ClCG01G013075.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G013075.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Photosystem II protein D1
Location	CG_Chr01: 26186696 .. 26189838 (+)
Sequence length	225
RNA-Seq Expression	ClCG01G013075.1
Synteny	ClCG01G013075.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACGTCGTTTTATCCTGCCCGCGTTTTCCTCTCACCGACCACTTTTCTACTTCTTCCTCTCTCCTTTTTCTTTTTGTCTTTTTTTTTTTTTTTATCCGATTATCCAATCCCGACTTTAGTTTTTTTTTTTTTTCTTCCTATTTTTAAATTGCTTATTTTATTCTTTCTTACTCTTGATTTTAGTTCCTTTTAGTATATATACTTTTAAAAAGTGACCGTTTTGGATCATTTCACTCTATTTTTGTTTAAACTTTAAGGAGACGTTTGAGGCTAAGTTGGTTATTATAGTTTATGGGGTATAATAATCAATATGTTTGAGATGTAGACTATTTTAGTATAGGTAAGAAATGATAAACACAGTAATAAATTAAAAAAAAAGAGAGAGAGAATGAGTGAAAAATAGTAAATAAATAGAAAAGAAGGGTTTTGAAATAGTATTTATTATACTTAATTGTAGGTTACAAAATAGTTGTTAAAATGAACCAAAATCGAAATTATACAATGACCAAAATGAACCAAAAATAAAGTACAATAACCTTAATGTACCAATATTGGAAAGCATAAATACCAAAAATAACATTTTGAAAGTCTTAAAACTAAAATGAATCAAAGTCGAAATTACAACAATCAAAATAGAAATTCTAAAAGTATATGAACCAAAATTAAAGTAAAATCACCGAAATGAACATTTTGAAAGAACAAGAATCAAAATGAACCAAAAGTAGAATGTACGTGCATTTGTCCTGCGGATAATCCTCGATTAGAGGGAGGGAGCAAGGAGAATTTTCTCCCCTTTGGCTAAATGGGGATGGGGACGGGGATTATATTCCCCATCCCCGACTCCAAACATGCCCGCCCCACCTTATTTAATTTTTTAAATATATATTTATTTATTTATTTAAAAAGAATTAAAAACTTCATACCATTCATCTTTTTCTTCTGAGTGTGTTAAAATTAAAAAAACTTAAAATATTAAACTCAATTTACCTGCTCTTTGTGAATTTAAAAACGTTCGATTTAGTTCTCTTTTTTGTTTAGGTTTAGTTTGATTTTTGGTATATCTTAGGTTTGAGATTAGGTAGTTTGATTTTTATAATTTTATAAATCTTAATTTATGCGATTTTGAAAGGTCTCTACATGATTGGAGAATTTCAATTTAATTTATAATATAGTTCAGTCAAATTTCATAAATAGTTTTTAAAGCTACTATATTCACGCGTTGTGTTTTTAACTTAGACAGAAATTGGATTTCTTAAATTAGATAATTGTCTCAATTTGTTGTGTTAAATATTTGAGGTTCAAATTACAAATTGGGATTATTTTTAAAAACTAATGTTATTTTAATATTTATTGATAAAAATGGAGTTAAGGGGAAACTATTGACAATTTTGGGATAGTAAAATTGTGGATGGGATCCACAAGTATGGATAATCAAGGACTGGGTCCACGATTTAGGGCATTATTGTGGATTAGGTCCACAATTTAGGGCATTATTGTGGATTAGGTCCACAATTAAGATGCCACGCGATTGCCGAAGTAGGAATTTCTCTACTAACTTCCCGAACCAGATGACGAGACTGCCACATGTTGAGTTGACTAGCAAATTGTGGACGGAGTCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTCCCTCTCCCAGCCAATCGCCGCCCACCGTCTACTGAACGCCGTCATCTTCTCCCTGTCATCCACCTATGGCATATGTATATACATTTTTTCCAATCATATGATAAATATCTATAGATCTAATGTTTTATTTTGTATGGATGAATGGGCTTGTAGTTCTAGAGTTTGTTTTTACCAAACAATTTGTTTTGTTTAAAATTTGGAGGATCTAGCTTGTTTTTTTACCATTAGTTTGAGTTTGAGTTTTTTTATCGTTAGTTTGGACTTCAAATTTTATTTTTGAATTGTTTGAGTGTTTGGACTTGAAAGTTTTTATTGTTGTTTGGACTGATGATGGATTGGGTTGTAGGGTTTTTTTTTTTTTTTTTGAAAATTTGGACTCATCTCTAAAACGTAGTAACTTAGACTAATGTTTTTGGACTAATAGATTTAACATTGTAGCATCACAAGTCCAATTACAACCTTTAGATCACATTATGGGATATCCACTCAATGTCAGGTATTACTTTTTGTATATATTCATTCTCTTGTCAATTTAAGTAATAAAATATTTTAATTGTTTTATATTCATGTGTTAGATGAAGCGGTGGCTTAGCTATATCTCAACAATCAGCAAACATGTTGCTGGTATATCGACTATTATTTGATCAATTGATGCAGAATTAGGTAATAATATATTTATTGCATATACAAATGAATATTACATATTATTTTGGTTCCTAATATTAGTGTATGAGATTTCAGATCAATTGGGCGACATACACACCACATATTATGTCGTTATTGTCTGATTATTGTTAGCCCACTTATATGCTTTTATATCGTAGAGTGGCATCAGCTACATCGGGTGTTGAGACAGTTTGATCTTCGACAAACGGTACCAACGTTGTGTTGTACACTCCTGCAACTACACCAGATTTATTTAAGAGGTAAACATGTCCAAAACTAGCGTCAAATTCATGCAAAATATATGTCCTTGTGGCATGCCCGTCATGATCGTTGTCATAAAGAGAAACTTCTAGTTTATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

mRNA sequence

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Coding sequence (CDS)

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Protein sequence

MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL

Homology

[Close]

BLAST of ClCG01G013075.1 vs. NCBI nr
Match: VDD65979.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAAHGYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]

BLAST of ClCG01G013075.1 vs. NCBI nr
Match: KAG5122340.1 (hypothetical protein JHK84_040680 [Glycine max])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELL 65
           FGQEEET +IVAAHGYFGRLIFQYA+ S + I+ +SS  L
Sbjct: 71  FGQEEETYNIVAAHGYFGRLIFQYASSSHSHIIPLSSSNL 110

[Close]

BLAST of ClCG01G013075.1 vs. NCBI nr
Match: ADG03116.1 (photosystem II protein D1, partial [uncultured eukaryote])

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+
Sbjct: 146 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALH 179

[Close]

BLAST of ClCG01G013075.1 vs. NCBI nr
Match: QGR10201.1 (photosystem II D1 protein, partial [Hapalidiales sp. YA_Twist-2019])

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG 72
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+     LGL  V G
Sbjct: 213 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALHF---FLGLWPVVG 256

[Close]

BLAST of ClCG01G013075.1 vs. NCBI nr
Match: ACF23897.1 (photosystem II protein D1, partial [uncultured bacterium])

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + + IL+
Sbjct: 146 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRILH 179

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy Swiss-Prot
Match: A5A8K9 (Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=psbA2 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ S +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFSNSRSLH 272

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy Swiss-Prot
Match: P07826 (Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psbA1 PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy Swiss-Prot
Match: B1XIP3 (Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=psbA3 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy Swiss-Prot
Match: Q8DIV4 (Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=psbA3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy Swiss-Prot
Match: P48265 (Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy TrEMBL
Match: A0A3P6HJ61 (Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAAHGYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy TrEMBL
Match: A0A287U321 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-05
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 25 FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL 67
          FGQEEET +IV AHGYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 57 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 97

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy TrEMBL
Match: A0A287U3B3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-05
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL 67
           FGQEEET +IV AHGYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 157 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 197

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy TrEMBL
Match: D6BK85 (Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+
Sbjct: 146 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALH 179

[Close]

BLAST of ClCG01G013075.1 vs. ExPASy TrEMBL
Match: A0A650CAX4 (Photosystem II protein D1 (Fragment) OS=Hapalidiales sp. YA_Twist-2019 OX=2492742 GN=psbA PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG 72
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+     LGL  V G
Sbjct: 213 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALHF---FLGLWPVVG 256

[Close]

BLAST of ClCG01G013075.1 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-07
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLH 272

The following BLAST results are available for this feature:

BLAST of ClCG01G013075.1 vs. NCBI nr


Match Name	E-value	Identity	Description
VDD65979.1	1.0e-04	72.97	unnamed protein product [Brassica oleracea]	[more]
KAG5122340.1	4.0e-04	70.00	hypothetical protein JHK84_040680 [Glycine max]	[more]
ADG03116.1	5.2e-04	73.53	photosystem II protein D1, partial [uncultured eukaryote]	[more]
QGR10201.1	5.2e-04	63.83	photosystem II D1 protein, partial [Hapalidiales sp. YA_Twist-2019]	[more]
ACF23897.1	6.8e-04	73.53	photosystem II protein D1, partial [uncultured bacterium]	[more]

BLAST of ClCG01G013075.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5A8K9	2.0e-06	73.53	Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=32972...	[more]
P07826	3.4e-06	70.59	Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1...	[more]
B1XIP3	3.4e-06	70.59	Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /...	[more]
Q8DIV4	3.4e-06	70.59	Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=19...	[more]
P48265	3.4e-06	70.59	Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1	[more]

BLAST of ClCG01G013075.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6HJ61	5.1e-05	72.97	Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV...	[more]
A0A287U321	6.6e-05	71.43	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
A0A287U3B3	6.6e-05	71.43	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
D6BK85	2.5e-04	73.53	Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA P...	[more]
A0A650CAX4	2.5e-04	63.83	Photosystem II protein D1 (Fragment) OS=Hapalidiales sp. YA_Twist-2019 OX=249274...	[more]

BLAST of ClCG01G013075.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	3.1e-07	70.59	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 23..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G013075	ClCG01G013075	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G013075.1-exon	ClCG01G013075.1-exon-CG_Chr01:26186696..26186766	exon
ClCG01G013075.1-exon	ClCG01G013075.1-exon-CG_Chr01:26189685..26189838	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G013075.1-cds	ClCG01G013075.1-cds-CG_Chr01:26186696..26186766	CDS
ClCG01G013075.1-cds	ClCG01G013075.1-cds-CG_Chr01:26189685..26189838	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G013075.1	ClCG01G013075.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity