001220.2-cds-CG_Chr02:1383074..1383143	CDS
ClCG02G001220.2-cds	ClCG02G001220.2-cds-CG_Chr02:1383315..1383369	CDS
ClCG02G001220.2-cds	ClCG02G001220.2-cds-CG_Chr02:1383984..1384172	CDS
ClCG02G001220.2-cds	ClCG02G001220.2-cds-CG_Chr02:1384387..1384393	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G001220.2	ClCG02G001220.2-protein	polypeptide