ClCG02G001220.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G001220.2
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 1380613 .. 1384393 (-)
Sequence length462
RNA-Seq ExpressionClCG02G001220.2
SyntenyClCG02G001220.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGTGGTAACATGGTTGTTTTGACTCTAGAAACAGGAACCACTGAAAAAAATTAGTATTTCTCGTTGGTTTTGAGATTCCCACTTCCTATGGGGATCTGCAATTCAAATGGTCCTCCAACTTGGCATCTTTCTTTTATTGTTTTTGGGAAAAGTGAAATCTTTTTCCTTTCATCTTCTTTTTTTCATTGTTTGTATTGAATATGCATGGGGTACAGGTTATGTCTTCTCTGGTGGGGCTAACACTGGAACGTTTCTCTTTTTCTTTTCGCTATGTGTTGCATTGTGGACTGTGCTGTCCCAAGCACTCCAGACAAAGGGGTCAACAAAAGTAGCACAGAGTCCAAGGAGAATATCCACGAAGATTTCTGTTAATATTGTAAGTCATCATCTCTATTCATCTGCTGGTAATTCCATATAAGGAAGTAAAAATGAAAGAGCCCACAAAAAACTAGTATAAGTCTTTTGCAAATGCCGATAACAATGGCCATTATGTAAGATGATGCAGTATTGAGAACTTTAAATGGTCATCTTCTTCGGTTACTTTTTTTCTTTAATTTGGGTTTTCGATGCTGACGTTTTTCTTCTTTTCATGGTTGGTGGTAGAATTATGTGGTTAATTAACTATATGTTGTAACTTTGATGTCAGTGAAAGAGGCATGGGATTCATTATGAACATAACAATCAGGGTACTAATCATGGATTACAGGAGCTGACCCAGCTTGCAACAATCATTCATTTTCATCCTCTCTTTAATTTGGTGGGGGCAAGAGAAGGCCCAAATCAACATCATCAAATATAACCTAAAGGGCCTCTCTACATATTGAAGTTAGAGACTGATGTTGATGTGACTTTCACCATGTTTTCCAACTTTAGAATGTCAAGTTGCAAGTCAGAATAAGCTGAAATTCCAAGAGTGGGTGACCCTTGTTCTATAGTGATGTTATTTTTCAGGTCAACTGATGTTGGAGCTTGATGTTAAGCTTGATGGTGGACAGATGCTCAAGCTATGTTGATGCAGAGGCTTCAAAATGGGTTCTGGAGGACAAGGTGCAGGAGCAGGGTGAGCAATGTAGGTTGGAATTTCTTCACCCGGCATCAATACGGACACTCCCCGAGCATAAACCGTCATCTACATAAATCAAGTAAAAAAGAATGAACCAGTCAATCCCAATGGTACAGAATAAAACTAAACTTTGCTTCTCAGCTACTCCTCTAATTATCAGTAGAAATATATTTCATTACAGGAATCATCTAGCTACTAATATCATGGTGTTCTGGGAATGCTGCAAGATTTCAGCAGCAATGGTGCAAAAGGTCATCGTCCAAGAATGATTAAGCATGTTTGACAGACGCAATAAAGAAGGGTTTTTTTTTTTTTTTTTTTTCCCTTTTGCATGAGAGTTCTGTAGCATGTAGTTCATCAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGATTTGACTTGAACACTGTACAGCCACTGTTGATTGAACAGTATAGAATTATAAATTTGATTAAAAGATAGATGAATCAAAACCTCACTCCAATAGAACATTAATGCTTGTCCGAACCTTTTTTCCCTTTTTCTTTTGCCTTTCTTTCCCCTTATGAAGAGAAAGATAAGCCACATGATCAAACATGATGGTNGACAGACGCAATAAAGAAGGGGTTTTTTTTTTTTTTTTTTTCCCTTTTGCATGAGAGTTCTGTAGCATGTAGTTCATCAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGATTTGACTTGAACACTGTACAGCCACTGTTGATTGAACAGTATAGAATTATAAATTTGATTAAAAGATAGATGAATCAAAACCTCACTCCAATAGAACATTAATGCTTGTCCGAACCTTTTTTCCCTTTTTCTTTTGCCTTTCTTTCCCCTTATGAAGAGAAAGATAAGCCACATGATCAAACATGATGGTCACTAAAAGCAAATGTCCTCAAACAAGAAGGAAAACTCATAATAATGATCACCATTCTAATTTTCAGTTGAAAATAGCTGGCCTATAAGCAAAAAGGAAGACAACTTTATCATACTTGAGATGCAAGAATAGGACACAAACTAGTGGAAGTAGATTCTGAATAATCCAGGACCTCCTATTTCAATACCCTTCTACTCTGCTAGTATTTTTCCCAACAAAATAAAATTGAAAGTATTACTCAAATCTCAACCAAACTCAGCTGTACATGTTGGTATGGTACAAGTATACCTCATAGAATGTAGGAAAGATATTGAAAATAGTGCCAGCTGAGACTTTAAGACACTTTATAAAGCTAAAAGAAATACTTAAAAATATGGGCACATTACTATAGTGTAATCAGAAAGGGAAACATAGCATGTGATTATGTTTGTAATTAACTTGCTACTGCACTTAAAAGGCTTATGAACAGTTGTGCTATATCTTGCTTGATATGAACAATGCATTTAATGGTGTAGGATCAAATTGTTGACAAAGTTTGTTACATTGAGATAACTTTGAATAATCTGTTCTTTTTAAAATGTCATCTGGCACAGCTTCACAAGCGACTAATGCTATAAAAAATTAAGAGCAGCTTGTTCATTTTAAAGCCTTTTGGATGTGTTTTGCCTATCAAATTTGATTGTGGTTGGATTGCTATAACAGTTGAGACAAAAACACATGCTACCTACATGCTGTGGACCCTTATCCTTAAAATCTAGAATGAGGAAAACTATTGTATTAATATTAACAAACAGAGGTAATATAGAAATTTTTAGAAGAGAACTGTTTGAAAATAGTTTAAACATTATTAATTGTCAACAAAAGAATTTATTATTATTATTTAAAAAAAAAAGTGATCCTTTTAAGGATGGTTTTCGAGAAAGAAAAAAAAAAAAACTACGGACAATACTTGAGTACATCGCAAATGTATCCATTTTACGCATCCCATGAGAAATAATTAAGTGCTGCCTAGACTCTTTTTGTTGTGTGCAAAGAAAAGTGGAGTGTGGATTAGATGGAATTTAATTGCTCTTAAAATAAAAATAAGAATAATTTGTCATGTGGCAAATTATGATTGGACTTAGTGGAATGCACGAAAATAGGTATTATTGGAGATGCACCTAAATATTTTCCAAAAACTATTCTCTTGATCTTATAACCTAGTTTCTAAAGTAAAGCAGAAGCCATTTAAATTAGAATCTCGAGATTAGTAACCCCATCAGATTATAACTCCAAGGCCCCACAACAAACTTCCATAACAAACAGATATTATACAACACCTACAACTCTAAAGCTTAAGAAAAATGGCATGGGATTCATTTATTCAAAAGATCATACACAAAATAGACTTGCAATGTTGTAAAATGGTGGAGAATATGATTTCCAGTGTCTTAAAAGTTCAAAAGAGTTTCATGCTTAGATGTAAAAATACAACAAAACAGCTCATAATTAGTTAGACCAATAATTCAGCCCACTAGAAGAACTAACTGCCAACAAGCTATGCCATTATTCTTGAAGATAATGAAATCATTTACACAAACAAATTATCTTCACAACTTACCCATCAAGCCTTTAATCAACTAAAAGAAAACTCAAAACAAAACACTAAAAAAACACAAGAATCAAAATTTTGAAGAGCAAACAAAATGCAGGCCACCATTAGAATGCAGTTGAAGAAAAGAAGAGAAGACAAAAACCTTAGGATAAGGGTAACGAGGCTTTCCATCAAACACCATCTGAGCTTCAAGATCAGAAGGCGGCCGTCCGATGGCCGGCGGCGACCTGGGTCTTAG

mRNA sequence

ATGGTAAGTTATGTCTTCTCTGGTGGGGCTAACACTGGAACGTTTCTCTTTTTCTTTTCGCTATGTGTTGCATTGTGGACTGTGCTGTCCCAAGCACTCCAGACAAAGGGGTCAACAAAAGTAGCACAGAGTCCAAGGAGAATATCCACGAAGATTTCTGTTAATATTGTAAGTCATCATCTCTATTCATCTGCTGAGGCTTCAAAATGGGTTCTGGAGGACAAGGTGCAGGAGCAGGGTGAGCAATGTAGGAATCATCTAGCTACTAATATCATGGTGTTCTGGGAATGCTGCAAGATTTCAGCAGCAATGGTGCAAAAGGCCACCATTAGAATGCAGTTGAAGAAAAGAAGAGAAGACAAAAACCTTAGGATAAGGGTAACGAGGCTTTCCATCAAACACCATCTGAGCTTCAAGATCAGAAGGCGGCCGTCCGATGGCCGGCGGCGACCTGGGTCTTAG

Coding sequence (CDS)

ATGGTAAGTTATGTCTTCTCTGGTGGGGCTAACACTGGAACGTTTCTCTTTTTCTTTTCGCTATGTGTTGCATTGTGGACTGTGCTGTCCCAAGCACTCCAGACAAAGGGGTCAACAAAAGTAGCACAGAGTCCAAGGAGAATATCCACGAAGATTTCTGTTAATATTGTAAGTCATCATCTCTATTCATCTGCTGAGGCTTCAAAATGGGTTCTGGAGGACAAGGTGCAGGAGCAGGGTGAGCAATGTAGGAATCATCTAGCTACTAATATCATGGTGTTCTGGGAATGCTGCAAGATTTCAGCAGCAATGGTGCAAAAGGCCACCATTAGAATGCAGTTGAAGAAAAGAAGAGAAGACAAAAACCTTAGGATAAGGGTAACGAGGCTTTCCATCAAACACCATCTGAGCTTCAAGATCAGAAGGCGGCCGTCCGATGGCCGGCGGCGACCTGGGTCTTAG

Protein sequence

MVSYVFSGGANTGTFLFFFSLCVALWTVLSQALQTKGSTKVAQSPRRISTKISVNIVSHHLYSSAEASKWVLEDKVQEQGEQCRNHLATNIMVFWECCKISAAMVQKATIRMQLKKRREDKNLRIRVTRLSIKHHLSFKIRRRPSDGRRRPGS
Homology
[Close]
BLAST of ClCG02G001220.2 vs. ExPASy TrEMBL
Match: A0A0A0K5P2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047280 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.7e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 27 TVLSQALQTKGSTKVAQSPRRISTKISVNIVSHHLYSSA 66
          TVLSQALQTKGSTKVA+SPRRI TKIS NIVSHHLYS A
Sbjct: 47 TVLSQALQTKGSTKVARSPRRICTKISRNIVSHHLYSPA 85

The following BLAST results are available for this feature:
BLAST of ClCG02G001220.2 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG02G001220.2 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG02G001220.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5P27.7e-0889.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047280 PE=4 SV=1[more]
BLAST of ClCG02G001220.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG02G001220ClCG02G001220gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG02G001220.2-exonClCG02G001220.2-exon-CG_Chr02:1380613..1380753exon
ClCG02G001220.2-exonClCG02G001220.2-exon-CG_Chr02:1383074..1383143exon
ClCG02G001220.2-exonClCG02G001220.2-exon-CG_Chr02:1383315..1383369exon
ClCG02G001220.2-exonClCG02G001220.2-exon-CG_Chr02:1383984..1384172exon
ClCG02G001220.2-exonClCG02G001220.2-exon-CG_Chr02:1384387..1384393exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG02G001220.2-cdsClCG02G001220.2-cds-CG_Chr02:1380613..1380753CDS
ClCG02G001220.2-cdsClCG02G001220.2-cds-CG_Chr02:1383074..1383143CDS
ClCG02G001220.2-cdsClCG02G001220.2-cds-CG_Chr02:1383315..1383369CDS
ClCG02G001220.2-cdsClCG02G001220.2-cds-CG_Chr02:1383984..1384172CDS
ClCG02G001220.2-cdsClCG02G001220.2-cds-CG_Chr02:1384387..1384393CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG02G001220.2ClCG02G001220.2-proteinpolypeptide